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2012 Fiscal Year Final Research Report

Development of versatile techniques for computing similarity between tree-structured data

Research Project

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Project/Area Number 21700178
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Intelligent informatics
Research InstitutionDoshisha University (2010-2012)
National Institute of Informatics (2009)

Principal Investigator

FUKAGAWA Daiji  同志社大学, 文化情報学部, 助教 (10442518)

Project Period (FY) 2009 – 2012
Keywords木構造 / 類似度 / 近似パターン照合 / アルゴリズム
Research Abstract

In this project, we developed several methods which computes distance between tree structured data and gives an approximate matching between them. As a result, we obtained fast approximate algorithms which computes edit distance between ordered/unordered trees, fixed parameter algorithm to compute the proper tree edit distance, fast exact algorithm to compute an optimal tree matching via maximum clique problem, a probabilistic model to measure similarity of trees and a learning algorithm for the model.

  • Research Products

    (15 results)

All 2013 2012 2011 2010 2009

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (10 results)

  • [Journal Article] Approximation and parameterized algorithms for common subtrees and edit distance between unordered trees2013

    • Author(s)
      Tatsuya Akutsu, Daiji Fukagawa, Magnus M. Halldorsson, Atsuhiro Takasu, Keisuke Tanaka
    • Journal Title

      Theoretical Computer Science

      Volume: 470 Pages: 10-22

    • Peer Reviewed
  • [Journal Article] A Clique-Based Method Using Dynamic Programming for Computing Edit Distance Between Unordered Trees2012

    • Author(s)
      Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu
    • Journal Title

      Journal of Computational Biology

      Volume: 19(10) Pages: 1089-1104

    • DOI

      DOI:10.1089/cmb.2012.0133

    • Peer Reviewed
  • [Journal Article] A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures2011

    • Author(s)
      Daiji Fukagawa, Takeyuki Tamura, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu
    • Journal Title

      BMC Bioinformatics

      Volume: 12(S-1): S13

    • DOI

      DOI:10.1186/1471-2105-12-S1-S13

    • Peer Reviewed
  • [Journal Article] Exact algorithms for computing the tree edit distance between unordered trees2011

    • Author(s)
      Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu, Takeyuki Tamura
    • Journal Title

      Theoretical Computer Science

      Volume: 412(4-5) Pages: 352-364

    • DOI

      DOI:10.1016/j.tcs.2010.10.002

    • Peer Reviewed
  • [Journal Article] Approximating Tree Edit Distance through String Edit Distance2010

    • Author(s)
      Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu
    • Journal Title

      Algorithmica

      Volume: 57(2) Pages: 325-348

    • DOI

      DOI:10.1007/s00453-008-9213-z

    • Peer Reviewed
  • [Presentation] Efficient Exponential Time Algorithms for Edit Distance between Unordered Trees. Proc.2012

    • Author(s)
      Tatsuya Akutsu, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu
    • Organizer
      23rd Annual Symposium on Combinatorial Pattern Matching (CPM 2012)
    • Place of Presentation
      Helsinki, Finland
    • Year and Date
      20120703-05
  • [Presentation] 無順序木の編集距離の指数時間厳密アルゴリズム2012

    • Author(s)
      阿久津達也, 田村武幸, 深川大路, 高須淳宏
    • Organizer
      電子情報通信学会コンピュテーション研究会
    • Place of Presentation
      北海道大学
    • Year and Date
      2012-06-21
  • [Presentation] An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures2011

    • Author(s)
      Tatsuya Akutsu, Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita
    • Organizer
      International Conference on Complex, Intelligent and Software Intensive Systems (CISIS 2011)
    • Place of Presentation
      Korean Bible University (Seoul, Korea)
    • Year and Date
      20110630-0702
  • [Presentation] An Improved Clique-Based Method for Computing Edit Distance between Rooted Unordered Trees2011

    • Author(s)
      Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita, Tatsuya Akutsu
    • Organizer
      情報処理学会第26回バイオ情報学研究発表会
    • Place of Presentation
      神戸大学
    • Year and Date
      2011-09-13
  • [Presentation] A Variational Bayesian EM Algorithm for Tree Similarity. Proc.2010

    • Author(s)
      Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu
    • Organizer
      20th International Conference on Pattern Recognition (ICPR 2010)
    • Place of Presentation
      Istanbul, Turkey
    • Year and Date
      20100823-26
  • [Presentation] 無順序木の編集距離を計算する実用的アルゴリズムについて2010

    • Author(s)
      深川大路, 田村武幸, 高須淳宏
    • Organizer
      人工知能学会 第78回 人工知能基本問題研究会
    • Place of Presentation
      兵庫県立大学(神戸キャンパス)
    • Year and Date
      2010-08-01
  • [Presentation] 高さ制約付き無順序木の高速類似検索アルゴリズムについて2010

    • Author(s)
      深川大路, 阿久津達也, 高須淳宏, 安達淳
    • Organizer
      情報処理学会第72回全国大会
    • Place of Presentation
      東京大学
    • Year and Date
      2010-03-09
  • [Presentation] 無順序木の編集距離計算のための厳密アルゴリズム2010

    • Author(s)
      阿久津達也, 深川大路, 高須淳宏, 田村武幸
    • Organizer
      情報処理学会アルゴリズム研究会
    • Place of Presentation
      東芝科学館(東京)
    • Year and Date
      2010-03-05
  • [Presentation] Constant Factor Approximation of Edit Distance of Bounded Height Unordered Trees2009

    • Author(s)
      Daiji Fukagawa, Tatsuya Akutsu, Atsuhiro Takasu
    • Organizer
      16th International Symposium on String Processing and Information Retrieval (SPIRE 2009)
    • Place of Presentation
      Saariselka, Finland
    • Year and Date
      20090825-27
  • [Presentation] 高さの制限された無順序木の編集距離問題に対する近似アルゴリズム2009

    • Author(s)
      深川大路, 阿久津達也, 高須淳宏
    • Organizer
      電子情報通信学会コンピュテーション研究会
    • Place of Presentation
      北海道大学
    • Year and Date
      2009-06-29

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Published: 2014-08-29  

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