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2012 Fiscal Year Final Research Report

Function and regulation of D-amino acid biosystem in eukaryote

Research Project

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Project/Area Number 22380058
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionNagoya University

Principal Investigator

YOSHIMURA Tohru  名古屋大学, 生命農学研究科, 教授 (70182821)

Co-Investigator(Kenkyū-buntansha) HEMMI Hisashi  名古屋大学, 大学院・生命農学研究科, 准教授 (60302189)
Project Period (FY) 2010 – 2012
KeywordsD-アミノ酸 / D-セリン / D-アスパラギン酸 / Dictyostelium discoidium / D-セリンデヒドラターゼ / セリンラセマーゼ
Research Abstract

In these studies, we examined the role of zinc in the D-serine dehydratase of Saccharomycescerevisiae. We also studied the reaction mechanism of serine racemase of a slime cellularmold, Dictyostelium discoidium, and found that the enzyme reaction proceeds through thetwo-base mechanism with Lys56 and Ser81. In order to clarify the role of D-aspartatein mammals, we cloned the gene of mouse GOT1L1, which was suggested to be an asparateracemase, and attempted to purify the protein. We also studied the D-serine metabolismin D. discoidium to understand the role of D-serine in development. We constructed themutant D. discoidium cells lacking D-serine dehydratase, which is responsible for theD-serine degradation. The mutant cells contained D-serine at their multicellular stageand showed the defects in fruiting body formation. We also constructed the polyethyleneglycol-modified D-serine dehydratase, which can be a tool for the in vivo D-serinedegradation. The modified enzyme exhibited a decreased immunogenicity.

  • Research Products

    (10 results)

All 2013 2012 2011 2010

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (5 results)

  • [Journal Article] Catalyticmechanism of serine racemase fromDictyostelium discoideum.2013

    • Author(s)
      Ito T, Maekawa M, Hayashi S, Goto M,Hemmi H, Yoshimura T
    • Journal Title

      Amino Acids

      Volume: 44 Pages: 1073-1084

    • DOI

      DOI:10.1007/s00726-012-1442-4

    • Peer Reviewed
  • [Journal Article] Role of Zinc Ion for CatalyticActivity in D-Serine Dehydratase fromSaccharomyces cerevisiae2013

    • Author(s)
      Ito T, Koga K, Hemmi H, YoshimuraT.
    • Journal Title

      FEBS Journal

      Volume: 279 Pages: 612-624

    • DOI

      DOI:10.1111/j.1742-4658.2011.08451.x

    • Peer Reviewed
  • [Journal Article] Metal ion dependency ofserine racemase from Dictyosteliumdiscoideum2012

    • Author(s)
      Ito T, Murase H, Maekawa M, Goto M,Hayashi S, Saito H, Maki M, Hemmi H,Yoshimura T
    • Journal Title

      Amino acids

      Volume: 879 Pages: 3190-3195

    • URL

      http://link.springer.com/article/10.1007%2Fs00726-012-1232-z

    • Peer Reviewed
  • [Journal Article] Lysine racemase from a lactic acid bacterium, Oenococcus oeni: Structuralbasis of substrate specificity2012

    • Author(s)
      Kato S, Hemmi H, Yoshimura T
    • Journal Title

      J. Biochem.

      Volume: 152 Pages: 505-508

    • URL

      http://jb.oxfordjournals.org/content/152/6/505.long

    • Peer Reviewed
  • [Journal Article] Simultaneous determination ofD-amino acids by the coupling method ofD-amino acid oxidase withhigh-performance liquid chromatography2012

    • Author(s)
      Kato S, Kito Y, Hemmi H, Yoshimura T
    • Journal Title

      J.Chromat

      Volume: B 879 Pages: 3190-3195

    • DOI

      DOI:10.1016/j.jchromb.2010.12.005

    • Peer Reviewed
  • [Presentation] D-アミノ酸代謝関連酵素を用いたD-アミノ酸の定量と機能性評価2012

    • Author(s)
      吉村 徹, 加藤 志郎, 伊藤 智和, 邊見久
    • Organizer
      第64回日本生物工学会シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2012-10-24
  • [Presentation] D-Amino acid as a novelbiofactor2012

    • Author(s)
      Yoshimura T
    • Organizer
      103rd AOCS Annual meeting &Expo
    • Place of Presentation
      Long Beach (USA)
    • Year and Date
      2012-05-01
  • [Presentation] D-アミノ酸研究の展開と展望:分布、機能、代謝、食品・医薬への応用へ2012

    • Author(s)
      吉村 徹
    • Organizer
      日本農芸化学会2012年度大会ランチョンセミナー
    • Place of Presentation
      京都
    • Year and Date
      2012-03-25
  • [Presentation] 真核生物のD-アミノ酸代謝関連酵素2011

    • Author(s)
      吉村 徹
    • Organizer
      第84回日本生化学会大会シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2011-09-24
  • [Presentation] Eukaryotic D-serinedehydratase and its application toD-serine assay2010

    • Author(s)
      Tohru Yoshimura
    • Organizer
      The 65th West LakeInternational Symposium of ZhejianUniversity
    • Place of Presentation
      Zhejian(China)
    • Year and Date
      2010-11-20

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Published: 2014-08-29  

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