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2011 Fiscal Year Final Research Report

Development of an efficient chromatin pull-down method from small cell numbers

Research Project

  • PDF
Project/Area Number 21770251
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Developmental biology
Research InstitutionKyoto University (2010-2011)
The Institute of Physical and Chemical Research (2009)

Principal Investigator

KURIMOTO Kazuki  京都大学, 医学研究科, 助教 (20415152)

Project Period (FY) 2009 – 2011
Keywords生殖細胞 / エピジェネティクス
Research Abstract

The aim of this research project is to develop a method to determine the binding sites of specific transcription factors that play important roles in specific cell lineages, such as primordial germ cells. To purify genomic DNA bound to a specific transcription factor, I developed knock-in mice that carry tags in the particular transcription factor. Furthermore, I developed a method to quantitatively amplify genomic DNA bound to a transcription factor. By these methods, it has become plausible to determine genomic sites bound to a transcription factor in a small cell number, such as 10, 000 cells.

  • Research Products

    (10 results)

All 2012 2011 2010 2009

All Journal Article (6 results) (of which Peer Reviewed: 3 results) Presentation (1 results) Book (3 results)

  • [Journal Article] Epigenetic reprogramming in mouse pre-implantation development and primordial germ cells2012

    • Author(s)
      Saitou, M., Kagiwada, S., Kurimoto, K.
    • Journal Title

      Development

      Volume: 139 Pages: 15-31

    • DOI

      DOI:139/1/15[pii],10.1242/dev.050849

  • [Journal Article] A global single-cell cDNA amplification method for quantitative micro array analysis2011

    • Author(s)
      Kurimoto, K., and Saitou, M.
    • Journal Title

      Methods Mol Biol

      Volume: 687 Pages: 91-111

    • DOI

      DOI:10.1007/978-1-60761-944-4_7

  • [Journal Article] Reconstitution of the mouse germ cell specification pathway in culture by pluripotentstem cells2011

    • Author(s)
      Hayashi, K., Ohta, H., Kurimoto, K., Aramaki, S., and Saitou, M.
    • Journal Title

      Cell

      Volume: 146 Pages: 519-532

    • DOI

      DOI:10.1016/j.cell.2011.06.052

    • Peer Reviewed
  • [Journal Article] TDRD5is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice2011

    • Author(s)
      Yabuta, Y., Ohta, H., Abe, T., Kurimoto, K., Chuma, S., and Saitou, M.
    • Journal Title

      J Cell Biol

      Volume: 192 Pages: 781-795

    • DOI

      DOI:10.1083/jcb.201009043

    • Peer Reviewed
  • [Journal Article] Single-cell cDNA micro array profiling of complex biological processes of differentiation2010

    • Author(s)
      Kurimoto, K., and Saitou, M.
    • Journal Title

      Curr Opin Genet Dev

      Volume: 20 Pages: 470-477

    • DOI

      DOI:10.1016/j.gde.2010.06.003

  • [Journal Article] Conditional knockdown of Nanoginduces apoptotic cell death in mouse migrating primordial germ cells2009

    • Author(s)
      Yamaguchi, S., Kurimoto, K., Yabuta, Y., Sasaki, H., Nakatsuji, N., Saitou, M., and Tada, T.
    • Journal Title

      Development

      Volume: 136 Pages: 4011-4020

    • DOI

      DOI:10.1242/dev.041160

    • Peer Reviewed
  • [Presentation] Global transcription profiling of complex biological processes of cellular differentiation at the single-cell resolution2010

    • Author(s)
      Saitou, M., Kurimoto, K.
    • Organizer
      Pacific hem 2010, Recent Advances in Bioanalysis : Ultra-Small Volumes
    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2010-12-19
  • [Book] 卵子学第I章卵子の発生と新生/3生殖系列の決定機構とその特性2011

    • Author(s)
      栗本一基、斎藤通紀
    • Total Pages
      1195
    • Publisher
      京都大学学術出版
  • [Book] 単一細胞cDNA増幅法実験医学別冊・新遺伝子工学ハンドブック2010

    • Author(s)
      栗本一基, 斎藤通紀
    • Total Pages
      365
    • Publisher
      羊土社
  • [Book] 哺乳類の生殖細胞形成を制御する分子機構実験医学Vol.27No.3(2月号)2009

    • Author(s)
      栗本一基, 山路剛史, 関由行, 斎藤通紀
    • Total Pages
      480
    • Publisher
      羊土社

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Published: 2013-07-31  

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