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2012 Fiscal Year Final Research Report

Analysis of frequency specificity, oscillations and adaptation in a signaling pathway consisting of multiple signaling modules.

Research Project

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Project/Area Number 22680024
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Bioinformatics/Life informatics
Research InstitutionThe University of Tokyo

Principal Investigator

SAWAI Satoshi  東京大学, 大学院・総合文化研究科, 准教授 (20500367)

Project Period (FY) 2010 – 2012
Keywords生体情報 / 振動
Research Abstract

Adaptive and oscillatory response consisting of multiple time-scales was analyzed by taking an example from cAMP-induced cAMP relay-response in Dictyostelium. Based on quantitative live-cell imaging analysis, we found that the first peak can be considered as an output from a module that realizes fold-change detection. The prolonged response on the other hand depends on the absolute concentration of extracellular cAMP and appears to be dependent on F-actin mediated feedaback. We discussed the relationship between these observed properties and robustness of cell-cell signaling.

  • Research Products

    (18 results)

All 2013 2012 2011 2010

All Journal Article (5 results) Presentation (10 results) Book (3 results)

  • [Journal Article] Phase geometries oftwo-dimensional excitable wavesgovern self-organized morphodynamicsof amoeboid cells.2013

    • Author(s)
      D. Taniguchi, S. Ishihara, T. Oonuki,M. Honda-Kitahara, K. Kaneko and S.Sawai
    • Journal Title

      Proc. Natl. Acad.Sci. USA

      Volume: 110 Pages: 5016-5021. (Equalcontribution)

    • DOI

      DOI:073/pnas.1218025110

  • [Journal Article] The green tea catechinepigallocatechin gallate (EGCG) blocks cell motility, chemotaxis and development in Dictyostelium discoideum.2013

    • Author(s)
      K. J. McQuade, A. Nakajima, A. N.Ilacqua1, N. Shimada and S. Sawai.
    • Journal Title

      PLoS ONE

      Volume: 8(3) Pages: e59275.

    • DOI

      DOI:10.1371/journal.pone.0059275

  • [Journal Article] Robustness of Self-Organizing Chemoattractant Field Arising from Precise Pulse Induction of Its Breakdown Enzyme: A Single-Cell Level Analysis of PDE Expression in Dictyostelium.2013

    • Author(s)
      N. Masaki, K. Fujimoto, M.Honda-Kitahara, E. Hada and S. Sawai
    • Journal Title

      Biophys. J.

      Volume: 104 Pages: 1191-1202

    • DOI

      DOI:10.1016/j.bpj.2013.01.023

  • [Journal Article] The collective oscillations in developing cells: Insights from simple systems.2011

    • Author(s)
      K. Kamino, K. Fujimoto and S. Sawai
    • Journal Title

      Dev. Growth Diff.

      Volume: 53 Pages: 503-517

    • DOI

      DOI:10.1111/j.1440-169X.2011.01266.x.

  • [Journal Article] The onset of collective behavior in social amoebae.2010

    • Author(s)
      T. Gregor, K. Fujimoto, N. Masaki and S. Sawai
    • Journal Title

      Science

      Volume: 328 Pages: 1021-1025

    • DOI

      DOI:10.1126/science.1183415

  • [Presentation] 細胞性粘菌の1細胞レヘルの cAMP応答における cAMP受容体のリン酸化の役割2012

    • Author(s)
      井元大輔, 本多麻衣, 澤井哲
    • Organizer
      第5回定量生物学の会
    • Place of Presentation
      東京大学生産技術研究所、東京、日本
    • Year and Date
      2012-11-25
  • [Presentation] Phase response of the collective cAMP oscillations Dictyostelium discoideum and its implication to the adaptive properties2012

    • Author(s)
      D. Imoto & S. Sawai
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      大学東キャンハス、日本)
    • Year and Date
      2012-09-23
  • [Presentation] Processing and Self-organization in Developing Cell2012

    • Author(s)
      S. Sawai
    • Organizer
      CDB Symposium 2012 on Quantitative Developmental Biology "Information
    • Place of Presentation
      理化学研究所、神戸、日本
    • Year and Date
      2012-03-28
  • [Presentation] 生命システムの情報 処理 "Adaptive fold-change detection in chemotactic cells and its underlying network topology2011

    • Author(s)
      S. Sawai
    • Organizer
      第49回日本生物物理学会年会シンポジウム
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス、兵庫、日本
    • Year and Date
      2011-09-17
  • [Presentation] Single-cell level analysis of adaptive fold-changedetection in cAMP relay response2011

    • Author(s)
      K. Kamino, Y. Kondo & S. Sawai
    • Organizer
      The annual International Dictyostelium conference (Dicty2011)
    • Place of Presentation
      Radisson Cross Keys, ボルチモア、メリーランド州、米国
    • Year and Date
      2011-08-16
  • [Presentation] The adaptation of cAMP relay response in single Dictyostelium cells2011

    • Author(s)
      K. Kamino, K. Fujimoto and S. Sawai
    • Organizer
      The 5th Annual Q-bio Conference on Cellular Information Processing
    • Place of Presentation
      St. John's College, サンタフェ、 ニューメキシコ州、米国
    • Year and Date
      2011-08-12
  • [Presentation] Single-cell level analysis of adaptation in chemoattractantsignaling in Dictyostelium2010

    • Author(s)
      K. Kamino & S. Sawai
    • Organizer
      International Conference on Systems Biology (ICSB2010)
    • Place of Presentation
      EICC, エジンバラ、英国
    • Year and Date
      2010-10-13
  • [Presentation] 数理モデルとシミュレーション」"Single-cell level analysis of the adaptive cAMP response in Dictyostelium2010

    • Author(s)
      S. Sawai
    • Organizer
      CBI学会2010年大会オーガナイズドセッション
    • Place of Presentation
      学術総合センター 一橋記念講堂、東京、日本
    • Year and Date
      2010-09-17
  • [Presentation] 「バイオイメージングと定量生物学」「倍変化検出型の応答 とその集団振動における役割」2010

    • Author(s)
      澤井哲
    • Organizer
      第19回日本バイオイメージング学会シンポジウム
    • Place of Presentation
      慶応大学日吉キャンパス来往 舎、神奈川、日本
    • Year and Date
      2010-09-10
  • [Presentation] Quantitative biology of spatiotemporal dynamics in development" "Adaptation and de-adaptation kinetics underlying the synchronized oscillations in Dictyostelium2010

    • Author(s)
      S. Sawai
    • Organizer
      第43回発生生物学会シンポジウム
    • Place of Presentation
      京都国際会議場、京都、日本
    • Year and Date
      2010-06-22
  • [Book] 生細胞イメージング 細胞性粘菌(研究の新展開)モデル生物、創薬資源、バイオ2012

    • Author(s)
      澤井哲
    • Total Pages
      72-90
    • Publisher
      アイピーシー出版
  • [Book] 自己組織化の研究:細胞性粘菌の生物物理学 『細胞 性粘菌(研究の新展開)モデル生物、 創薬資源、バイオ』(阿部知顕、前田靖 男 編)第 8 章 p.2012

    • Author(s)
      中島昭彦 澤井哲
    • Total Pages
      423-454
    • Publisher
      アイピーシー出版
  • [Book] パターン形成リズムのデザイ ン細胞工学2011

    • Author(s)
      澤井哲
    • Total Pages
      1262-1267
    • Publisher
      秀潤社

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Published: 2014-08-29  

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