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2013 Fiscal Year Final Research Report

Elucidation of mechanisms of bilin synthesizing enzyme and photo-adaptation regulating protein

Research Project

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Project/Area Number 23370052
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

FUKUYAMA Keiichi  大阪大学, 工学(系)研究科(研究院), 教授 (80032283)

Co-Investigator(Kenkyū-buntansha) UNNO Masaki  茨城大学, 理工学研究科, 教授 (10359549)
WADA Kei  宮崎大学, テニュアトラック推進機構, 助教 (80379304)
Co-Investigator(Renkei-kenkyūsha) IKEUCHI Masahiko  東京大学, 総合文化研究科, 教授 (20159601)
SUGISHIMA Masakazu  久留米大学, 医学部, 准教授 (30379292)
Project Period (FY) 2011-04-01 – 2014-03-31
KeywordsX線結晶解析 / 中性子結晶解析 / ビリン還元酵素 / シアノバクテリオクロム / シトクロムp450還元酵素 / ヘムオキシゲナーゼ / 反応機構 / 立体構造
Research Abstract

We tried to elucidate the molecular mechanism of PcyA, an enzyme that synthesize bilin pigment, through crystal structures. These studies include analysis of PcyA mutants and neutron crystallography as well as X-ray crystallography. PcyA is characteristic in that it reduces two sites of biliverdin sequentially. When the first step is completed, PcyA switches to the second step. We defined Asp105 and other residues are involved in this reaction. We also determined the protonation state Asp105 and biliverdin, and clarified the molecular mechanisms of the reduction.
We succeeded in crystallization of the full-length cyanobacteriochrome.

  • Research Products

    (14 results)

All 2014 2013

All Journal Article (5 results) Presentation (7 results) Book (2 results)

  • [Journal Article] Crystal Structure of Bacillus subtilis γ -glutamyltranspeptidase in complex with acivicin : diversity of the binding mode of a classical and electrophilic active-site directed glutamate analogue2014

    • Author(s)
      T. Ida, H. Suzuki, K. Fukuyama, J. Hiratake, and K. Wada
    • Journal Title

      Acta Crystallogr. Section D70

      Pages: 607-614

  • [Journal Article] Structural basis for the electron transfer from an open form of NADPH-cytochrome P450 oxidoreductase to heme oxygenase2014

    • Author(s)
      M. Sugishima, H. Sato, Y. Higashimoto, J. Harada, K. Wada, K. Fukuyama, and M. Noguchi
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 111 Pages: 2524-2529

  • [Journal Article] Cysteine 295 indirectly affects Ni coordination of carbon monoxide dehydrogenase-II C-cluster2013

    • Author(s)
      T. Inoue, K. Takao, T. Yoshida, K. Wada, T. Daifuku, Y. Yoneda, K. Fukuyama, and Y. Sako
    • Journal Title

      Biochem. Biophys. Res. Commun

      Volume: 441 Pages: 13-17

  • [Journal Article] γ-グルタミルトランスペプチダーゼの立体構造と特異的反応2013

    • Author(s)
      福山恵一, 和田啓
    • Journal Title

      日本結晶学会誌55巻

      Pages: 340-344

  • [Journal Article] Glutathion-analogous peptidyl phosphorus esters as mechanism -based inhibitors of γ -glutamyl transpeptidase for probing cysteinyl-glycin binding site2013

    • Author(s)
      M. Nakajima, B. Watanabe, L. Han, B. Shimizu, K. Wada, K. Fukuyama, H. Suzuki, and J. Hiratake
    • Journal Title

      Bioorg. Med. Chem

      Volume: 22 Pages: 1176-1194

  • [Presentation] 鉄硫黄クラスター合成に伴うSufBCD複合体の会合状態変換2013

    • Author(s)
      平林佳, 長坂雄太, 佐藤喬之, 片山寿美枝, 岩崎憲治, 福山恵一, 高橋康弘, 和田啓
    • Organizer
      平成25年度日本結晶学会
    • Place of Presentation
      熊本大学, 熊本
    • Year and Date
      20131012-13
  • [Presentation] 新たなABC蛋白質ファミリーに属する鉄硫黄クラスター生合成装置の構造・機能解析2013

    • Author(s)
      平林佳, 田中尚志, 福山恵一, 高橋康弘, 和田啓
    • Organizer
      第37回蛋白質と酵素の構造と機能に関する九州シンポジウム
    • Place of Presentation
      ゆやど雲仙新湯, 長崎
    • Year and Date
      20130926-28
  • [Presentation] 鉄硫黄クラスター生合成系の中心成分IscUへの変異導入とin vivo機能解析2013

    • Author(s)
      田中尚志, 和田啓, 福山恵一, 高橋康弘
    • Organizer
      第86回日本生化学会
    • Place of Presentation
      パシフィコ横浜, 神奈川
    • Year and Date
      20130911-13
  • [Presentation] 鉄硫黄クラスター合成装置のダイナミックな構造変化2013

    • Author(s)
      平林佳, 長坂雄太, 佐藤喬之, 片山寿美枝, 岩崎憲治, 福山恵一, 高橋康弘, 和田啓
    • Organizer
      第86回日本生化学会
    • Place of Presentation
      パシフィコ横浜, 神奈川
    • Year and Date
      20130911-13
  • [Presentation] Mutational analysis of IsnU revealed novel functional residues2013

    • Author(s)
      N. Tanaka, T. Masako, K. Wada, K. Fukuyama, and Y. Takahashi
    • Organizer
      International Conference on Iron-Cluster Biogenesis and Regulation 2013
    • Place of Presentation
      Univ. of South Carolina, Columbia, USA
    • Year and Date
      20130520-23
  • [Presentation] Structural basis of protein interaction manners in the plant-type [2Fe-2S] ferredoxin2013

    • Author(s)
      K. Hirabayashi, H. Kameda, Y. Takahashi, K. Fukuyama, and K. Wada
    • Organizer
      International Conference on Iron-Sulfur Cluster Biogenesis and Regulation 2013
    • Place of Presentation
      Univ. of South Carolina, Columbia, USA
    • Year and Date
      20130520-23
  • [Presentation] X-ray crystallographic analysis of a non-canonical cysteine desulfurase from the hyperthermophile2013

    • Author(s)
      K. Hirabayashi, T. Iwanaga, M. Yamakawa, N. Tanaka, K. Fukuyama, Y. Takahashi, and K. Wada
    • Organizer
      Aquifex aeolicus. International Conference on Iron-Cluster Biogenesis and Regulation 2013
    • Place of Presentation
      Univ. of South Carolina, Columbia, USA
    • Year and Date
      20130520-23
  • [Book] γ -Glutamyltranspeptidase and Its Precursor. Handbook of Proteolytic Enzymes, 3 rd Ed, Chapter 8202013

    • Author(s)
      J. Hiratake, H. Suzuki, K. Fukuyama, K. Wada, and H. Kumagai
    • Total Pages
      3712-3719
  • [Book] Structure function relationships of ferredoxin-dependent bilin reductases2013

    • Author(s)
      M. Unno, M. Sugishima, K. Wada, and K. Fukuyama
    • Total Pages
      21
    • Publisher
      Nova Science Publishers

URL: 

Published: 2015-06-25  

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