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2023 Fiscal Year Research-status Report

Conformation of protein bound to membrane characterized by time-resolved vacuum-ultraviolet circular dichroism spectroscopy

Research Project

Project/Area Number 22K06163
Research InstitutionHiroshima University

Principal Investigator

松尾 光一  広島大学, 放射光科学研究センター, 准教授 (40403620)

Project Period (FY) 2022-04-01 – 2025-03-31
Keywords円二色性 / タンパク質 / 時間分解 / 放射光 / 生体膜
Outline of Annual Research Achievements

水溶性タンパク質の生体膜相互作用によるダイナミックな構造変化を明らかにすることは,生体膜上で様々な生命機能や物性の発現を理解するために重要である。このため我々は、膜結合タンパク質溶液と生体膜溶液を高効率に混合可能なマイクロ流路時間分解セルを開発し、真空紫外円二色性(VUVCD)分光法に実装し、生体膜相互作用研究のモデルタンパク質であるbetaラクトグロブリンの天然から膜結合構造に至る過程(速度・中間構造)を観測してきた。本年度は、この時間分解測定法(TR-VUVCD)をステロイドホルモンなどの薬物と結合するalpha1-酸性糖タンパク質(AGP)の生体膜との相互作用によるalpha‐beta構造転移の観測に応用した。生体膜にはlysoDMPG由来のミセルとDMPG由来のリポソーム(直径100nm)を使用し、VUVCDスペクトルを波長領域260-180nm、時間領域0.1-120secで測定した。溶媒条件は、AGPが強く膜結合する弱酸性(pH4.5)で行った。これらの相互作用において、模倣膜の曲率がAGPの構造変化の速さと、alphaヘリックス形成量と相関があることが示唆された。相互作用において静電的相互作用・疎水性相互作用のそれぞれが必要であることは判明していたが、曲率の関わる生体膜の疎水性内部の露出の程度が相互作用に大きな影響を与えていることが新しく判明した。また得られたTRスペクトルデータセットより、AGPが膜結合状態へ移行するまでの構造変化経路と静電的・疎水性相互作用の影響の議論が可能となった。

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

本研究では、すでに時間分解装置が放射光計測機に実装され、光学システムの評価などが標準試料により完了し、モデルタンパク質の膜相互作用実験にも応用されている。また、本システムを利用することで、膜内への薬物輸送機能を持つとされる膜結合性タンパク質などの構造機能研究が実施されている。さらに、本装置を利用したいくつかの共同研究他も開始したため、当初の計画以上に進展していると判断した。

Strategy for Future Research Activity

今後は、時間分解システムを用いて、alpha1酸性糖蛋白質(AGP)以外の生体膜との相互作用により重要な機能や物性をもつタンパク質の構造変化研究に応用していく。alpha-シヌクレイン(alpha-Syn)は,パーキンソン病の原因となるアミロイド線維を形成する膜結合蛋白質であり,その膜結合構造は線維形成に直接影響する。VUVCD 法よりalpha-Synの膜結合構造(小胞の模倣膜を使用)の二次構造含量・本数・配列を解析し,膜結合する領域や相互作用の種類(静電的・疎水的相互作用)を決定する。またTRCD によりalpha -Syn が膜結合構造に至るまでの速度や中間体の解析を行い,塩(NaCl)の効果を含めて膜相互作用の機構を明らかにする。家族性パーキンソン病を促進するとされる3 種の変異体 (A30P, E46K, A53T)の構造研究も行い,alpha-Syn の膜結合構造,膜相互作用機構,線維形成との関係性の解明を試みる。

Causes of Carryover

成果報告のための論文作成や投稿に必要な費用が次年度での支払いになったため、差額が生じた。また、次年度の成果報告費用に使用する予定である。

  • Research Products

    (37 results)

All 2024 2023 Other

All Int'l Joint Research (2 results) Journal Article (12 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 3 results) Presentation (21 results) (of which Int'l Joint Research: 21 results,  Invited: 1 results) Remarks (1 results) Funded Workshop (1 results)

  • [Int'l Joint Research] Universit de Lorraine(フランス)

    • Country Name
      FRANCE
    • Counterpart Institution
      Universit de Lorraine
  • [Int'l Joint Research] Department of Botany and Microbiology/NIOF/Botany and Microbiology Department(エジプト)

    • Country Name
      EGYPT
    • Counterpart Institution
      Department of Botany and Microbiology/NIOF/Botany and Microbiology Department
  • [Journal Article] Protein Preferential Solvation in (Sucralose + Water) Mixtures2024

    • Author(s)
      Kuroiwa I., Maki Y., Matsuo K., Annaka M.
    • Journal Title

      Journal of Physical Chemistry B

      Volume: 128 Pages: 676-683

    • DOI

      10.1021/acs.jpcb.3c06317

    • Int'l Joint Research
  • [Journal Article] Structural study of wild-type and phospho-mimic XRCC4 dimer and multimer proteins using circular dichroism spectroscopy2023

    • Author(s)
      Nishikubo K., Hasegawa M., Izumi Y., Fujii K., Matsuo K., Matsumoto Y., Yokoya A.
    • Journal Title

      International Journal of Radiation Biology

      Volume: 99 Pages: 1684-1691

    • DOI

      10.1080/09553002.2023.2214210

    • Peer Reviewed
  • [Journal Article] Complementary spectroscopy studies and potential activities of levan-type fructan produced by Bacillus paralicheniformis ND22023

    • Author(s)
      El Halmouch Y., Ibrahim H.A.H., Dofdaa N.M., Mabrouk M.E.M., El-Metwally M.M., Nehira T., Ferji K., Ishihara Y., Matsuo K., Ibrahim M.I.A.
    • Journal Title

      Carbohydrate Polymers

      Volume: 311 Pages: 120743

    • DOI

      10.1016/j.carbpol.2023.120743

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Lipid-membranes interaction, structural assessment, and sustainable production of polyhydroxyalkanoate by Priestia filamentosa AZU-A6 from sugarcane molasses2023

    • Author(s)
      Esmael M.E., Ibrahim M.I.A., Aldhumri S.A., Bayoumi R.A., Matsuo K., Khattab A.M.
    • Journal Title

      International Journal of Biological Macromolecules

      Volume: 242 Pages: 124721

    • DOI

      10.1016/j.ijbiomac.2023.124721

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Characterization of membrane-interaction mechanisms of proteins using vacuum-ultraviolet circular dichroism spectroscopy2023

    • Author(s)
      Kumashiro M., Matsuo K.
    • Journal Title

      Chirality

      Volume: 35 Pages: 826-837

    • DOI

      10.1002/chir.23607

    • Int'l Joint Research
  • [Journal Article] Molecular crowding effect on the RecA/DAN interactions2023

    • Author(s)
      R. Kim, K. Ito, S.K. Kim, K. Matsuo, M. Takahashi
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 78-79

  • [Journal Article] Secondary structure changes in FUS-LC causing liquid-liquid phase separation2023

    • Author(s)
      K. Fujii, N. Maita, K. Matsuo, M. Kato
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 70-81

  • [Journal Article] Secondary structure content of strawberry allergen Fra a1 treated at different temperatures2023

    • Author(s)
      Y. Ueyama, K. Matsuo, M. Nishino, K. Noda, M. Ishibashi, Y. Uno, Y. Nitta
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 82-83

  • [Journal Article] Synchrotron radiation circular dichroism study of exopolysaccharides from marine resources2023

    • Author(s)
      M.I.A. Ibrahim, H.A.H. Ibrahim, T. Haga, K. Matsuo, A.M. Gad
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 84-85

  • [Journal Article] Hydration structure of acetone studied with concentration-dependent absorption spectra in the ultraviolet region2023

    • Author(s)
      C. Sugahara, K. Matsuo, K. Okada
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 86-87

  • [Journal Article] Optical activity measurement of amino-acid films irradiated with circularly polarized Lyman-α light2023

    • Author(s)
      J-I Takahashi, M. Kobayashi, G. Fujimori, K. Kobayashi, H. Ota, K. Matsuo, M. Katoh, Y. Kebukawa, S. Yoshimura, H. Nakamura
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 88-89

  • [Journal Article] Impacts of lipid membranes on biopolymers’ structuration2023

    • Author(s)
      M.I.A. Ibrahim, M.E. Esmael, K. Matsuo, A.M. Khattab
    • Journal Title

      HiSOR Activity Report

      Volume: 2022 Pages: 90-91

  • [Presentation] Time-resolved analysis of the interaction process between β-lactoglobulin and membrane by vacuum-ultraviolet circular-dichroism spectroscopy2024

    • Author(s)
      S. Hashimoto, K. Matsuo
    • Organizer
      Biophysical Society 2024
    • Int'l Joint Research
  • [Presentation] Spectroscopic and theoretical characterization of the salt effect on the interaction between α‐Synuclein and membrane2024

    • Author(s)
      R. Imaura, Y. Kawata, K. Matsuo
    • Organizer
      Biophysical Society 2024
    • Int'l Joint Research
  • [Presentation] Recent Advancements in HiSOR-VUVCD Spectrophotometer for Characterizing Biomolecule Structures2024

    • Author(s)
      Koichi MATSUO
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] Diffraction of Optical Vortex from Undulator2024

    • Author(s)
      Yu Nishihara, Miho Shimada, Hiroshi Miyauchi, Koichi Matsuo, Masahiro Katoh
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] Secondary Structural Changes of FUS-LC induced with Phase-Separation observed by VUV-CD2024

    • Author(s)
      Kentaro Fujiia, Nobuo Maita, Koichi Matsuo, Masato Kato
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] Insights into Physical Interactions and Structuration in Self-Assembled Azapeptide Hydrogels Through Spectroscopy Techniques2024

    • Author(s)
      Mohamed Ibrahim, Jacques Bodiguel, Marie-Christine Averlant-Petit, Koichi Matsuo
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] Monitoring the Self-Assembly of Alginate Hydrogel Using Synchrotron Radiation Circular Dichroism2024

    • Author(s)
      Tatsuki Haga, Masaya Yoshida, Takeharu Haino, Koichi Matsuo, Mohamed I.A. Ibrahim
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] VUVCD Measurements of dried proteins and its application to protein-membrane interaction stud2024

    • Author(s)
      Kosuke Hayashi, Ryota Imaura , Koichi Matsuo
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] Optical Activity Measurement of Circularly Polarized Lyman-α Light Irradiated and Magnetic Field Applied Amino-acid Films2024

    • Author(s)
      Jun-ichi Takahashi, Masahiro Kobayashi, Gen Fujimori, Hiroshi Ota, Koichi Matsuo, Yoshitaka Taira, Masahiro Katoh, Kensei Kobayashi,Yoko Kebukawa, Hiroaki Nakamura
    • Organizer
      The 28th Hiroshima International Symposium on Synchrotron Radiation
    • Int'l Joint Research
  • [Presentation] Dissociation-association dynamics of multiple helical polysaccharides: Xanthan in aqueous NaCl2023

    • Author(s)
      K. Terao, Y. Tomofuji, K. Matsuo
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Dynamic observation of the membrane interaction process of β-lactoglobulin by time-resolved vacuum-ultraviolet circular dichroism2023

    • Author(s)
      S. Hashimoto, K. Matsuo
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Secondary structural analysis of Histone H2A-H2B proteins extracted from heated cells2023

    • Author(s)
      Y. Izumi, K. Matsuo, A. Yokoya
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Structural investigations of cargo molecules inside icosahedrally symmetric encapsulin by VUVCD spectroscopic measurements2023

    • Author(s)
      S. Kumamoto, A. Yamamoto, Y. Shiratsuchi, K. Matsuo, A. Higashiura, D. Hira
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Secondary structure of bacterial DNA gyrase inhibitor by vacuum-ultraviolet circular dichroism spectroscopy2023

    • Author(s)
      F. Kato, K. Matsuo
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Secondary structure changes in FUS-LC causing liquid-liquid phase separation2023

    • Author(s)
      F. Kentaro, M. Nobuo, K. Matsuo, M. Kato
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Mechanism between the antimicrobial peptide Magainin2 and lipid membrane revealed by synchrotron radiation circular- and linear- dichroism spectroscopy2023

    • Author(s)
      R. Tsuji, M. Kumashiro, R. Imaura, S. Tanaka, K. Matsuo
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Salt effect on the interaction between α-synuclein and membrane revealed by vacuum-ultraviolet circular dichroism, linear- dichroism and molecular dynamics simulation2023

    • Author(s)
      R. Imaura, Y. Kawata, K. Matsuo
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Toward a versatile method for determination of absolute configuration of chiral allenes using vacuum ultraviolet circular dichroism2023

    • Author(s)
      M. Fukumoto, K. Igawa, K. Matsuo, T. Umezawa, K. Tomooka, T. Nehira
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Quantum chemical calculations of circular dichroism in metal complexes coordinated by chiral organic molecules2023

    • Author(s)
      J-I Takahashi, M. Kobayashi, G. Fujimori, K. Kobayashi, H. Ota, Y. Taira, M. Katoh, K. Matsuo, Y. Kebukawa, H. Nakamura
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Studying the conformation changes in sol-gel of polysaccharides by circular dichroism2023

    • Author(s)
      T. Haga, K. Matsuo, M.I.A. Ibrahim
    • Organizer
      19th International Conference on Chiroptical Spectroscopy (CD2023)
    • Int'l Joint Research
  • [Presentation] Synchrotron Radiation Chiral Spectroscopy and Biomolecules2023

    • Author(s)
      Koichi Matsuo
    • Organizer
      7th Asia-Pacific Conference on Plasma Physics
    • Int'l Joint Research / Invited
  • [Remarks] Biomaterials Science Group

    • URL

      https://home.hiroshima-u.ac.jp/~d234478/HP_BL12/index.html

  • [Funded Workshop] 19th International Conference on Chiroptical Spectroscopy (CD2023)2023

URL: 

Published: 2024-12-25  

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