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2011 Fiscal Year Final Research Report

Development of inter-molecular interaction theory for excited states

Research Project

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Project/Area Number 21685002
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Physical chemistry
Research InstitutionKyoto University

Principal Investigator

HASEGAWA Jun-ya  京都大学, 福井謙一記念研究センター, 准教授 (30322168)

Project Period (FY) 2009 – 2011
Keywords理論化学 / 量子化学 / 電子状態理論 / マルチフィジクス理論 / 励起状態理論 / 分子間相互作用 / 光機能性蛋白質 / カラーチューニング
Research Abstract

Depending on molecular environment, some photo-functional proteins(human visual cone pigments and fluorescent proteins) significantly change their photo-absorption/emission energy. We performed quantum chemical calculations to analyze the mechanism. We found that, upon excitation, the charge distributions of the chromophores change significantly and the proteins produce polarized electrostatic potential. These two facts cause a synergy effect on the excitation energy. We also found that the wave functions of amino acids close to the chromophore also affect the excitation energy in some retinal proteins. To analyze the electronic effect of the protein environment, we have developed a new localization scheme that can localize MOs into predefined shapes and regions. This localization scheme was applied to analyze the pathway for the excitation transfer.

  • Research Products

    (41 results)

All 2012 2011 2010 2009 Other

All Journal Article (21 results) (of which Peer Reviewed: 20 results) Presentation (19 results) Remarks (1 results)

  • [Journal Article] Chronological Change from Face-On to Edge-On Ordering of Zinc Tetraphenylporphyrin at Phenyloctane-HOPG Interface2012

    • Author(s)
      J. Hasegawa, K. Higashiguchi, and K. Matsuda
    • Journal Title

      Chem. Asian J.

      Volume: 7(2) Pages: 394-399

    • DOI

      DOI:10.1002/asia.201100587

    • Peer Reviewed
  • [Journal Article] Kinetic investigation on carbamate formation from the reaction of carbon dioxide with amino acids in homogeneous aqueous solution2012

    • Author(s)
      Y. Yamamoto, J. Hasegawa, and Y. Ito
    • Journal Title

      J. Phys Org. Chem

      Volume: 25(3) Pages: 239-247

    • DOI

      DOI:10.1002/poc.1900

    • Peer Reviewed
  • [Journal Article] Theoretical study of the excited states and the redox potentials of unusually distortedβ-trifluoromethylporphycene2011

    • Author(s)
      J. Hasegawa and K. Matsuda
    • Journal Title

      Chem. Acc

      Volume: 130(2-3) Pages: 175-185

    • DOI

      DOI:10.1007/s00214-011-0950-8

    • Peer Reviewed
  • [Journal Article] Bridge-Mediated Excitation Energy Transfer Pathways through Protein Media : a Slater Determinant-Based Electronic Coupling Calculation Combined with Localized Molecular Orbitals2011

    • Author(s)
      T. Kawatsu, K. Matsuda, and J. Hasegawa
    • Journal Title

      J. Phys Chem. A

      Volume: 115(39) Pages: 10814-10822

    • DOI

      DOI:10.1021/jp2068792

    • Peer Reviewed
  • [Journal Article] Theoretical Study of the Excited States of the Photosynthetic Reaction Center in Photo system II: Elecronic Sructure, Interactions, and Their Origin2011

    • Author(s)
      Y. Kitagawa, K. Matsuda, and J. Hasegawa
    • Journal Title

      Biophys. Chem

      Volume: 159(2-3) Pages: 227-236

    • DOI

      DOI:10.1016/j.bpc.2011.06.011

    • Peer Reviewed
  • [Journal Article] Chemical-intuition based LMO transformation simplifies excited-state wave functions of peptides2011

    • Author(s)
      J. Hasegawa, T. Kawatsu, K. Toyoya, and K. Matsuda
    • Journal Title

      Chem. Phys. Letters

      Volume: 508(1-3) Pages: 171-176

    • DOI

      DOI:10.1016/j.cplett.2011.04.028

    • Peer Reviewed
  • [Journal Article] Color tuning in photo-functional proteins2011

    • Author(s)
      J. Hasegawa K. J. Fujimoto, and H. Nakatsuji
    • Journal Title

      Nakatsuji Chem Phys Chem

      Volume: 12(17) Pages: 3106-3115

    • DOI

      DOI:10.1002/cphc.201100452

    • Peer Reviewed
  • [Journal Article] Theoretical Study of the Opsin Shift of Deprotonated Retinal Schiff Base in the Mstate of Bacteriorhodopsin2010

    • Author(s)
      K. Fujimoto, K. Asai, and J. Hasegawa
    • Journal Title

      Phys. Chem. Chem. Phys

      Volume: 12(40) Pages: 13107-13116

    • DOI

      DOI:10.1039/C0CP00361A

    • Peer Reviewed
  • [Journal Article] Theoretical Investigation on the Origin of the CD Signal Reversal for the Closed-ring Isomer of Diarylethene with Peripherical pi-Conjugated Substituents2010

    • Author(s)
      T. Hirose, J.-y. Hasegawa, and K. Matsuda
    • Journal Title

      Chem. Lett.

      Volume: 39(5) Pages: 516-517

    • DOI

      DOI:10.1246/cl.2010.516

    • Peer Reviewed
  • [Journal Article] Excited States of Fluorescent Proteins, mKO and DsRed : Chromophore-protein Electrostatic Interaction Behind the Color Variations2010

    • Author(s)
      J. Hasegawa, T. Ise, K. Fujimoto, A. Kikuchi, E. Fukumura, A. Miyawaki, and Y. Shiro
    • Journal Title

      J. Phys Chem. B

      Volume: 114(8) Pages: 2971-2979

    • DOI

      DOI:10.1021/jp9099573

    • Peer Reviewed
  • [Journal Article] Generalizing the bra state in the symmetry-adapted cluster singles and doubles method and the second-order perturbation correction2010

    • Author(s)
      A. Obata, and K. Matsuda
    • Journal Title

      Chem. Phys. Letters

      Volume: 486(1-3) Pages: 84-88

    • DOI

      DOI:10.1016/j.cplett.2009.12.080

    • Peer Reviewed
  • [Journal Article] 光機能性蛋白質におけるカラー・チューニングの量子化学2010

    • Author(s)
      長谷川淳也
    • Journal Title

      Molecular Science

      Volume: 4(1) Pages: A0031

    • DOI

      DOI:10.3175/molsci.4.A0031

    • Peer Reviewed
  • [Journal Article] Circular Dichroism and Absorption Spectroscopy for Three-membered Ring Compounds Using Symmetry-adapted Cluster-Configuration Interaction(SAC-CI) Method2009

    • Author(s)
      T. Miyahara, J. Hasegawa, and H. Nakatsuji
    • Journal Title

      Bull. Chem. Soc. Jpn

      Volume: 82(10) Pages: 1215-1226

    • DOI

      DOI:10.1246/bcsj.82.1215

    • Peer Reviewed
  • [Journal Article] Color tuning mechanism in human red, green, and blue cone visual pigments : SAC-CI theoretical study2009

    • Author(s)
      K. Fujimoto, J. Hasegawa, and H. Nakatsuji
    • Journal Title

      Bull. Chem. Soc. Jpn

      Volume: 82(9) Pages: 1140-1148

    • DOI

      DOI:10.1246/bcsj.82.1140

    • Peer Reviewed
  • [Journal Article] Charge-polarized coordination space for H2 adsorption2009

    • Author(s)
      J. Hasegawa, M. Higuchi, Y. Hijikata, and S. Kitagawa
    • Journal Title

      Chem. Mater

      Volume: 21(9) Pages: 1829-1833

    • Peer Reviewed
  • [Journal Article] Artificial Color Tuning of Firefly Luminescence : Theoretical Mutation by Tuning Electrostatic Interactions between Protein and Luciferin2009

    • Author(s)
      N. Nakatani, J. Hasegawa, and H. Nakatsuji
    • Journal Title

      Chem. Phys. Letters

      Volume: 469(1-3) Pages: 191-194

    • DOI

      DOI:10.1016/j.cplett.2008.12.062

    • Peer Reviewed
  • [Journal Article] A multi-core QM/MM approach for the geometry optimization of chromophore aggregate in proteins2009

    • Author(s)
      Y. Kiyota, J. Hasegawa, K. Fujimoto, B. Swerts, and H. Nakatsuji
    • Journal Title

      J. Comp. Chem

      Volume: 30(8) Pages: 1351-1359

    • DOI

      DOI:10.1002/jcc.21156

    • Peer Reviewed
  • [Journal Article] Photocyclization of 2, 4, 6-Triethylbenzophenones in the Solid State2009

    • Author(s)
      Y. Ito, H. Takahashi, J. Hasegawa, and N. J. Turro
    • Journal Title

      Tetrahedron

      Volume: 65(3) Pages: 677-689

    • DOI

      DOI:10.1016/j.tet.2008.10.105

    • Peer Reviewed
  • [Journal Article] 水素吸蔵体:分子間相互作用の解析と分子設計への展望2009

    • Author(s)
      長谷川淳也
    • Journal Title

      配位空間の化学―最新技術と応用―

  • [Journal Article] Color tuning in human cone visual pigments

    • Author(s)
      J. Hasegawa, K. Fujimoto, and H. Nakatsuji
    • Journal Title

      Progress in Theoretical Physics and Chemistry

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Excitation Energy Transfer in GFP-X-CFP Model Peptides(X=amino acids): direct vs. through-bridge energy transfers

    • Author(s)
      T. Kawatsu and J. Hasegawa, Intern. J.
    • Journal Title

      Quantum. Chem

      Volume: (in press)

    • DOI

      DOI:10.1002/qua.24027

    • Peer Reviewed
  • [Presentation] 光生物学システムの励起状態と機能への理論的アプローチ(依頼講演)2012

    • Author(s)
      長谷川淳也
    • Organizer
      日本化学会第92春季年会(第2次先端ウオッチング)
    • Place of Presentation
      慶應義塾大学
    • Year and Date
      20120325-28
  • [Presentation] 光機能性蛋白質における励起状態と分子間相互作用(招待講演)「バイオサイエンスに対する計算分子科学からのアプローチ」2012

    • Author(s)
      長谷川淳也
    • Organizer
      計算科学研究センター・ワークショップ
    • Place of Presentation
      分子科学研究所
    • Year and Date
      20120124-25
  • [Presentation] 光機能性蛋白質のカラーチューニング(依頼講演)2011

    • Author(s)
      長谷川淳也
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大学
    • Year and Date
      20111121-22
  • [Presentation] Excited states of photo-functional proteins : SAC-CI study2011

    • Author(s)
      J. Hasegawa
    • Organizer
      The 16-th Quantum Systems in Chemistry and Physics
    • Place of Presentation
      Kanazawa
    • Year and Date
      20110912-17
  • [Presentation] Theoretical study on the excited states and molecular interactions of photo-functional proteins2011

    • Author(s)
      J. Hasegawa
    • Organizer
      The 14-th Asian Chemical Congress
    • Place of Presentation
      Bangkok, Thailand
    • Year and Date
      20110902-04
  • [Presentation] Excited states of photo-functional proteins2011

    • Author(s)
      J. Hasegawa
    • Organizer
      Fukui International Symposium for Theoretical Chemistry
    • Place of Presentation
      Kyoto, Aug
    • Year and Date
      20110901-31
  • [Presentation] Quantum chemistry of the excited states of photo-functional proteins2011

    • Author(s)
      J. Hasegawa
    • Organizer
      Bio Informatics in Torun-BIT11
    • Place of Presentation
      Copernicus University, Torun, Poland, Jun
    • Year and Date
      20110602-04
  • [Presentation] Excited states of photo-functional proteins : SAC-CI study(Invited talk)2011

    • Author(s)
      J. Hasegawa
    • Organizer
      The 4-th Japan-Czech-Slovakia Symposium on Theoretical Chemistry
    • Place of Presentation
      Prague, Czech
    • Year and Date
      20110518-20
  • [Presentation] 光機能性蛋白質の励起状態と機能(招待講演)2011

    • Author(s)
      長谷川淳也
    • Organizer
      第1回研究会,分子科学研究所
    • Place of Presentation
      分子科学研究所
    • Year and Date
      20110204-05
  • [Presentation] Spectral tuning mechanism in photo functional proteins2010

    • Author(s)
      J. Hasegawa
    • Organizer
      BIT's 2nd Annual World Congress of Biosoft
    • Place of Presentation
      Dalian, China
    • Year and Date
      20100623-25
  • [Presentation] 光生物学における分子理論の展開2010

    • Author(s)
      長谷川淳也
    • Organizer
      特定領域研究「実在系の分子理論」最終成果報告会
    • Place of Presentation
      東京大学
    • Year and Date
      20100305-06
  • [Presentation] Quantum Chemistry in the Primary Event of Photo biological Processes(Invited talk)2010

    • Author(s)
      J. Hasegawa
    • Organizer
      Pure and Applied Chemistry International Conference
    • Place of Presentation
      Thailand
    • Year and Date
      20100121-23
  • [Presentation] Quantum Chemistry on the Photo functional Proteins2010

    • Author(s)
      長谷川淳也
    • Organizer
      分子アンサンブル
    • Place of Presentation
      理化学研究所
    • Year and Date
      2010-11-16
  • [Presentation] 光合成反応中心における励起電子移動の量子化学(依頼講演)2010

    • Author(s)
      長谷川淳也
    • Organizer
      第59回高分子討論会
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-17
  • [Presentation] 光生物学システムの励起状態と機能:高精度電子理論の開発を基盤とする理論的研究(奨励賞受賞講演)2010

    • Author(s)
      長谷川淳也
    • Organizer
      第4回分子科学討論会
    • Place of Presentation
      大阪大学
    • Year and Date
      2010-09-14
  • [Presentation] Toward Rational Molecular Design of Functional Proteins : Emission Color Tuning Mechanism of Fluorescent Proteins2009

    • Author(s)
      長谷川淳也
    • Organizer
      理研シンポジウム「分子アンサンブル」
    • Place of Presentation
      理化学研究所
    • Year and Date
      20091207-09
  • [Presentation] Excited states of photo functional molecules in protein : Electronic structure and interaction Invited talk)2009

    • Author(s)
      J. Hasegawa
    • Organizer
      45th Symposium on Theoretical Chemistry, Excited States : From Photo physics to Photobiology
    • Place of Presentation
      Neuss am Rhein, Germany
    • Year and Date
      20090908-12
  • [Presentation] Excited states of photo functional molecules in protein environments(Invited talk)2009

    • Author(s)
      J. Hasegawa
    • Organizer
      CREST International Symposium on Theory and Simulations of Complex Molecular Systems
    • Place of Presentation
      Kyoto University
    • Year and Date
      20090719-21
  • [Presentation] 光合成・色覚・蛍光蛋白質の光機能への量子化学アプローチ2009

    • Author(s)
      長谷川淳也
    • Organizer
      東北大学理学部化学教室「一般雑誌会」
    • Place of Presentation
      東北大学
    • Year and Date
      2009-11-27
  • [Remarks]

    • URL

      http://www.fukui.kyoto-u.ac.jp/users/hasegawa/

URL: 

Published: 2013-07-31  

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