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2013 Fiscal Year Final Research Report

Eco-omics analyse of microbial sulfur cycle in aquatic environments of cryosphere

Research Project

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Project/Area Number 22370005
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Ecology/Environment
Research InstitutionHokkaido University

Principal Investigator

FUKUI Manabu  北海道大学, 低温科学研究所, 教授 (60305414)

Co-Investigator(Kenkyū-buntansha) KOJIMA Hisaya  北海道大学, 低温科学研究所, 助教 (70400009)
Project Period (FY) 2010-04-01 – 2014-03-31
Keywords硫黄循環 / メタゲノム / プロテオミクス / 硫酸還元 / 湖沼 / 硫黄酸化 / 機能遺伝子 / 群集構造
Research Abstract

Microbial sulfur cycle in aquatic systems of cryosphere is still unclear although the significance of systems linking carbon and nitrogen cycles has been pointed out. Analysis of aprA gene, which encodes a key enzyme in dissimilatory sulfate reduction and sulfur oxidation, showed that newly isolated Sulfuricella denitrificans-like sulfur oxidizer is a key species from geographically distant lakes in Antarctica and Japan. The complete genome sequence analysis indicated their unique sulfur metabolic pathway adapting freshwater environment. The proteomics results suggest that maintenance of proper translation is critical for growth under low-temperature.

  • Research Products

    (14 results)

All 2013 2012 2011 2010 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (3 results) Remarks (1 results)

  • [Journal Article] Diversity of sulfur-cycle prokaryotes in freshwater lake sediments investigated using aprA as functional marker gene2013

    • Author(s)
      Tomohiro Watanabe, Hisaya Kojima, Yoshinori Takano and Manabu Fukui
    • Journal Title

      Systematic and Applied Microbiology

      Volume: 36 Pages: 436-443

    • DOI

      10.1099/ijs.0.051854-0

    • Peer Reviewed
  • [Journal Article] Desulfotomaculum intricatum sp. nov., a sulfate-reducer isolated from freshwater lake sediment2013

    • Author(s)
      Miho Watanabe, Hisaya Kojima and Manabu Fukui
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 63 Pages: 3574-3578

    • DOI

      10.1099/ijs.0.051854-0

    • Peer Reviewed
  • [Journal Article] Effects of temperature on successive anaerobic decomposition of high-molecular organic matter under sulfate-reducing conditions. Estuarine2013

    • Author(s)
      Takato Matsui, Hisaya Kojima, and Manabu Fukui
    • Journal Title

      Coastal and Shelf Science

      Volume: 119 Pages: 139-144

    • DOI

      10.1016/j.ecss.2013.01.003

    • Peer Reviewed
  • [Journal Article] Desulfatitalea tepidiphila gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from tidal flat sediment2013

    • Author(s)
      Yuriko Higashioka, Hisaya Kojima, Miho Watanabe and Manabu Fukui
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 63 Pages: 761-765

    • DOI

      10.1099/ijs.0.043356-0

    • Peer Reviewed
  • [Journal Article] Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium Sulfuricella denitrificans skB26 and proteomic insights into cold adaptation2012

    • Author(s)
      Tomohiro Watanabe, Hisaya Kojima, and Manabu Fukui
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 78 Pages: 6545-6549

    • DOI

      10.1128/AEM.01349-12

    • Peer Reviewed
  • [Journal Article] Filamentous sulfur-oxidizing bacteria of the genus Thioploca from Lake Tonle Sap in Cambodia2012

    • Author(s)
      Fumiko Nemoto, Hisaya Kojima, Akifumi Ohtaka and Manabu Fukui
    • Journal Title

      Aquatic Microbial Ecology

      Volume: 66 Pages: 295-300

    • DOI

      10.3354/ame01578

    • Peer Reviewed
  • [Journal Article] Diversity of freshwater Thioploca species and their specific association with filamentous bacteria of the phylum Chloroflexi2011

    • Author(s)
      Fumiko Nemoto, Hisaya Kojima, and Manabu Fukui
    • Journal Title

      Microbial Ecology

      Volume: 62 Pages: 753-764

    • DOI

      10.1007/s00248-011-9916-6

    • Peer Reviewed
  • [Journal Article] Temperature-dependent differences in community structure of bacteria involved in degradation of petroleum hydrocarbons under sulfate-reducing conditions2011

    • Author(s)
      Yuriko Higashioka, Hisaya Kojima and Manabu Fukui
    • Journal Title

      Journal of Applied and Microbiology

      Volume: 110 Pages: 314-322

    • DOI

      10.1111/j.1365-2672.2010.04886.x

    • Peer Reviewed
  • [Journal Article] Sulfuricella denitrificans gen. nov., sp. nov., a novel sulfur-oxidizing autotroph isolated from a freshwater lake2010

    • Author(s)
      Hisaya Kojima, and Manabu Fukui
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 60 Pages: 2862-2866

    • DOI

      10.1099/ijs.0.016980-0

    • Peer Reviewed
  • [Journal Article] Vertical distribution of major sulfate-reducing bacteria in a eutrophic shallow meromictic lake

    • Author(s)
      Kyoko Kubo, Hisaya Kojima, and Manabu Fukui
    • Journal Title

      Systematic and Applied Microbiology

      Volume: (in press)

    • Peer Reviewed
  • [Presentation] 水界の硫黄循環システムと微生物群集2013

    • Author(s)
      福井 学
    • Organizer
      日本進化学会第15回大会
    • Place of Presentation
      茨城県つくば市(筑波大 学)
    • Year and Date
      2013-08-30
  • [Presentation] 脱窒とカップリングした嫌気 的メタン酸化2012

    • Author(s)
      福井 学
    • Organizer
      日本微生物生態学会第28回大会
    • Place of Presentation
      愛知県豊橋市(豊橋科学技術大学)
    • Year and Date
      2012-09-21
  • [Presentation] 水界の硫黄循環システムと微生物群集2012

    • Author(s)
      福井 学
    • Organizer
      地球惑星科学合同大会2012年度大会
    • Place of Presentation
      千葉県船橋市(幕張メッセ)
    • Year and Date
      2012-05-24
  • [Remarks]

    • URL

      http://www.lowtem.hokudai.ac.jp/micro-ecol/MicroEcol.htm

URL: 

Published: 2015-06-25  

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