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2011 Fiscal Year Final Research Report

Mechanism of catalytic nitric oxide reduction by membrane-bound nitric oxide reductase : comparison with oxygen reduction reaction

Research Project

  • PDF
Project/Area Number 22770136
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Functional biochemistry
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

TOSHA Takehiko  独立行政法人理化学研究所, 城生体金属科学研究室, 研究員 (00548993)

Research Collaborator PISLIAKOV Andrei  独立行政法人理化学研究所, 杉田理論生物化学研究室, 基礎科学特別研究員 (70565770)
ADELROTH Pia  ストックホルム大学, Department of Biochemistry & Biophysics, 准教授
Project Period (FY) 2010 – 2011
Keywords一酸化窒素 / 金属酵素 / 結晶構造解析 / 生体分子分光 / 膜タンパク質 / プロトンポンプ / ヘム
Research Abstract

Structures of reduced and CN-bound oxidized nitric oxide reductase(NOR), which is involved in anaerobic respiration chain, were determined by X-ray crystallography. Resonance Raman measurement indicated that the substrate, NO, bound to the active site heme in a bent conformation. The proton transfer mechanism was also examined by molecular dynamics simulation, suggesting the structural factor(s) controlling the catalytic proton transfer in NOR. These findings help us understanding the molecular mechanism of the NO reduction reaction in NOR and the functional conversion from NOR to aerobic respiration enzyme during the molecular evolution.

  • Research Products

    (15 results)

All 2012 2011 2010 Other

All Journal Article (5 results) (of which Peer Reviewed: 3 results) Presentation (8 results) Remarks (2 results)

  • [Journal Article] Proton Transfer in the Quinol-dependent Nitric Oxide Reductase from Geobacillus Stearothermophilus during Reduction of Oxygen2012

    • Author(s)
      L. Salomonsson, J. Reimann, T. Tosha, N. Krause, N. Gonska, Y. Shiro and P. Adelroth
    • Journal Title

      Biochim. Biophys. Acta

      Volume: (印刷中)

    • Peer Reviewed
  • [Journal Article] 一酸化窒素還元酵素の結晶構造から見えてきた呼吸酵素の機能変換2012

    • Author(s)
      日野智也,當舎武彦,城宜嗣
    • Journal Title

      生物物理

      Volume: (印刷中)

  • [Journal Article] Crystal Structure of Quinol-Dependent Nitric Oxide Reductase from Geobacillus Stearothermophilus2012

    • Author(s)
      Y. Matsumoto, T. Tosha, A. V. Pisliakov, T. Hino, H. Sugimoto, S. Nagano, Y. Sugita and Y. Shiro
    • Journal Title

      Nat. Struct. Mol. Biol

      Volume: 19 Pages: 238-245

    • Peer Reviewed
  • [Journal Article] Structural Basis for Nitrous Oxide Generation by Bacterial Nitric Oxide Reductases2012

    • Author(s)
      Y. Shiro, H. Sugimoto, T. Tosha, S. Nagano and T. Hino
    • Journal Title

      Phil. Trans. Royal Soc. B

      Volume: 367 Pages: 1195-1203

  • [Journal Article] Molecular Structure and Function of Bacterial Nitric Oxide Reductase2012

    • Author(s)
      T. Hino, S. Nagano, H. Sugimoto, T. Tosha and Y. Shiro
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1817 Pages: 680-687

    • Peer Reviewed
  • [Presentation] 緑膿菌由来シアン化型一酸化窒素還元酵素のX線結晶構造解析2011

    • Author(s)
      佐藤希美,當舎武彦,日野智也,杉本宏,左子芳彦,城宜嗣
    • Organizer
      平成23年度日本結晶学会
    • Place of Presentation
      札幌
    • Year and Date
      20111124-25
  • [Presentation] Spectroscopic characterization of the ferrous-NO form as a model of active species using Zn-substituted bacterial nitric oxide reductase2011

    • Author(s)
      N. Okada, T. Tosha, and Y. Shiro
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫
    • Year and Date
      20110916-18
  • [Presentation] Functional Role of Ca Ion in Nitric Oxide Reductase from Geobacillus Stearothermophilus2011

    • Author(s)
      T. Tosha, Y. Matsumoto, S. Nagano, and Y. Shiro
    • Organizer
      15th International Conference on Biological Inorganic Chemistry
    • Place of Presentation
      Vancouver, Canada
    • Year and Date
      20110807-12
  • [Presentation] 金属蛋白質における構造機能相関:蛋白質ならではの機能制御機構2011

    • Author(s)
      當舎武彦
    • Organizer
      錯体化学若手の会夏の学校2011
    • Place of Presentation
      羽咋
    • Year and Date
      20110731-0802
  • [Presentation] Structural basis for molecular evolution in respiratory enzymes : from NO reductase to O2 reductase2011

    • Author(s)
      T. Tosha
    • Organizer
      Mini Symposium on Energy Conversion in Bacteria
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2011-06-16
  • [Presentation] Quinol and Ca Binding Sites in Bacterial Nitric Oxide Reductase2010

    • Author(s)
      T. Tosha, Y. Matsumoto, S. Nagano, and Y. Shiro
    • Organizer
      Pacifichem2010
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      20101215-20
  • [Presentation] Construction of E. coli overexpression system for membrane-bound bacterial nitric oxide reductase2010

    • Author(s)
      T. Tosha, A. Kohara, Y. Shiro
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学
    • Year and Date
      20100920-22
  • [Presentation] 膜結合型一酸化窒素還元酵素におけるカルシウム結合部位の同定とその機能的役割2010

    • Author(s)
      當舎武彦,松本悠史,永野真吾,城宜嗣
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌
    • Year and Date
      20100616-18
  • [Remarks] 新着レビュー(発表論文37)松本悠史,當舎武彦,城宜嗣"キノール依存型一酸化窒素還元酵素の結晶構造からみた呼吸酵素の分子進化"

    • URL

      http://first.lifesciencedb.jp/archives/4335#more-4335

  • [Remarks] 理化学研究所プレスリリース"プロトンの通り道から呼吸酵素の起源にせまる-立体構造比較から呼吸酵素の分子進化を推測可能に-"

    • URL

      http://www.riken.jp/r-world/info/release/press/2012/120123/index.html

URL: 

Published: 2013-07-31  

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