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2013 Fiscal Year Final Research Report

Evolutionary mechanisms of the gastrula organizer and blastopore formation by focusing on the gene regulatory network

Research Project

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Project/Area Number 22370075
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Developmental biology
Research InstitutionThe University of Tokyo

Principal Investigator

TAIRA Masanori  東京大学, 理学(系)研究科(研究院), 准教授 (60150083)

Project Period (FY) 2010-04-01 – 2013-03-31
Keywordsクロマチン免疫沈降 / 原腸胚オーガナイザー / ネッタイツメガエル / アフリカツメガエル
Research Abstract

In early vertebrate development, the basic body plan is established by the gastrula organizer. To examine the role of several transcription factors that play a central role in this important tissue as well as its evolutionary scenario, we carried out chromatin-immunoprecipitation sequencing (ChIP-seq) analysis using Xenopus gastrula embryos. The data suggest that transcription factors Otx2, Lim1/Lhx1, Gsc, and Sia combinatorially bind to gene regulatory regions, and positively and negatively regulate several hundreds of genes. In addition, comparative functional analysis of regulatory regions between Xenopus and an ancient type of vertebrates, amphioxus, suggest a scenario, in which evolution in activities of regulatory regions of some organizer genes contributed for the vertebrate ancestor to have acquired the head structure.

  • Research Products

    (23 results)

All 2014 2013 2012 2011 2010 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (18 results) Remarks (1 results)

  • [Journal Article] Occupancy of Tissue-Specific cis-Regulatory Modules by Otx2 and TLE/Groucho for Embryonic Head Specification2014

    • Author(s)
      Yasuoka Y., Suzuki Y., Takahashi S., Sudou N., Haramoto Y., Tando Y., Kubokawa K., Cho K. W., Asashima M., Sugano S., and Taira M.
    • Journal Title

      Nat. Commun

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann–Mangold organizer2012

    • Author(s)
      Sudou N., Yamamoto S., Ogino H., and Taira M.
    • Journal Title

      Development

      Volume: 139 Pages: 1651-1661

    • DOI

      10.1242/dev.068395

    • Peer Reviewed
  • [Journal Article] The medaka enhancer mutant for zic1/zic4 provides molecular insights into teleost caudal fin evolution2012

    • Author(s)
      Moriyama Y., Kawanishi T., Nakamura R., Tsukahara T., Sumiyama K., Suster M., Kawakami K., Toyoda A., Fujiyama A., Yasuoka Y., Nagao Y., Sawatari E., Shimikzu A., Wakamatsu Y., Hibi M., Taira M., Okabe M., Naruse K., Hashimoto H., Shimada A., Takeda H.
    • Journal Title

      Curr. Biol.

      Volume: 22 Pages: 601-607

    • DOI

      10.1016/j.cub.2012.01.063

    • Peer Reviewed
  • [Journal Article] Comparison of Lim1 expression in embryos of frogs with different modes of reproduction2010

    • Author(s)
      Venegas-Ferrin M., Sudou N., Taira M., and del Pino E. M.
    • Journal Title

      Int. J. Dev. Biol.

      Volume: 54 Pages: 195-202

    • DOI

      10.1387/ijdb.092870mv.

    • Peer Reviewed
  • [Presentation] 転写因子SiamoisのChIP-seq解析による頭部オーガナイザー形成機構の研究2014

    • Author(s)
      本田裕樹,桐ヶ谷嘉章,安岡有理,今井紗綾,鈴木穣,高橋秀治,浅島誠,菅野純夫,平良眞規
    • Organizer
      第8回日本ツメガエル研究会首都圏研究集会
    • Place of Presentation
      横浜市大
    • Year and Date
      2014-03-16
  • [Presentation] ChIP-seq analysis of Transcription factor Siamois for mechanisms of head organizer formation2013

    • Author(s)
      Honda Y., Kirigaya Y., Yasuoka Y., Imai S., Suzuki Y., Takahashi S., Asashima M., Sugano S., and Taira M.
    • Organizer
      第36回分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      20131203-06
  • [Presentation] Otx2 and TLE/Groucho occupancy marks tissue-specific cis-regulatory modules for head specification2012

    • Author(s)
      Yasuoka Y., Suzuki Y., Takahashi S., Haramoto Y., Tando Y., Kubokawa K., Ken W., Cho Asashima M., Sugano S., and Taira M.
    • Organizer
      第35回分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      20121211-14
  • [Presentation] Massively parallel regulation of head and non-head genes by Otx2, Lim1 and Gsc is based on evolution of the head organizer in the chordate2012

    • Author(s)
      Yasuoka Y., Suzuki Y., Takahashi S., Sudou N., Haramoto Y., Tando Y., Kubokawa K., Cho K. W., Asashima M., Sugano S., and Taira M.
    • Organizer
      日本発生生物学会第45回大会
    • Place of Presentation
      神戸
    • Year and Date
      20120528-31
  • [Presentation] ChIP-seq法を用いた内胚葉と中胚葉形成におけるVegTとMix1の役割の解析(Role of VegT and Mix1 during endoderm and mesoderm formation as assayed by ChIP-seq analysis)2011

    • Author(s)
      桐ケ谷嘉章,安岡有理,鈴木穣,高橋秀治,浅島誠,菅野純夫,平良眞規
    • Organizer
      第34回分子生物学会年会
    • Place of Presentation
      横浜市大
    • Year and Date
      20111213-16
  • [Presentation] Direct contributions of Otx2 as a positional tag to global gene regulation in the head organizer in Xenopus embryos2011

    • Author(s)
      Yasuoka Y., Suzuki Y., Takahashi S., Sudou N., Haramoto Y., Asashima M., Sugano S., and Taira M.
    • Organizer
      International Symposium"Genetic Regulation of Development"Commemorative of 27th International Prize for Biology, 2011, Celebrating Dr. Eric Davidson
    • Place of Presentation
      京都ガーデンパレス,京都
    • Year and Date
      20111130-1201
  • [Presentation] The molecular entity of positional information revealed by ChIP-sequence analysis for Lim1 and Otx2 in the head organizer and its application for evolutionary analysis(頭部オーガナイザーにおけるLim1とOtx2のChIP-sequence解析から明らかになった位置情報の分子実体とその進化解析への応用)2011

    • Author(s)
      Yasuoka Y., Sudou N., Takahashi S., Tando Y., Suzuki Y., Sugano S., Kubokawa K., Asashima M., and Taira M.
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄コンベンションセンター
    • Year and Date
      20110519-21
  • [Presentation] ChIPシーケンス解析で明らかとなった原腸胚オーガナイザーの遺伝子制御ネットワークにおけるLim1/Lhx1とOtx2の多機能性(Versatile functions of Lim1/Lhx1 and Otx2 in the gastrula organizer gene regulatory network revealed by ChIP-sequence analysis)2010

    • Author(s)
      安岡有理,須藤則広,鈴木穣,高橋秀治,原本悦和,浅島誠,菅野純夫,平良眞規
    • Organizer
      第33回分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      20101207-10
  • [Presentation] ChIP-sequence analysis for Lim1 and Otx2 in the Spemann-Mangold organizer2010

    • Author(s)
      Yasuoka Y., Sudou N., Suzuki Y., Takahashi S., Haramoto Y., Asashima M., Sugano S., and Taira M.
    • Organizer
      OIST Winter Course "Evolution of Complex Systems" (OWECS2010)
    • Place of Presentation
      OIST Seaside House,沖縄,恩納村
    • Year and Date
      20101205-12
  • [Presentation] Versatile functions of Lim1/Lhx1 and Otx2 in the gastrula organizer gene regulatory network revealed by ChIP-sequence analysis2010

    • Author(s)
      Yasuoka Y., Sudou N., Suzuki Y., Takahashi S., Haramoto Y., Asashima M., Sugano S., and Taira M.
    • Organizer
      13th International Xenopus Conference
    • Place of Presentation
      Lake Louise,Canada
    • Year and Date
      20100912-16
  • [Presentation] ChIP-sequence analysis for Lim1 and Otx2 in the Spemann-Mangold organizer2010

    • Author(s)
      Taira M.
    • Organizer
      13th International Xenopus Conference
    • Place of Presentation
      Lake Louise,Canada
    • Year and Date
      20100912-16
  • [Presentation] The integrated regulation of the cerberus gene by transcription factors downstream of Nodal, Wnt, and BMP in the Xenopus gastrula organizer(Xenopus原腸胚オーガナイザーのNodal、Wnt、BMPの下流転写因子群によるcerberus遺伝子の統合的な発現制御機構の解析)2010

    • Author(s)
      Sudou N., and Taira M.
    • Organizer
      日本発生生物学会第43回大会
    • Place of Presentation
      京都
    • Year and Date
      20100620-23
  • [Presentation] Evolutionary comparison of Lhx1 and Otx2 transcriptional regulatory networks in the gastrula organizer using chromatin immunoprecipitation (ChIP) analysis(原腸胚オーガナイザーにおけるLhx1とOtx2の転写制御ネットワークのChIP解析を用いた進化的比較)2010

    • Author(s)
      Yasuoka Y., Sudou N., Takahashi S., Tando Y., Suzuki Y., Sugano S., Kubokawa K., Asashima M., and Taira M.
    • Organizer
      日本発生生物学会第43回大会
    • Place of Presentation
      京都
    • Year and Date
      20100620-23
  • [Presentation] Evolution of the gastrula organizer of vertebrates and its transcriptional regulatory networks(脊椎動物原腸胚オーガナイザーと転写制御ネットワークの進化)2010

    • Author(s)
      Taira M.
    • Organizer
      日本発生生物学会第43回大会
    • Place of Presentation
      京都
    • Year and Date
      20100620-23
  • [Presentation] Molecular mechanisms of the regulation of rax expression by the inner nuclear membrane protein Nemp1 in vertebrate eye development2010

    • Author(s)
      Shibano T., Mamada H., Sudou N., Hakuno F., Takahashi S.-I., and Taira M.
    • Organizer
      The 2010 CSHL Symposium on Nuclear Organization & Function
    • Place of Presentation
      Cold Spring Harbor, U.S.A.
    • Year and Date
      20100602-07
  • [Presentation] 脊椎動物原腸胚オーガナイザーにおける転写制御ネットワークとその進化(The overview of transcriptional networks in the vertebrate gastrula organizer and its evolution)2010

    • Author(s)
      安岡有理,須藤則広,高橋秀治,鈴木穣,丹藤由希子,窪川かおる,菅野純夫,浅島誠,平良眞規
    • Organizer
      日本動物学会第81回東京大会
    • Place of Presentation
      東京大学,駒場
    • Year and Date
      2010-09-23
  • [Presentation] 脊椎動物の頭部オーガナイザー獲得に関わるエンハンサー進化2010

    • Author(s)
      安岡有理,丹藤由希子,窪川かおる,平良眞規
    • Organizer
      第12回日本進化学会年大会
    • Place of Presentation
      東京工業大学
    • Year and Date
      2010-08-03
  • [Presentation] Xenopus原腸胚オーガナイザーのNodal、Wnt、BMPの下流転写因子群によるcerberus遺伝子の統合的な発現制御機構の解析2010

    • Author(s)
      須藤則広,平良眞規
    • Organizer
      Xenopus若手ワークショップ(第4回日本ツメガエル研究集会)日本発生生物学会第43回大会サテライトミーティング
    • Place of Presentation
      京都
    • Year and Date
      2010-06-19
  • [Remarks]

    • URL

      http://www.biol.s.u-tokyo.ac.jp/users/lmb/public_html/index.php?Home

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Published: 2015-07-16  

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