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2013 Fiscal Year Final Research Report

Application of meso-scale modelling for soft materials

Research Project

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Project/Area Number 23244087
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics/Chemical physics
Research InstitutionKyoto University

Principal Investigator

YAMAMOTO Ryoichi  京都大学, 工学(系)研究科(研究院), 教授 (10263401)

Co-Investigator(Kenkyū-buntansha) TANIGUCHI Takashi  京都大学, 大学院工学研究科, 准教授 (60293669)
Project Period (FY) 2011-04-01 – 2014-03-31
Keywords計算科学 / 計算物理学 / 化学物理 / 統計力学 / 高分子構造・物性
Research Abstract

We developed a unique numerical method for direct numerical simulations of dense dispersions of colloidal particles. This method, which we named the smoothed profile (SP) method, enables us to compute the time evolutions of colloidal particles, ions, and host fluids simultaneously by solving Newton-Euler, advection-diffusion, and Navier-Stokes equations so that the electro- hydrodynamic couplings can be fully taken into account. We have applied the SP method successfully for simulating the dynamics of various problems of particle dispersions, including dispersed particles in compressible fluids, 2) dispersions of self-propelled particles (squirmer), and 3) dispersions of non-sperical rigid particles (arbitanary shape by assembling multiple spheres. One can download the software used in the present studies from KAPSEL home page [http://www-tph.cheme.kyoto-u.ac.jp/kapsel/].

  • Research Products

    (36 results)

All 2014 2013 2012 2011 Other

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (15 results) (of which Invited: 15 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Diffusion of colloidal particles in swimming suspensions2014

    • Author(s)
      John J. Molina and Ryoichi Yamamoto
    • Journal Title

      Molecular Physics

      Volume: 112 Pages: 1389-1397

    • DOI

      10.1080/00268976.2014.903004

    • Peer Reviewed
  • [Journal Article] Direct numerical simulations of rigid body dispersions. I. Mobility/Friction tensors of assemblies of spheres2013

    • Author(s)
      John J. Molina and Ryoichi Yamamoto
    • Journal Title

      J. Chem. Phys

      Volume: 139 Pages: 234105

    • DOI

      10.1063/1.4844115

    • Peer Reviewed
  • [Journal Article] Sedimentation of non-Brownian spheres at high volume fraction2013

    • Author(s)
      Adnan Hamid, John J. Molina, and Ryoichi Yamamoto
    • Journal Title

      Soft Matter

      Volume: 9 Pages: 10056-10068

    • DOI

      10.1039/c3sm50748c

    • Peer Reviewed
  • [Journal Article] Velocity relaxation of a particle in a confined compressible fluid2013

    • Author(s)
      Rei Tatsumi and Ryoichi Yamamoto
    • Journal Title

      J. Chem. Phys

      Volume: 138 Pages: 184905

    • DOI

      10.1063/1.4804186

    • Peer Reviewed
  • [Journal Article] Hydrodynamic interactions of self-propelled swimmers2013

    • Author(s)
      John J. Molina, Yasuya Nakayama, and Ryoichi Yamamoto
    • Journal Title

      Soft Matter

      Volume: 9 Pages: 4923-4936

    • DOI

      10.1063/1.4804186

    • Peer Reviewed
  • [Journal Article] Propagation of hydrodynamic interactions between particles in a compressible fluid2013

    • Author(s)
      Rei Tatsumi and Ryoichi Yamamoto
    • Journal Title

      Phys. Fluids

      Volume: 25 Pages: 046101

    • DOI

      10.1063/1.4802038

    • Peer Reviewed
  • [Journal Article] General constitutive model for supercooled liquids : Anomalous transverse wave propagation2013

    • Author(s)
      Hideyuki Mizuno and Ryoichi Yamamoto
    • Journal Title

      Phys. Rev. Lett

      Volume: 110 Pages: 095901

    • DOI

      10.1103/PhysRevLett.110.095901

    • Peer Reviewed
  • [Journal Article] Direct numerical simulations of anisotropic diffusion of spherical particles in sedimentation2013

    • Author(s)
      Adnan Hamid and Ryoichi Yamamoto
    • Journal Title

      Phys. Rev. E

      Volume: 87 Pages: 022310

    • DOI

      10.1103/PhysRevE.87.022310

    • Peer Reviewed
  • [Journal Article] Sedimentation at Finite Peclet Number : Direct Numerical Simulation2013

    • Author(s)
      Adnan Hamid and Ryoichi Yamamoto
    • Journal Title

      AIP Conf. Proc

      Volume: 1518 Pages: 444-447

    • DOI

      10.1063/1.4794612

    • Peer Reviewed
  • [Journal Article] Anisotropic velocity fluctuations and particle diffusion in sedimentation2013

    • Author(s)
      Adnan Hamid and Ryoichi Yamamoto
    • Journal Title

      J. Phys. Soc. Jpn

      Volume: 82 Pages: 024004

    • DOI

      10.7566/JPSJ.82.024004

    • Peer Reviewed
  • [Journal Article] Effect of hydrodynamic interactions on rapid Brownian coagulation of colloidal dispersions2012

    • Author(s)
      Yuki Matsuoka, Tomonori Fukasawa, Ko Higashitani, and Ryoichi Yamamoto
    • Journal Title

      Phys. Rev. E

      Volume: 86 Pages: 051403

    • DOI

      10.1103/PhysRevE.86.051403

    • Peer Reviewed
  • [Journal Article] Acoustic wave propagation through a supercooled liquid : A normal mode analysis2012

    • Author(s)
      Yuki Matsuoka, Hideyuki Mizuno, and Ryoichi Yamamoto
    • Journal Title

      J. Phys. Soc. Jpn

      Volume: 81 Pages: 124602

    • DOI

      10.1143/JPSJ.81.124602

    • Peer Reviewed
  • [Journal Article] Direct numerical simulation of dispersed particles in a compressible fluid2012

    • Author(s)
      Rei Tatsumi and Ryoichi Yamamoto
    • Journal Title

      Phys. Rev. E

      Volume: 85 Pages: 066704

    • DOI

      10.1103/PhysRevE.85.066704

    • Peer Reviewed
  • [Journal Article] Mechanical Responses and Stress Fluctuations of a Strongly Sheared Supercooled Liquid2012

    • Author(s)
      Hideyuki Mizuno and Ryoichi Yamamoto
    • Journal Title

      Eur. Phys. J. E

      Volume: 35 Pages: 29

    • DOI

      10.1140/epje/i2012-12029-6

    • Peer Reviewed
  • [Journal Article] Dynamical heterogeneity in a highly supercooled liquid under a sheared situation2012

    • Author(s)
      Hideyuki Mizuno and Ryoichi Yamamoto
    • Journal Title

      J. Chem. Phys

      Volume: 136 Pages: 084505

    • DOI

      10.1063/1.3688227

    • Peer Reviewed
  • [Journal Article] Re-entrant transition in the shear viscosity of dilute rigid rod dispersions2011

    • Author(s)
      Hideki Kobayashi and Ryoichi Yamamoto
    • Journal Title

      Phys. Rev. E

      Volume: 84 Pages: 051404

    • DOI

      10.1103/PhysRevE.84.051404

    • Peer Reviewed
  • [Journal Article] Dynamical heterogeneity in a highly supercooled liquid : Its correlation length, intensity, and lifetime2011

    • Author(s)
      Hideyuki Mizuno and Ryoichi Yamamoto
    • Journal Title

      Phys. Rev. E

      Volume: 84 Pages: 011506

    • DOI

      10.1103/PhysRevE.84.011506

    • Peer Reviewed
  • [Journal Article] Simulation studies of microstructure of colloids in sedimentation

    • Author(s)
      Adnan Hamid, John J. Molina, and Ryoichi Yamamoto
    • Journal Title

      Molecular Simulation

      Volume: (accepted)

    • Peer Reviewed
  • [Presentation] Acoustic vs. Viscous Momentum Transports between Colloidal Particles2014

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      The AIMR International Symposium 2014 (AMIS 2014)
    • Place of Presentation
      Sendai, Japan
    • Year and Date
      20140217-19
    • Invited
  • [Presentation] コロイド・微粒子分散系*の直接数値計算2014

    • Author(s)
      山本量一
    • Organizer
      高分子学会ポリマーフロンティア21
    • Year and Date
      2014-03-14
    • Invited
  • [Presentation] Smoothed Profile Method for DNS of Particle Dispersions2013

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      3rd International Conference on Molecular Simulation (ICMS-2013)
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      20131118-20
    • Invited
  • [Presentation] Acoustic momentum transport in colloidal dispersions2013

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      International Soft Matter Conference 2013
    • Place of Presentation
      Roma, Italy
    • Year and Date
      20130915-19
    • Invited
  • [Presentation] ソフトマターの計算科学2013

    • Author(s)
      山本量一
    • Organizer
      第62回高分子討論会
    • Place of Presentation
      金沢市
    • Year and Date
      20130911-13
    • Invited
  • [Presentation] Simulations of colloids and self-propelled particles with fully resolved hydrodynamics2013

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      Physics of Complex Colloids (COMPLOID-2013)
    • Place of Presentation
      Ljubljana, Slovenia
    • Year and Date
      20130515-18
    • Invited
  • [Presentation] Modeling and applications of particle-hydrodynamics hybrid method for self-propelled particles2013

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      John von Neumann Institute for Computing (NIC) workshop "Hybrid particle-continuum methods in computational materials physics"
    • Place of Presentation
      Juelich, Germany
    • Year and Date
      20130304-07
    • Invited
  • [Presentation] コロイド粒子~自己推進微生物の粗視化モデリング2013

    • Author(s)
      山本量一
    • Organizer
      日本機械学会関西支部第14回秋期技術交流フォーラム
    • Place of Presentation
      吹田市
    • Year and Date
      2013-10-26
    • Invited
  • [Presentation] コロイド・微粒子分散系の直接数値計算 : SPM/KAPSEL の概要2013

    • Author(s)
      山本量一
    • Organizer
      新化学技術推進協会
    • Place of Presentation
      東京都
    • Year and Date
      2013-04-05
    • Invited
  • [Presentation] Simulations of Colloids and Self-propelled Particles with Fully Resolved Hydrodynamics2012

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      Workshop on the Open Problems of the Glass Transition and Related Topics
    • Place of Presentation
      Fukuoka, Japan
    • Year and Date
      20121216-20
    • Invited
  • [Presentation] Computational Science for Soft Materials2012

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      The 1st Kyoto and Saudi Arabian Universities Workshop
    • Place of Presentation
      Kyoto, Japan
    • Year and Date
      20121107-08
    • Invited
  • [Presentation] Multiscale simulations of polymeric flow2012

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      Conference on Computational Physics (CCP2012)
    • Place of Presentation
      Kobe, Japan
    • Year and Date
      20121014-18
    • Invited
  • [Presentation] Simulations of self-propelled particles with fully resolved hydrodynamics2012

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      Lorentz Center international workshop on "Modelling the dynamics of complex molecular systems"
    • Place of Presentation
      Leiden, The Netherlands
    • Year and Date
      20120813-0907
    • Invited
  • [Presentation] A general constitutive model for supercooled liquids : mechanical response to 3-dimentional flow2012

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      WPI-AIMR Workshop "Structure and Dynamics of Glass -Bridging mathematics and material science-"
    • Place of Presentation
      Sendai, Japan
    • Year and Date
      20120627-29
    • Invited
  • [Presentation] Multiscale Simulations for Polymeric Flow : Particle-CFD Coupling Model2012

    • Author(s)
      Ryoichi Yamamoto
    • Organizer
      KITP conference on "Modeling soft matter : linking multiple length and time scales"
    • Place of Presentation
      Santa Barbara, USA
    • Year and Date
      20120604-08
    • Invited
  • [Book] "Chapter 8 : Computer Simulations of Charged Colloids : 1. Mesoscopic Modeling" in Electrical Phenomena at Interfaces and Biointerfaces : Fundamentals and Applications in Nano-, Bio-, and Environmental Sciences2012

    • Author(s)
      Yasuya Nakayama, Kang Kim, and Ryoichi Yamamoto, Wiley
    • Total Pages
      14
  • [Book] "Chapter 9 : Computer Simulations of Charged Colloids : 1. Mesoscopic Modeling" in Electrical Phenomena at Interfaces and Biointerfaces : Fundamentals and Applications in Nano-, Bio-, and Environmental Sciences2012

    • Author(s)
      Kang Kim, Yasuya Nakayama, and Ryoichi Yamamoto, Wiley
    • Total Pages
      11
  • [Remarks] KAPSEL HomePage

    • URL

      http://www-tph.cheme.kyoto-u.ac.jp/kapsel/

URL: 

Published: 2015-06-25  

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