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2013 Fiscal Year Final Research Report

Development on the integrated system of quantum multi component molecular theories and its application to protonics and positronics

Research Project

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Project/Area Number 23350010
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Physical chemistry
Research InstitutionYokohama City University

Principal Investigator

TACHIKAWA Masanori  横浜市立大学, 生命ナノシステム科学研究科, 教授 (00267410)

Co-Investigator(Kenkyū-buntansha) KITA Yukiumi  横浜市立大学, 生命ナノシステム科学研究科, 助教 (40453047)
SHIGA Motoyuki  日本原子力研究開発機構, システム計算科学センター, 研究員 (40370407)
NAGASSHIMA Umpei  独立行政法人産業技術総合研究所, ナノシステム研究部門, 総括研究主幹 (90164417)
Project Period (FY) 2011-04-01 – 2014-03-31
Keywords量子多成分系分子理論 / プロトニクス / ポジトロニクス / 量子モンテカルロ法 / 経路積分シミュレーション
Research Abstract

Recently, we have developed some first-principles approaches for multi-component systems including both electrons and nuclei (or positron) quantum-mechanically: Quantum multi-component molecular orbital, density functional theory, quantum Monte Carlo, and ab initio path integral methods. In this project, (1) we have developed the integrated system of quantum multi component molecular theories, that is, (i) development on the theories for more accurate and much larger systems and (ii) implementation for efficient parallel computing. Then, (2) we have applied (i) protonics and (ii) positronics systems.

  • Research Products

    (55 results)

All 2014 2013 2012 2011 Other

All Journal Article (54 results) Remarks (1 results)

  • [Journal Article] Multi-component molecular orbital study on positron attachment to alkali-metal hydride molecules : nature of chemical bonding and dissociation limits in [LiH; e+]2014

    • Author(s)
      T. Oyamada and M. Tachikawa
    • Journal Title

      Eur. Phys. J. D

      Volume: (in press)

  • [Journal Article] Electron-nucleus correlation functional for multicomponent density-functional theory2014

    • Author(s)
      T. Udagawa, T. Tsuneda, and M. Tachikawa
    • Journal Title

      Phys. Rev. A

      Volume: (in press)

  • [Journal Article] Development of multicomponent hybrid density functional theory with polarizable continuum model for the analysis of nuclear quantum effect and solvent effect on NMR chemical shift2014

    • Author(s)
      Y. Kanematsu and M. Tachikawa
    • Journal Title

      J. Chem. Phys

      Volume: (in press)

  • [Journal Article] Accurate prediction of hyperfine coupling constants in muoniated and hydrogenated ethyl radicals : ab initio path integral simulation study with density functional theory method2014

    • Author(s)
      K. Yamada, Y. Kawashima, and M. Tachikawa
    • Journal Title

      J. Chem. Theor. Comput

      Volume: (in press)

  • [Journal Article] Theoretical investigation of the binding of a positron to vibrational excited states of hydrogen cyanide molecule2014

    • Author(s)
      Y. Kita and M. Tachikawa
    • Journal Title

      Eur. Phys. J. D

      Volume: (in press)

  • [Journal Article] Quantum Monte Carlo and high-level ab initio molecular orbital investigation of dissociation channels of the positronic alkali-metal hydrides, [XH;e+] (X = Li, Na, and K)2014

    • Author(s)
      Y. Yamada, Y. Kita, M. Tachikawa, M. Towler, and R. J. Needs
    • Journal Title

      Eur. Phys. J. D

      Volume: (in press)

  • [Journal Article] Theoretical investigation of a positron binding to aspartame molecule using the ab initio multi-component molecular orbital approach2014

    • Author(s)
      Y. Oba and M. Tachikawa
    • Journal Title

      Int. J. Quant. Chem

      Volume: (in press)

  • [Journal Article] An Ab Initio Path Integral Molecular Dynamics Study of the Nuclear Quantum Effect on Out-of-plane Ring Deformation of Hydrogen Maleate Anion2014

    • Author(s)
      Y. Kawashima and M. Tachikawa
    • Journal Title

      J. Chem. Theor. Comput

      Volume: (in press)

  • [Journal Article] Molecular dynamics and principal components analysis for a self-assembled nanocube in aqueous solution2014

    • Author(s)
      T. Mashiko, K. Yamada, T. Kojima, S. Hiraoka, U. Nagashima, and M. Tachikawa
    • Journal Title

      Chem. Lett

      Volume: (in press)

  • [Journal Article] Why is N...Be distance of NH3H+...DBeH shorter than that of NH3D+...HBeH? Paradoxical geometrical isotope effects for partially isotope-substituted dihydrogen-bonded isotopomers2014

    • Author(s)
      T. Udagawa and M. Tachikawa
    • Journal Title

      J. Comput. Chem

      Volume: 35 Pages: 271-274

  • [Journal Article] Geometric isotope effects on small chloride ion water clusters with path integral molecular dynamics simulations2013

    • Author(s)
      Q. Wang, K. Suzuki, U. Nagashima, M. Tachikawa, and S. Yan
    • Journal Title

      Chem. Phys

      Volume: 426 Pages: 38-47

  • [Journal Article] Nuclear quantum effect on protonated Lysine with asymmetric low barrier hydrogen bond : ab initio path integral molecular dynamics study2013

    • Author(s)
      Y. Ogata, M. Daido, Y. Kawashima, and M. Tachikawa
    • Journal Title

      RSC Advances

      Volume: 3 Pages: 25252-25257

  • [Journal Article] Positron-attachment to nonpolar or small dipole CXY (X, Y = O, S, and Se) molecules : Vibrational enhancement of positron affinities with configuration interaction level of multi-component molecular orbital approach2013

    • Author(s)
      K. Koyanagi, Y. Takeda, T. Oyamada, Y. Kita, and M. Tachikawa
    • Journal Title

      Phys. Chem. Chem. Phys

      Volume: 15 Pages: 16208-16213

  • [Journal Article] Binding of a Positron to Nucleic Base Molecules and Their Pairs2013

    • Author(s)
      K. Koyanagi, Y. Kita, Y. Shigeta, and M. Tachikawa
    • Journal Title

      ChemPhysChem (Communication)

      Volume: 14 Pages: 3458-3462

  • [Journal Article] Nuclear quantum effect and temperature dependency on the hydrogen-bonded structure of base pairs2013

    • Author(s)
      M. Daido, Y. Kawashima, and M. Tachikawa
    • Journal Title

      J. Comput. Chem

      Volume: 34 Pages: 2403-2411

  • [Journal Article] Ab initio path integral simulations for the fluoride ion-water clusters : Competitive nuclear quantum effect between F--water and water-water hydrogen bonds2013

    • Author(s)
      Y. Kawashima, K. Suzuki, and M. Tachikawa
    • Journal Title

      J. Phys. Chem. A

      Volume: 117 Pages: 5205-5210

  • [Journal Article] Muon-electron hyperfine coupling constants of muoniated ethyl radical : a path integral simulations with semi-empirical molecular orbital study2013

    • Author(s)
      K. Yamada, Y. Kawashima, and M. Tachikawa
    • Journal Title

      Chin. J. Phys

      Volume: (in press)

  • [Journal Article] Theoretical study of substituent effect on the electronic excited states of chromophore in cyan fluorescent proteins2013

    • Author(s)
      M. Takahashi, J. Koseki, Y. Kita, Y. Kawashima, and M. Tachikawa
    • Journal Title

      Chin. J. Phys

      Volume: (in press)

  • [Journal Article] Theoretical Study of H/D Isotope Effects on Nuclear Magnetic Shieldings Using an ab initio Multi-Component Molecular Orbital Method2013

    • Author(s)
      T. Udagawa, T. Ishimoto, and M. Tachikawa
    • Journal Title

      Molecules

      Volume: 18 Pages: 5209-5220

  • [Journal Article] Temperature dependence on the structure of Zundel cation and its isotopomers2013

    • Author(s)
      K. Suzuki, M. Tachikawa, and M. Shiga
    • Journal Title

      J. Chem. Phys

      Volume: 138 Pages: 184307 (7)

  • [Journal Article] Nuclear quantum effect on intramolecular hydrogen bond of hydrogen maleate anion : An ab initio path integral molecular dynamics study2013

    • Author(s)
      Y. Kawashima and M. Tachikawa
    • Journal Title

      Chem. Phys. Lett

      Volume: 571 Pages: 23-27

  • [Journal Article] Quantum chemical investigation of the Doppler broadening of positron annihilation radiation spectra in polymers2013

    • Author(s)
      K. Koyanagi, Y. Kita, K. Sato, Y. Kobayashi, and M. Tachikawa
    • Journal Title

      Chin. J. Phys

      Volume: (in press)

  • [Journal Article] Path integral molecular dynamic study of nuclear quantum effect on small chloride water clusters of Cl-(H2O)1-42013

    • Author(s)
      Q. Wang, K. Suzuki, U. Nagashima, M. Tachikawa, and S. Yan
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 229-236

  • [Journal Article] Theoretical analysis of phase transition temperature of hydrogen-bonded dielectric materials induced by H/D isotope effect2013

    • Author(s)
      T. Ishimoto and M. Tachikawa
    • Journal Title

      Progress in Theoretical Chemistry and Physics

      Volume: B27 Pages: 303-329

  • [Journal Article] Quantum fluctuation and vibrational dynamics of aqueous Cu+ and Ag+ clusters2013

    • Author(s)
      A. Koizumi, M. Tachikawa, and M. Shiga
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 44-49

  • [Journal Article] Semiempirical investigations on the stabilization energies and ionic hydrogen-bonded structures of F-(H2O)n and Cl-(H2O)n (n=1-4) clusters2013

    • Author(s)
      Q. Wang, K. Suzuki, U. Nagashima, M. Tachikawa, and S. Yan
    • Journal Title

      J. Theoret. Appl. Phys

      Volume: (in press)

  • [Journal Article] Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with muti-component density functional theory2013

    • Author(s)
      Y. Kita, H. Kamikubo, M. Kataoka, and M. Tachikawa
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 50-53

  • [Journal Article] Gold-standard coupled-cluster study of the ground-state chromium dimer cation2013

    • Author(s)
      Y. Yamada, K. Hongo, K. Egashira, Y. Kita, U. Nagashima, and M. Tachikawa
    • Journal Title

      Chem. Phys. Lett

      Volume: 555 Pages: 84-86

  • [Journal Article] Theoretical Study on the Phase Transition and the H/D Isotope Effect of Squaric Acid2012

    • Author(s)
      T. Ishimoto and M. Tachikawa
    • Journal Title

      Ferroics and Multiferroics (Periodical of Solid State Phenomena)

      Volume: 189 Pages: 169-177

  • [Journal Article] Theoretical Study on Isotope Effect for Phase Transition Temperature of Mixed K3H1-xDx(SO4)2, Mixed (H1-xDx)2SQ, Tritiated TKHS, and T2SQ Crystals2012

    • Author(s)
      T. Ishimoto and M. Tachikawa
    • Journal Title

      Ferroelectrics

      Volume: 433 Pages: 170-179

  • [Journal Article] Ab initio path integral molecular dynamics simulations of F2H- and F2H3+2012

    • Author(s)
      K. Suzuki,H. Ishibashi, K. Yagi, M. Shiga, and M. Tachikawa
    • Journal Title

      Progress in Theoretical Chemistry and Physics

      Volume: B26 Pages: 207-216

  • [Journal Article] Temperature dependence of self-assembled molecular capsules consisting of gear-shaped amphiphile molecules with molecular dynamics simulations2012

    • Author(s)
      J. Koseki, Y. Kita, S. Hiraoka, U. Nagashima, and M. Tachikawa
    • Journal Title

      Int. J. Quant. Chem

      Volume: 113 Pages: 397-400

  • [Journal Article] Vibrational enhancement of positron affinities for nonpolar carbon dioxide and carbon disulfide molecules : Multi- component molecular orbital study for vibrational excited states2012

    • Author(s)
      K. Koyanagi, Y. Kita, and M. Tachikawa
    • Journal Title

      Int. J. Quant. Chem

      Volume: 113 Pages: 382-385

  • [Journal Article] Theoretical analysis of correlation between ionization threshold fluence in IR-MALDI and IR absorption spectrum of matrix molecules2012

    • Author(s)
      M. Hatakeyama, T. Mashiko, H. Hazama, K. Awazu, and M. Tachikawa
    • Journal Title

      Int. J. Quant. Chem

      Volume: 113 Pages: 125-129

  • [Journal Article] Bound states of positron with simple carbonyl and aldehyde species with configuration interaction multi-component molecular orbital and local vibrational approaches2012

    • Author(s)
      M. Tachikawa, Y. Kita, and R. J. Buenker
    • Journal Title

      New J. Phys

      Volume: 14 Pages: 035004 (10)

  • [Journal Article] Systematic theoretical investigation of positron-binding to amino acid molecules with ab initio multi-component molecular orbital approach2012

    • Author(s)
      K. Koyanagi, Y. Kita, and M. Tachikawa
    • Journal Title

      Eur. Phys. J. D

      Volume: 66 Pages: 121 (7)

  • [Journal Article] Quantum tautomerization in porphycene and its isotopomers : Path-integral molecular dynamics simulations2012

    • Author(s)
      T. Yoshikawa, S. Sugawara, T. Takayanagi, M. Shiga, and M. Tachikawa
    • Journal Title

      Chem. Phys

      Volume: 394 Pages: 46-51

  • [Journal Article] Analytical optimization of orbital exponents in Gaussian-type functions for molecular systems based on MCSCF and MP2 levels of fully variational molecular orbital method2011

    • Author(s)
      N. Shimizu, T. Ishimoto, and M. Tachikawa
    • Journal Title

      Theor. Chem. Acc

      Volume: 130 Pages: 679-685

  • [Journal Article] Role of CH-pi interaction energy in self-assembled gear-shaped amphiphile molecules : Correlated ab initio molecular orbital and density functional theory study2011

    • Author(s)
      J. Koseki, Y. Kita, S. Hiraoka, U. Nagashima, and M. Tachikawa
    • Journal Title

      Theor. Chem. Acc

      Volume: 130 Pages: 1055-1059

  • [Journal Article] Quantum Proton Transfer in Hydrated Sulfuric Acid Clusters : A Perspective from Semiempirical Path Integral Simulations2011

    • Author(s)
      S. Sugawara, T. Yoshikawa, T. Takayanagi, M. Shiga, and M. Tachikawa
    • Journal Title

      J. Phys. Chem. A

      Volume: 115 Pages: 11486 - 11494

  • [Journal Article] Isotope effect of proton and deuteron adsorption site on Zeolite-Templated carbon using path integral molecular dynamics2011

    • Author(s)
      K. Suzuki, M. Tachikawa, H. Ogawa, S. Ittisanronnachai, H. Nishihara, T. Kyotani, and U. Nagashima
    • Journal Title

      Theor. Chem. Acc

      Volume: 130 Pages: 1039-1042

  • [Journal Article] Nuclear quantum effect on the hydrogen-bonded structure of guanine-cytosine pair2011

    • Author(s)
      M. Daido, A. Koizumi, M. Shiga, and M. Tachikawa
    • Journal Title

      Theor. Chem. Acc

      Volume: 130 Pages: 385-391

  • [Journal Article] Ab initio quantum Monte Carlo study of the binding of a positron to alkali-metal hydrides2011

    • Author(s)
      Y. Kita, R. Maezono, M. Tachikawa, M. Towler, and R. J. Needs
    • Journal Title

      J. Chem. Phys

      Volume: 135 Pages: 054108 (5)

  • [Journal Article] Ab initio path integral simulation of AgOH(H2O)2011

    • Author(s)
      A. Koizumi, K. Suzuki, M. Shiga, and M. Tachikawa
    • Journal Title

      Int. J. Quant. Chem

      Volume: 112 Pages: 136-139

  • [Journal Article] Theoretical study of the reversible photoconversion mechanism in Dronpa2011

    • Author(s)
      J. Koseki, Y. Kita, U. Nagashima, and M. Tachikawa
    • Journal Title

      Procedia Comput. Sci

      Volume: 4 Pages: 251-260

  • [Journal Article] Molecular dynamics simulation for irreversible feature of green fluorescent protein before and after photoactivation2011

    • Author(s)
      J. Koseki, Y. Kita, and M. Tachikawa
    • Journal Title

      Chem. Lett

      Volume: 40 Pages: 476-477

  • [Journal Article] Ab initio quantum chemical study on the mechanism of exceptional behavior of lysine for ion yields in MALDI - Role of vibrational entropic contribution in thermally averaged proton affinities -2011

    • Author(s)
      M. Hatakeyama and M. Tachikawa
    • Journal Title

      J. Mass Spectrometry

      Volume: 46 Pages: 376-382

  • [Journal Article] Path integral molecular dynamics for hydrogen adsorption site of zeolite-templated carbon with semi-empirical PM3 potential2011

    • Author(s)
      K. Suzuki, M. Kayanuma, M. Tachikawa, H. Ogawa, H. Nishihara, T. Kyotani, and U. Nagashima
    • Journal Title

      Comp. Theor. Chem

      Volume: 975 Pages: 128-133

  • [Journal Article] Nuclear quantum effect on the dissociation energies of cationic hydrogen clusters2011

    • Author(s)
      M. Sugimoto, M. Shiga, and M. Tachikawa
    • Journal Title

      Comp. Theor. Chem

      Volume: 975 Pages: 31-37

  • [Journal Article] Theoretical investigations of nuclear quantum effect on molecular magnetic properties based on multi-component density functional theory2011

    • Author(s)
      Y. Kita and M. Tachikawa
    • Journal Title

      Comp. Theor. Chem

      Volume: 975 Pages: 9-12

  • [Journal Article] A concerted mechanism between protron transfer of Zundel anion and displacement of counter cation2011

    • Author(s)
      A. Koizumi, K. Suzuki, M. Shiga, and M. Tachikawa
    • Journal Title

      J. Chem. Phys. (communication)

      Volume: 134 Pages: 031101 (3)

  • [Journal Article] Theoretical study on mechanisms of structural rearrangement and ionic dissociation in the HCl(H2O)4 cluster with path-integral molecular dynamics simulations2011

    • Author(s)
      S. Sugawara, T. Yoshikawa, T. Takayanagi, and M. Tachikawa
    • Journal Title

      Chem. Phys. Lett

      Volume: 501 Pages: 238-244

  • [Journal Article] Bound states of positron with nitrile species with configuration interaction multi- component molecular orbital approach2011

    • Author(s)
      M. Tachikawa, Y. Kita, and R. J. Buenker
    • Journal Title

      Phys. Chem. Chem. Phys

      Volume: 13 Pages: 2701-2705

  • [Journal Article] Nuclear quantum effect on hydrogen adsorption site of zeolite-templated carbon model using path integral molecular dynamics2011

    • Author(s)
      K. Suzuki, M. Kayanuma, M. Tachikawa, H. Ogawa, H. Nishihara, T. Kyotani, and U. Nagashima
    • Journal Title

      J. Alloys and Compounds

      Volume: 509 Pages: 868-871

  • [Remarks]

    • URL

      http://www-user.yokohama-cu.ac.jp/~tachi/

URL: 

Published: 2015-06-25  

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