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2012 Fiscal Year Final Research Report

Development of algorithms for genome sequencing using next-generationDNA sequencers

Research Project

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Project/Area Number 22700307
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Bioinformatics/Life informatics
Research InstitutionThe University of Tokyo

Principal Investigator

KASAHARA Masahiro  東京大学, 大学院・新領域創成科学研究科, 講師 (60376605)

Project Period (FY) 2010 – 2012
Keywordsゲノム / アルゴリズム / ゲノムアセンブリ / 遺伝学的地図
Research Abstract

Genome sequencing using so-called next-generation DNA sequencers often results in rather fragmented sequences, and the positions of the fragmented sequences on chromosomes are usually unknown. We developed a system/algorithm that constructs a genetic map in a short time with less labor using next-generation DNA sequencers. Genetic maps generated by our algorithm can arrange fragmented sequences on chromosomes.

  • Research Products

    (2 results)

All 2011 2010

All Presentation (2 results)

  • [Presentation] Yet Another ShortRead AlignmentTool2011

    • Author(s)
      Masahiro Kasahara, YASRAT
    • Organizer
      The Biology of Genomes
    • Place of Presentation
      The United States of America
    • Year and Date
      2011-05-10
  • [Presentation] Yet-Another Sequence Alignment Tool2010

    • Author(s)
      Masahiro Kasahara, YASRAT
    • Organizer
      Joint Cold Spring Harbor Laboratory/Wellcome Trust Conference on Genome Informatics
    • Place of Presentation
      Hinxton, The United Kingdom
    • Year and Date
      2010-09-16

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Published: 2014-08-29  

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