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2013 Fiscal Year Final Research Report

Adaptation and evolution along latitudinal cline of circumpolar element plants

Research Project

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Project/Area Number 22405013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

SETOGUCHI Hiroaki  京都大学, 人間・環境学研究科(研究院), 教授 (70206647)

Co-Investigator(Kenkyū-buntansha) IKEDA Hajime  岡山大学, 資源植物科学研究所, 助教 (70580405)
FUJII Noriyuki  熊本大学, 大学院自然科学研究科, 准教授 (40305412)
AZUMA Hiroshi  京都大学, 大学院理学研究科, 助教 (50362439)
Project Period (FY) 2010-04-01 – 2014-03-31
Keywords系統地理学 / 周極高山植物 / 適応 / 環境 / フィトクロム / 緯度 / 開花 / 起源
Research Abstract

Photoreceptors such as phytochromes and cryptochromes regulate germination and flowering via light signals, and play essential roles for plants by sensing surrounding environments and being able to present appropriate responses are essential for both survival and reproductive success of plants. We investigated PHYE alleles in Japanese endemic Cardamine nipponica and its sister taxon, C. bellidifolia, in higher latitude. PHYE alleles of C. nipponica from Northern Japan formed a robust clade with those of C. bellidifolia, while C. nipponica in central Japanese harbored isolated PHYE gene alleles. This study demonstrates that persistence of ancestral alleles can be attributed to the intraspecific variation in PHYE, representing a notable evolutionary process of phytochromes according to the environment factors in each latitude. These studies were conducted under collaboration between the Russian Academy of Sciences and/or Oslo University.

  • Research Products

    (24 results)

All 2014 2013 2012 Other

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (5 results) Remarks (1 results)

  • [Journal Article] Molecular evidence of ancient relicts of arctic-alpine plants in East Asia2014

    • Author(s)
      Ikeda, H., Barkalov, V., Yakubov, V.V., Setoguchi, H.
    • Journal Title

      New Phytologists

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Development of SSR markers for Vitex rotundifolia (Verbenaceae), an endangered coastal plant isolated in Lake Biwa, Japan2014

    • Author(s)
      Ohtsuki, T., Shoda, T., Kaneko, Y., Setoguchi, H.
    • Journal Title

      Applications in Plant Sciences

      Volume: 2(4) Pages: 1300100

    • DOI

      10.3732/apps.1300100

    • Peer Reviewed
  • [Journal Article] Genetic differentiation and genetic diversity of Castanopsis (Fagaceae), the dominant tree species in Japanese broadleaved evergreen forests, revealed by analysis of EST associated microsatellites2014

    • Author(s)
      Aoki, K., Ueno, S., Kamijo, T., Setoguchi, H., Murakami, N., Tsumura, Y.
    • Journal Title

      PlosOne

      Volume: 9 Pages: e87429

    • DOI

      10.1371/journal.pone.0087429

    • Peer Reviewed
  • [Journal Article] Geographical differentiation inferred from flavonoid content between coastal and freshwater populations of the coastal plant Lathyrus japonicus (Fabaceae)2013

    • Author(s)
      Ohtsuki, T., Murai, S., Iwashina, T. Setoguchi, H.
    • Journal Title

      Biochemical Systematics and Ecology

      Volume: 51 Pages: 243-250

    • DOI

      10.1016/j.bse.2013.09.004

    • Peer Reviewed
  • [Journal Article] Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene2013

    • Author(s)
      Higashi, H., Sakaguchi, S., Ikeda, H., Isagi, Y., Setoguchi, H.
    • Journal Title

      Botanical Journal of the Linnean Society

      Volume: 173 Pages: 46-63

    • DOI

      10.1111/boj.12074

    • Peer Reviewed
  • [Journal Article] Recent colonization by a coastal plant of inland habitats at an ancient freshwater lake, Lake Biwa : multilocus sequencing and a demographic history of Lathyrus japonicus (Fabaceae)2013

    • Author(s)
      Ohtsuki, T., Ikeda, H., Setoguchi, H.
    • Journal Title

      Ecology and Evolution

      Volume: 3 Pages: 654 (1-12)

    • DOI

      10.1002/ece3.654

    • Peer Reviewed
  • [Journal Article] A multilocus sequencing approach reveals the cryptic phylogeographic history of Phyllodoce nipponica Makino (Ericaceae)2013

    • Author(s)
      Ikeda, H., Setoguchi, H.
    • Journal Title

      Biological Journal of the Linnean Society

      Volume: 110 Pages: 214-226

    • DOI

      10.1111/bij.12116

    • Peer Reviewed
  • [Journal Article] Phylogeographic study of Phyllodoce aleutica (Ericaceae) in the Japanese archipelago2013

    • Author(s)
      Ikeda, H., Setoguchi, H.
    • Journal Title

      Bulletin of the National Science Museum of Nature and Science, Series B

      Volume: 39 Pages: 87-94

    • Peer Reviewed
  • [Journal Article] New microsatellite markers for Tricyrtis macrantha (Convallariaceae) and cross-amplification in closely related species2013

    • Author(s)
      Ohki, M., Setoguchi, H.
    • Journal Title

      Applications in Plant Sciences

      Volume: 1 Pages: 1200247

    • DOI

      10.3732/apps.1200247

    • Peer Reviewed
  • [Journal Article] Demographic histories of adaptively diverged riparian and non-riparian species of Ainsliaea (Asteraceae) inferred from coalescent analyses using nuclear loci2012

    • Author(s)
      Mitsui Y., Setoguchi H.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 12 Pages: 254 (1-14)

    • DOI

      10.1186/1471-2148-12-254

    • Peer Reviewed
  • [Journal Article] Genetic diversity of symbiotic cyanobacteriain Cycas revoluta (Cycadaceae)2012

    • Author(s)
      Yamada, S., Okubo, S., Miyashita, H., Setoguchi, H.
    • Journal Title

      FEMS Microbiology and Ecology

      Volume: 81 Pages: 696-706

    • DOI

      10.1111/j.1574-6941.2012.01403.x

    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Asarumleucosepalum (Aristolochiaceae), an endangered plant endemic to Tokunoshima Island in the Ryukyu Archipelago2012

    • Author(s)
      Matsuda, J., Setoguchi, H.
    • Journal Title

      Conservation Genetics Resources

      Volume: 4 Pages: 579-581

    • DOI

      10.1007/s12686-011-9596-z

    • Peer Reviewed
  • [Journal Article] Evolution of an alpine endemic plant at the arctic-alpine range periphery following Pleistocene climatic oscillation2012

    • Author(s)
      Ikeda, H., Carlsen, T., Fujii, N., Brochmann, C., Setoguchi, H.
    • Journal Title

      New Phytologist

      Volume: 194 Pages: 583-594

    • DOI

      10.1111/j.1469-8137.2012.04061.x

    • Peer Reviewed
  • [Journal Article] Polymorphism of DNA sequences of cryptochrome genes is not associated with the photoperiodic flowering of wildsoybean along a latitudinal cline2012

    • Author(s)
      Ishibashi, N., Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: 125 Pages: 483-488

    • DOI

      10.1007/s10265-011-0470-6

    • Peer Reviewed
  • [Journal Article] Population fragmentation caused randomly fixed genotype in each population of Arabidopsis kamchatica in the wildsoybean along a latitudinal cline2012

    • Author(s)
      Higashi, H., Ikeda, H., Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: 125 Pages: 483-488

    • DOI

      10.1007/s10265-011-0470-6

    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of Shortia sensu lato (Diapensiaceae) based on multiple nuclear sequences

    • Author(s)
      Higashi, H., Ikeda, H., Setoguchi, H.
    • Journal Title

      Plant Systematics and Evolution

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Polymorphisms of E1 and GIGANTEAin wild populations of Lotus japonicus

    • Author(s)
      Wakabayashi, T., Oh, H., Kawaguchi, M., Harada, K., Sato, S., Ikeda, H. Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Reclassification of Schizocodon sildanelloides var. minimus (Diapensiaceae)

    • Author(s)
      Higashi, H., Setoguchi, H.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: (in press)

    • Peer Reviewed
  • [Presentation] ツガザクラ属Phyllodoce の分子系統解析と日本固有高山植物ツガザクラPhyllodoce nipponica の起源2013

    • Author(s)
      池田啓,Valentin Yakubov,Viachenslav Barkalov,Marr Kendrik,瀬戸口浩彰
    • Organizer
      日本植物学会第77大会
    • Place of Presentation
      北海道大学,札幌
    • Year and Date
      20130913-15
  • [Presentation] Pleistocene speciation and biogeographic history of arctic-alpine plant2013

    • Author(s)
      Ikeda, H., Yakubov, V., Barkalov, V., Setoguchi, H.
    • Organizer
      ESBE 2013 XIV : Congress of the European Society for Evolutionary Biology
    • Place of Presentation
      The University of Lisbon, Lisbon, Portugal
    • Year and Date
      20130819-24
  • [Presentation] Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene2013

    • Author(s)
      Higashi, H., Sakaguchi, S., Ikeda, H., Isagi, Y., Setoguchi, H.
    • Organizer
      The 11^<th> IntEcol (The International Association for Ecology) 2013
    • Place of Presentation
      London, UK
    • Year and Date
      20130818-23
  • [Presentation] Unique genetic structure of an varctic-alpine plant, Vaccinium vitis-idaea (Ericaceae), in the Japanese archipelago2013

    • Author(s)
      Ikeda, H., Higashi, H., Brochmann, C., Setoguchi, H.
    • Organizer
      日本生態学会
    • Place of Presentation
      静岡県コンベンションアーツセンター
    • Year and Date
      20130305-09
  • [Presentation] Molecular evolution of photoreceptor genes between sister species2012

    • Author(s)
      Ikeda, H., Gustafsson, L., Brochmann, C., Setoguchi, H.
    • Organizer
      Evolution Ottawa (1^<st> Joint Congress on Evolutionary Biology : American Society of Naturalist, European Society for Evolutionary Biology, Society of the Study of Evolution, Society of Systemtic Biologist, Canadian Society of Systematic Biologists)
    • Place of Presentation
      Ottawa, Canada
    • Year and Date
      20120706-10
  • [Remarks]

    • URL

      http://setolab.h.kyoto-u.ac.jp

URL: 

Published: 2015-06-25  

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