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2011 Fiscal Year Final Research Report

Analysis of mechanisms of ERK MAP kinase phosphorylation

Research Project

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Project/Area Number 21790273
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionKyoto University

Principal Investigator

AOKI Kazuhiro  京都大学, 大学院・生命科学研究科, 講師 (80511427)

Project Period (FY) 2009 – 2011
KeywordsFRET / イメージング / シグナル伝達 / システム生物学 / 癌
Research Abstract

ERK MAP kinase is essential for cell proliferation, differentiation and tumorigenetsis. We analyzed molecular mechanisms of ERK phosphorylation by using imaging and computer simulation. Approximately 30 kinetic parameters were measured by experiments. Based on these empirical parameters, we built a simulation model, and found that ERK was processively, but not distributively, phosphorylated by MEK.

  • Research Products

    (18 results)

All 2012 2011 2010 2009 Other

All Journal Article (7 results) Presentation (10 results) Remarks (1 results)

  • [Journal Article] Development of an optimized backbone of FRET biosensors for kinases and GTPases2011

    • Author(s)
      Komatsu N, Aoki K, Yamada M, Yukinaga H, Fujita Y, Kamioka Y, Matsuda M
    • Journal Title

      Mol. Biol. Cell.

      Volume: 22 Pages: 4647-56

    • DOI

      DOI:10.1091/mbc.E11-01-0072

  • [Journal Article] Processive phosphorylation of ERK MAP kinase in mammalian cells2011

    • Author(s)
      Aoki K, Yamada M, Kunida K, Yasuda S, Matsuda M.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 108 Pages: 12675-80

    • DOI

      DOI:10.1073/pnas.1104030108

  • [Journal Article] Spatiotemporal regulation of small GTPases as revealed by probes based on the principle of Forster Resonance Energy Transfer (FRET): Implications for signaling and pharmacology2011

    • Author(s)
      Kiyokawa E, Aoki K, Nakamura T, Matsuda M.
    • Journal Title

      Annu. Rev. Pharmacol. Toxicol.

      Volume: 51 Pages: 337-58

    • DOI

      DOI:10.1146/annurev-pharmtox-010510-100234

  • [Journal Article] Multiple decisive phosphorylation sites for the negative feedback regulation of SOS1 via ERK2010

    • Author(s)
      Kamioka Y, Yasuda S, Fujita Y, Aoki K, Matsuda M.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 33540-33548

    • DOI

      DOI:10.1074/jbc.M110.135517

  • [Journal Article] Calcium Signaling Pathways Converge at Raf1 via the Shoc2 Scaffold Protein2010

    • Author(s)
      Yoshiki S, Udagawa R, Aoki K, Kamioka Y, Kiyokawa E, Matsuda M. Ras
    • Journal Title

      Mol. Biol. Cell

      Volume: 21 Pages: 1088-96

    • DOI

      DOI:10.1091/mbc.E09-06-0455

  • [Journal Article] The Scaffold Protein Shoc2/SUR-8 Accelerates the Interaction of Ras and Raf2010

    • Author(s)
      Matsunaga-Udagawa R, Fujita Y, Yoshiki S, Terai K, Kamioka Y, Kiyokawa E, Yugi K, Aoki K, Matsuda M.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 7818-26

    • DOI

      DOI:10.1074/jbc.M109.053975

  • [Journal Article] Visualization of small GTPase activity with fluorescence resonance energy transfer-based biosensors2009

    • Author(s)
      Aoki K, Matsuda M.
    • Journal Title

      Nature Protoc.

      Volume: 7 Pages: 1623-31

    • DOI

      DOI:10.1038/nprot.2009.175

  • [Presentation] 分子混み合いの反応速度論的展開と実証2012

    • Author(s)
      青木一洋
    • Organizer
      定量生物の会第四回年会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-01-10
  • [Presentation] 分子混み合いを加味した反応速度論モデルの構築と実証2011

    • Author(s)
      青木一洋
    • Organizer
      定量生物の会第三回年会
    • Place of Presentation
      東京
    • Year and Date
      20111127-28
  • [Presentation] FRET imaging revealed a functional link between frequency of ERK oscillation and growth control by cell density2011

    • Author(s)
      Aoki K, and Matsuda M
    • Organizer
      The 12th International Conference on Systems Biology
    • Place of Presentation
      Heidelberg/Mannheim, Germany
    • Year and Date
      20110828-0901
  • [Presentation] RETイメージングを用いたERKによる細胞増殖制御機構の解析2011

    • Author(s)
      青木一洋、松田道行
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      東京
    • Year and Date
      2011-09-21
  • [Presentation] 実測パラメーターに基づく細胞内シグナル伝達系の定量的シミュレーション2011

    • Author(s)
      青木一洋
    • Organizer
      第6回トランスポーター研究会
    • Place of Presentation
      宮城県仙台市
    • Year and Date
      2011-06-11
  • [Presentation] がんの制御に向けたシステム的なアプローチ2011

    • Author(s)
      青木一洋
    • Organizer
      日本のライフ研究開発を元気にする「夢」と「攻め」-バイオ研究と計算・情報科学の次世代型融合を探る-公開シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2011-01-22
  • [Presentation] Quantitative kinetic analysis revealed processive phosphorylation of ERK MAP kinase in mammalian cells2010

    • Author(s)
      Kazuhiro Aoki, and Michiyuki Matsuda
    • Organizer
      第33回日本分子生物学会年会第82回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      20101207-10
  • [Presentation] Evidence that ERK is processively phosphorylated in mammalian cells2009

    • Author(s)
      Aoki K, Yamada M, Kunida K, and Matsuda M
    • Organizer
      The 10th International Conference on Systems Biology
    • Place of Presentation
      Stanford, California
    • Year and Date
      20090830-0904
  • [Presentation] 細胞内シグナル伝達系のフィードバック制御による細胞の形態形成機構2009

    • Author(s)
      青木一洋、国田勝行、松田道行
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-24
  • [Presentation] FRET imaging reveals a functional link between cell growth and oscillation frequency of ERK activity

    • Author(s)
      Kazuhiro Aoki
    • Organizer
      Molecular Imaging and Systems Biology
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      00000130-31
  • [Remarks]

    • URL

      http://researchmap.jp/kazuhiro_aoki/

URL: 

Published: 2013-07-31  

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