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2012 Fiscal Year Final Research Report

Extensive investigation of the ring puckering paths of Glucose using quantum chemical calculation and the molecular design of cellulase

Research Project

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Project/Area Number 22500272
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionYokohama National University

Principal Investigator

UEDA Kazuyoshi  横浜国立大学, 大学院・工学研究院, 教授 (40223458)

Project Period (FY) 2010 – 2012
Keywordsコンピューターシミュレーション
Research Abstract

The purpose of this work is to clarify the whole processes of the inter-conversion of the ring conformations of the glucopyranose ring using quantum mechanics calculation. The inter-conversion process can be represented by using Clemer-Pople parameter which is shown by the degrees of the latitude and the longitude on the surface of the globe. The results of this work indicated that there are many pathways which connect north pole 4C1 conformation and south pole 1C4 structure. It also found their transition structures of those paths. This information will help to consider the application of carbohydrate to the industrial use.

  • Research Products

    (13 results)

All 2012 2011 2010

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (1 results)

  • [Journal Article] Importance of the CH/? hydrogen bond in the enhancement of CD amplitude of exomethylene steroids2012

    • Author(s)
      Osamu Takahashi, Katsuyoshi Yamasaki, Yuji Kohno, Kazuyoshi Ueda, and Motohiro Nishio
    • Journal Title

      RSC Advances

      Volume: 2 Pages: 10891-10898

    • Peer Reviewed
  • [Journal Article] Experimental and theoretical investigation of proton exchange reaction between protic ionic liquid diethylmethylammonium trifluoromethanesulfonate and H2O2012

    • Author(s)
      Kazuki Mori, Takanori Kobayashi, Kazuhisa Sakakibara, and Kazuyoshi Ueda
    • Journal Title

      Chemical Physics Letters

      Volume: 552 Pages: 58-63

    • Peer Reviewed
  • [Journal Article] Structure and orientation of bovine lactoferrampin in the bacterial membrane as revealed by Solid-State NMR and molecular dynamics simulation.2012

    • Author(s)
      Atsushi Tsutsumi, Namsrai Javkhlantugs, Atsushi Kira, Masako Umeyama, Izuru Kawamura, Kazuyoshi Ueda and Akira Naito
    • Journal Title

      Biophys. J.

      Volume: 103 Pages: 1735-1743

    • Peer Reviewed
  • [Journal Article] Gromacsのための計算支援ソフトGISPの開発2012

    • Author(s)
      森一樹、樺島智大、源聡、玉城哲平、上田一義
    • Journal Title

      J. Comput. Chem. Soc. Jpn

      Volume: 11 Pages: 98-103

    • Peer Reviewed
  • [Journal Article] Conformational analysis of an extracellular polysaccharide produced by Sphaerotilus natans2012

    • Author(s)
      Keiko Kondo, Minoru Takeda, Masato Katahira, Jun-ichi Koizumi, and Kazuyoshi Ueda
    • Journal Title

      Carbohydrate Research

      Volume: 360 Pages: 102-108

    • Peer Reviewed
  • [Journal Article] Ab initio studies of the crystal structure of cellulose triacetate I.2012

    • Author(s)
      Takanori Kobayashi, Daichi Hayakawa, Tegshjargal Khishigjargal and Kazuyoshi Ueda
    • Journal Title

      MRS Online Proceedings Library

      Volume: 1470 Pages: mrss12-1470-xx03-05

    • DOI

      doi:10.1557/opl.2012.1204

    • Peer Reviewed
  • [Journal Article] Rare gas bond property ofRg-Be2O2 and Rg-Be2O2-Rg (Rg = He, Ne, Ar, Kr and Xe) as a comparison withRg-BeO2012

    • Author(s)
      Takanori Kobayashi, Yuji Kohno, Toshiyuki Takayanagi, Kanekazu Seki, and Kazuyoshi Ueda
    • Journal Title

      Computational and TheoreticalChemistry

      Volume: 991 Pages: 48-55

    • Peer Reviewed
  • [Journal Article] Twisted Coordination Mode of Bis(N-Heterocyclic carbine) Ligands in Octahedral Geometry of Group 6 Transition Metal Complexes : Synthesis, Structure, and Reactivity2012

    • Author(s)
      Kenichi Ogata, Yoshitaka Yamaguchi, Youji Kurihara, Kazuyoshi Ueda, Hirotaka Nagao, Takashi Ito
    • Journal Title

      Inorganica Chimica Acta

      Volume: 390 Pages: 199-209

    • Peer Reviewed
  • [Journal Article] Supermolecular Structure of Cellulose/Amylose Blends Prepared from Aqueous NaOH Solutions and Effects of Amylose on Structural Formation of Cellulose from Its Solution2011

    • Author(s)
      Hitomi Miyamoto, Mariko Ago, Chihiro Yamane, Masaharu Seguchi, Kazuyoshi Ueda, and Kunihiko Okajima
    • Journal Title

      Carbohydr. Res.

      Volume: 346 Pages: 807-814

    • Peer Reviewed
  • [Journal Article] Molecular Dynamics Simulation of Bombolitin II in the Dipalmitoylphosphatidylcholine Membrane biyaer2011

    • Author(s)
      Namsrai Javkhlantugs, Akira Naito, Kazuyoshi Ueda
    • Journal Title

      Biophys. J.

      Volume: 101 Pages: 1212-1220

    • DOI

      Doi:10.1016/j.bpj.2011.07.018

    • Peer Reviewed
  • [Journal Article] Molecular dynamics simulation of the dissolution process of cellulose triacetate-II nano-size crystal in DMSO2011

    • Author(s)
      Daichi Hayakawa, Kazuyoshi Ueda, Chihiro YAMANE, Hitomi MIYAMOTO and Fumitaka HORII
    • Journal Title

      Carbohydr. Res

      Volume: 346 Pages: 2940-2947

    • DOI

      Doi:10.1016/j.carres.2011.10.019

    • Peer Reviewed
  • [Journal Article] Dynamic Structure of Bombolitin II Bound to Lipid Bilayers as Revealed by Solid-state NMR and Molecular-Dynamics Simulation2010

    • Author(s)
      Shuichi Toraya, Namsrai Javkhlantugs, Daisuke Mishima, Katsuyuki Nishimura, Kazuyoshi Ueda, Akira Naito
    • Journal Title

      Biophys. J.

      Volume: 99 Pages: 3282-3289

    • Peer Reviewed
  • [Presentation] 平成24年度神奈川県ものづくり技術交 流会予稿集、3PS-11,神奈川県産業技術セ ンター2012

    • Author(s)
      小林 正人、栗原 庸次、田一義
    • Organizer
      糖α-L-イドピラノースにおける環配座 変換の計算による解析
    • Year and Date
      20121107-1109

URL: 

Published: 2014-08-29  

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