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2011 Fiscal Year Final Research Report

Discovery of reliable causal structures in high-dimensional data

Research Project

  • PDF
Project/Area Number 21700302
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Statistical science
Research InstitutionOsaka University

Principal Investigator

SHIMIZU Shohei  大阪大学, 産業科学研究所, 助教 (10509871)

Project Period (FY) 2009 – 2011
Keywords統計的因果推論 / 構造方程式モデル / 独立成分分析 / 因果構造探索
Research Abstract

We developed several statistical methods to estimate causal networks from high-dimensional data and obtain useful causal knowledge. Specifically, we(1) developed two methods to find exogenous variables that trigger causal chains,(2) developed a direct method to estimate the entire or sub-network based on the methods for finding exogenous variables, and(3) evaluated our methods based on simulations on artificial data and real-world datasets including gene-expression data, brain imaging data and sociology data. We further made some software to perform the methods available on the internet so that many practitioners can use our methods.

  • Research Products

    (30 results)

All 2012 2011 2010 2009 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (20 results) Remarks (5 results)

  • [Journal Article] Joint estimation of linear non-Gaussian acyclic models2012

    • Author(s)
      S. Shimizu
    • Journal Title

      Neurocomputing

      Volume: 81 Pages: 104-107

    • DOI

      DOI:10.1016/j.neucom.2011.11.005

    • Peer Reviewed
  • [Journal Article] DirectLiNGAM : A direct method for learning a linear non-Gaussian structural equation model2011

    • Author(s)
      S. Shimizu, T. Inazumi, Y. Sogawa, A. Hyvarinen, Y. Kawahara, T. Washio, P. O. Hoyer, and K. Bollen.
    • Journal Title

      Journal of Machine Learning Research

      Pages: 1225-1248

    • URL

      http://jmlr.csail.mit.edu/papers/volume12/shimizu11a/shimizu11a.pdf

    • Peer Reviewed
  • [Journal Article] Estimating exogenous variables in data with more variables than observations2011

    • Author(s)
      Y. Sogawa, S. Shimizu, T. Shimamura, A. Hyvarinen, T. Washio, and S. Imoto
    • Journal Title

      Neural Networks

      Volume: 24(8) Pages: 875-880

    • DOI

      DOI:10.1016/j.neunet.2011.05.017

    • Peer Reviewed
  • [Journal Article] Analyzing relationships among ARMA processes based on non-Gaussianity of external influences2011

    • Author(s)
      Y. Kawahara, S. Shimizu, and T. Washio
    • Journal Title

      eurocomputing

      Volume: 74(12-13) Pages: 2212-2221

    • URL

      http://dx.doi.org/10.1016/j.neucom.2011.02.008

    • Peer Reviewed
  • [Journal Article] Estimation of a structural vector autoregression model using non-Gaussianity2010

    • Author(s)
      A. Hyvarinen, K. Zhang, S. Shimizu and P. O. Hoyer
    • Journal Title

      Journal of Machine Learning Research

      Pages: 1709-1731

    • URL

      http://jmlr.csail.mit.edu/papers/volume11/hyvarinen10a/hyvarinen10a.pdf

    • Peer Reviewed
  • [Presentation] 複数データセットによる非ガウス構造方程式モデルの推定2012

    • Author(s)
      清水昌平
    • Organizer
      情報統計力学の最前線ー情報と揺らぎの制御の物理学を目指してー
    • Place of Presentation
      京都大学(京都)(招待講演)
    • Year and Date
      2012-03-21
  • [Presentation] 複数データセットによる非ガウス構造方程式モデルの推定2012

    • Author(s)
      清水昌平
    • Organizer
      科研費シンポジウム「生体数理・社会数理の統計科学」
    • Place of Presentation
      早稲田大学(東京)
    • Year and Date
      2012-03-02
  • [Presentation] 離散データの因果の同定~2値から、多値への一般化について~2011

    • Author(s)
      鈴木譲, 清水昌平, 鷲尾隆
    • Organizer
      第14回情報論的学習理論ワークショップ
    • Place of Presentation
      奈良女子大学(奈良)
    • Year and Date
      2011-11-10
  • [Presentation] 分割表の独立性に基づく二値データ生成過程の推定法2011

    • Author(s)
      稲積孝紀, 鷲尾隆, 清水昌平, 鈴木譲, 山本章博, 河原吉伸
    • Organizer
      第14回情報論的学習理論ワークショップ
    • Place of Presentation
      奈良女子大学(奈良)
    • Year and Date
      2011-11-10
  • [Presentation] Discovering causal structures in binary exclusive-or skew acyclic models. 27th Conf2011

    • Author(s)
      T. Inazumi, T. Washio, S. Shimizu, J. Suzuki, A. Yamamoto and Y. Kawahara
    • Organizer
      27th Conf. on Uncertainty in Artificial Intelligence(UAI2011)
    • Place of Presentation
      バルセロナ(スペイン)
    • Year and Date
      2011-07-16
  • [Presentation] Analyzing relationships between CTARMA and ARMA models2011

    • Author(s)
      Marina Domeshko, 鷲尾隆, 河原吉伸, 清水昌平
    • Organizer
      第25回人工知能学会全国大会
    • Place of Presentation
      いわて県民情報交流センター(盛岡)
    • Year and Date
      2011-06-02
  • [Presentation] 定常時系列データの非ガウス性を用いたARMAモデルによる変数間決定関係の解析2011

    • Author(s)
      田代竜也, 清水昌平, 河原吉伸, 鷲尾隆
    • Organizer
      第25回人工知能学会全国大会
    • Place of Presentation
      いわて県民情報交流センター(盛岡)
    • Year and Date
      2011-06-02
  • [Presentation] 二値データに対するデータ生成過程の推定2011

    • Author(s)
      稲積孝紀, 鷲尾隆, 清水昌平, 鈴木譲, 山本章博, 河原吉伸
    • Organizer
      第25回人工知能学会全国大会
    • Place of Presentation
      いわて県民情報交流センター(盛岡)
    • Year and Date
      2011-06-02
  • [Presentation] 構造方程式モデルによるデータ生成過程の学習,特に非ガウス性の利用2010

    • Author(s)
      清水昌平
    • Organizer
      第13回情報論的学習理論ワークショップ(IBIS2010)
    • Place of Presentation
      東京大学(東京)
    • Year and Date
      2010-11-04
  • [Presentation] Use of prior knowledge in a non-Gaussian method for learning linear structural equation models2010

    • Author(s)
      T. Inazumi, S. Shimizu and T. Washio
    • Organizer
      9th Int. Conf. on Latent Variable Analysis and Signal Separation(LVA/ ICA2010)
    • Place of Presentation
      サンマロ(フランス)
    • Year and Date
      2010-09-28
  • [Presentation] Discovery of exogenous variables in data with more variables than observations2010

    • Author(s)
      Y. Sogawa, S. Shimizu, A. Hyvarinen, T. Washio, T. Shimamura and S. Imoto
    • Organizer
      20^<th> Int. Conf. on Artificial Neural Networks(ICANN2010)
    • Place of Presentation
      テッサロニキ(ギリシャ)
    • Year and Date
      2010-09-17
  • [Presentation] Assessing statistical reliability of LiNGAM via multiscale bootstrap2010

    • Author(s)
      Y. Komatsu, S. Shimizu and H. Shimodaira
    • Organizer
      20^<th> Int. Conf. on Artificial Neural Networks(ICANN2010)
    • Place of Presentation
      テッサロニキ(ギリシャ)
    • Year and Date
      2010-09-15
  • [Presentation] ブートストラップ確率の計算誤差を修正するためのマルチスケール・ブートストラップ法: LiNGAM因果構造推定の場合2010

    • Author(s)
      小松勇介、下平英寿、清水昌平
    • Organizer
      2010年度統計関連学会連合大会
    • Place of Presentation
      早稲田大学(東京)
    • Year and Date
      2010-09-06
  • [Presentation] Washio. An experimental comparison of linear non-Gaussian causal discovery methods and their variants2010

    • Author(s)
      Y. Sogawa, S. Shimizu, Y. Kawahara and T. Washio
    • Organizer
      Int. Joint Conf. on Neural Networks(IJCNN2010), part of the IEEE World Congress on Computational Intelligence(WCCI2010)
    • Place of Presentation
      バルセロナ(スペイン)
    • Year and Date
      2010-07-23
  • [Presentation] Non-Gaussian methods for learning linear structural equation models2010

    • Author(s)
      S. Shimizu and Y. Kawahara
    • Organizer
      26th Conference on Uncertainty in Artificial Intelligence(UAI2010)
    • Place of Presentation
      カタナリーナ島(米国)(招待チュートリアル)
    • Year and Date
      2010-07-08
  • [Presentation] データの非正規性を活用する因果構造探索法と事前情報の利用2010

    • Author(s)
      稲積孝紀、十河泰弘、清水昌平、河原吉伸、鷲尾隆
    • Organizer
      第24回人工知能学会全国大会
    • Place of Presentation
      長崎ブリックホール(長崎)
    • Year and Date
      2010-06-09
  • [Presentation] マルチスケール・ブートストラップを用いた信頼度計算: LiNGAMによる因果モデル探索の場合2009

    • Author(s)
      小松勇介、清水昌平、下平英寿
    • Organizer
      2009年度統計関連学会連合大会
    • Place of Presentation
      同志社大学(京都)
    • Year and Date
      2009-09-07
  • [Presentation] Identification of an exogenous variable in a linear non-Gaussian structural equation model2009

    • Author(s)
      S. Shimizu, A. Hyvarinen, Y. Kawahara and T. Washio
    • Organizer
      The Fourth International Workshop on Data-Mining and Statistical Science(DMSS2009)
    • Place of Presentation
      京大会館(京都)
    • Year and Date
      2009-07-08
  • [Presentation] A direct method for estimating a causal ordering in a linear non-Gaussian acyclic model2009

    • Author(s)
      S. Shimizu, A. Hyvarinen, Y. Kawahara and T. Washio
    • Organizer
      25th Conf. on Uncertainty in Artificial Intelligence(UAI2009)
    • Place of Presentation
      モントリオール(カナダ)
    • Year and Date
      2009-06-21
  • [Presentation] 独立成分分析を用いた外生的発現遺伝子同定解析2009

    • Author(s)
      十河泰弘、清水昌平、鷲尾隆、井元清哉
    • Organizer
      第23回人工知能学会全国大会
    • Place of Presentation
      サンポート高松(高松)
    • Year and Date
      2009-06-18
  • [Remarks]

    • URL

      http://www.ar.sanken.osaka-u.ac.jp/~sshimizu/

  • [Remarks] ソフトウェアDirectLiNGAM

    • URL

      http://www.ar.sanken.osaka-u.ac.jp/~sshimizu/code/Dlingamcode.html

  • [Remarks] JointDirectLiNGAM

    • URL

      http://www.ar.sanken.osaka-u.ac.jp/~sshimizu/code/jointDlingamcode.html

  • [Remarks] ARMA-DirectLiNGAM

    • URL

      http://www.ar.sanken.osaka-u.ac.jp/~sshimizu/code/armaDlingamcode.html

  • [Remarks] Bexsam

    • URL

      http://www.ar.sanken.osaka-u.ac.jp/~inazumi/bexsam.html

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Published: 2013-07-31  

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