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2013 Fiscal Year Final Research Report

Microscopic Analysis of Dynamics-Controlled Organic Reactions

Research Project

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Project/Area Number 22350023
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Organic chemistry
Research InstitutionRikkyo University

Principal Investigator

YAMATAKA Hiroshi  立教大学, 理学部, 特定課題研究員 (60029907)

Co-Investigator(Kenkyū-buntansha) MOCHIZUKI Yuji  立教大学, 理学部, 教授 (00434209)
KOMEIJI Yuto  独立行政法人産業技術総合研究所, ナノシステム研究部門, 主任研究員 (30357032)
SATO Makoto  立教大学, 理学部, ポストドクトラルフェロー (10634347)
Project Period (FY) 2010-04-01 – 2014-03-31
Keywords有機化学反応 / 量子化学 / シミュレーション / 遷移状態 / 溶媒効果
Research Abstract

A combined computational-experimental study was carried out to examine dynamics effects in organic reactions. A fragment molecular orbital-molecular dynamics method (FMO-MD) was developed and used to analyze microscopic reaction mechanisms, in particular the active role of solvent molecules, in amination and hydration reactions of aldehyde in water. Ab initio MD simulations were performed for selected organic reactions, such as molecular rearrangement, elimination, addition, and substitution reactions. These computational studies revealed that the reaction products were determined through path bifurcation after the rate-determining transition state. Experimental studies using kinetic measurements and product analyses gave the results that supported the conclusion on the basis of the MD simulations. These results demonstrated that reaction dynamics play important role in determining the reaction mechanism and may require modification of the traditional transition state theory.

  • Research Products

    (14 results)

All 2014 2013 2012 2011 2010

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (4 results) Book (1 results)

  • [Journal Article] Electron- Correlated Fragment-Molecular-Orbital Calculations for Biomolecular and Nano Systems2014

    • Author(s)
      S. Tanaka, Y. Mochizuki, Y. Komeiji, Y. Okiyama, K. Fukuzawa
    • Journal Title

      Phys. Chem. Chem. Phys

      Volume: 16 Pages: 10310-10344

    • DOI

      10.1039/c4cp00316k

    • Peer Reviewed
  • [Journal Article] 分子シミュレーションによる有機反応機構解析 : 動力学的効果の検討2014

    • Author(s)
      佐藤 真, 山高 博
    • Journal Title

      有機合成化学協会誌

      Volume: Vol.72, No.4 Pages: 393-404

    • Peer Reviewed
  • [Journal Article] Mechanism of α-Ketol-Type Rearrangement of Benzoin Derivatives under Basic Conditions2013

    • Author(s)
      M. Karino, D. Kubouchi, K. Hamaoka, S. Umeyama, H. Yamataka
    • Journal Title

      J. Org. Chem

      Volume: 78 Pages: 7194-7198

    • DOI

      10.1021/jo401156h

    • Peer Reviewed
  • [Journal Article] Reaction Pathway and Rate-Determining Step of the Schmidt Rearrangement/Fragmentation : A Kinetic Study2012

    • Author(s)
      R. Akimoto, T. Tokugawa, Y. Yamamoto, H. Yamataka
    • Journal Title

      J. Org. Chem

      Volume: 77 Pages: 4073-4078

    • DOI

      10.1021/jo300419c

    • Peer Reviewed
  • [Journal Article] FMO-MD Simulations on Hydration of Formaldehyde in Water Solution with Constraint Dynamics2012

    • Author(s)
      M. Sato, H. Yamataka, Y. Komeiji, Y. Mochizuki
    • Journal Title

      Chem. Eur. J

      Volume: 18 Pages: 9714-9721

    • DOI

      10.1002/chem.201200874

    • Peer Reviewed
  • [Journal Article] Higher-order Correlated Calculations Based on Fragment Molecular Orbital Scheme2011

    • Author(s)
      Y. Mochizuki, K. Yamashita, T. Nakano, Y. Okiyama, K. Fukuzawa, N. Taguchi, S. Tanaka
    • Journal Title

      Theor. Chem. Acc

      Volume: 130 Pages: 515-530

    • DOI

      10.1007/s00214-011-1036-3

    • Peer Reviewed
  • [Journal Article] Dynamic Path Bifurcation in the Beckmann Reaction : Support from Kinetic Analyses2011

    • Author(s)
      Y. Yamamoto, H. Hasegawa, H. Yamataka
    • Journal Title

      J. Org. Chem

      Volume: 76 Pages: 4652-4660

    • DOI

      10.1021/jo200728t

    • Peer Reviewed
  • [Journal Article] Dynamics Effects on E2/E1cb Borderline Mechanism. Unimolecular Elimination of 2-Aryl-3- chloro-2-R-propanols2011

    • Author(s)
      S. Itoh, H. Yamataka
    • Journal Title

      Chem. Eur. J

      Volume: 17 Pages: 1230-1237

    • DOI

      10.1002/chem.201001926

    • Peer Reviewed
  • [Journal Article] Reaction Pathways and Possible Path Bifurcation for the Schmidt Reaction2010

    • Author(s)
      T. Katori, S. Itoh, M. Sato, H. Yamataka
    • Journal Title

      J. Am. Chem. Soc

      Volume: 132 Pages: 3413-3422

    • DOI

      10.1021/ja908899u

    • Peer Reviewed
  • [Presentation] Explicit Solvation Modulates Intra- and Inter-Molecular Interactions Within DNA : Electronic Aspects Revealed by the Ab Initio Fragment Molecular Orbital (FMO) Method2014

    • Author(s)
      K. Fukuzawa, I. Kurisaki, C. Watanabe, Y. Okiyama, Y. Mochizuki, S. Tanaka, Y. Komeiji
    • Organizer
      58th Annual Meeting of Biophysical Society
    • Place of Presentation
      San Francisco, USA
    • Year and Date
      2014-02-15
  • [Presentation] Reaction Pathway, Rate-Determining Step, and Possible Path Bifurcation of the Schmidt Reaction2012

    • Author(s)
      R. Akimoto, T. Tokugawa, Y. Yamamoto, and H. Yamataka
    • Organizer
      21th IUPAC Conference on Physical Organic Chemistry
    • Place of Presentation
      Durham, UK
    • Year and Date
      2012-09-09
  • [Presentation] Combined Experimental-Computational Study on the Reaction Pathway of α-Haloacetophenones with Nucleophiles : Possible Path Bifurcation in Addition/Substitution Mechanism2011

    • Author(s)
      S. Itoh, M. Katayama, K. Sasagawa, N. Yoshimura, M. Sato, H. Yamataka
    • Organizer
      13th European Symposium on Organic Reactivity
    • Place of Presentation
      Tallinn, Estonia
    • Year and Date
      2011-09-12
  • [Presentation] A Theoretical Study of Borderline Mechanism of Nucleophilic Addition/Substitution Reaction of α-bromoacetophenone2010

    • Author(s)
      S. Itoh, H. Yamataka
    • Organizer
      International Conference on Physical Organic Chemistry
    • Place of Presentation
      Pusan, South Korea
    • Year and Date
      2010-08-28
  • [Book] フラグメント分子軌道法と分子動力学シミュレーション レアメタル・希少金属リサイクル技術の最先端2011

    • Author(s)
      望月祐志, 古明地勇人
    • Total Pages
      313(187-204)
    • Publisher
      フロンティア出版

URL: 

Published: 2015-06-25  

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