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2013 Fiscal Year Final Research Report

Paradigm shift in enzymatic heme degradation

Research Project

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Project/Area Number 23550186
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemistry related to living body
Research InstitutionTohoku University

Principal Investigator

MATSUI Toshitaka  東北大学, 多元物質科学研究所, 准教授 (90323120)

Project Period (FY) 2011 – 2013
Keywordsヘム代謝 / 酸素活性化 / 反応機構 / 病原性細菌 / ホルムアルデヒド
Research Abstract

In this study, we have examined novel type reactions of enzymatic heme degradation. A recent in vitro study has revealed that a canonical heme degrading enzyme, heme oxygenase (HO), produces a new heme catabolite under special reaction condition. The new catabolite was successfully detected from mammalian cell culture, suggesting that the novel HO reaction can proceed in living organisms. On the other hand, newly-found IsdG-type enzymes degraded heme into unique reaction products through distinct reaction mechanisms. The mechanistic difference from the well-studied HO reaction appears to be caused by unusual non-planarity of heme bound to the IsdG-type enzymes. These diversity shed new light on enzymatic heme degradation to stimulate biological research exploring new physiological functions as well as its mechanistic studies.

  • Research Products

    (28 results)

All 2014 2013 2012 2011

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (20 results)

  • [Journal Article] 歪みで誘起される新たなヘム分解反応2014

    • Author(s)
      松井敏高
    • Journal Title

      生物物理

      Volume: 54 Pages: 104-105

    • Peer Reviewed
  • [Journal Article] Heme degradation by Staphylococcus aureus IsdG and IsdI liberates formaldehyde rather than carbon monoxide2013

    • Author(s)
      T. Matsui, S. Nambu, Y. Ono, C. W. Goulding, K. Tsumoto, M. Ikeda-Saito
    • Journal Title

      Biochemistry

      Volume: 52 Pages: 3025-3027

    • Peer Reviewed
  • [Journal Article] A new way to degrade heme : The Mycobacteriaum tuberoculosis enzyme MhuD catalyzes heme degradation without generating CO2013

    • Author(s)
      S. Nambu, T. Matsui, M., C. W. Goulding, S. Takahashi, M. Ikeda-Saito
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Pages: 10101-10109

    • Peer Reviewed
  • [Journal Article] Crystallographic studies of heme oxygenase complexed with an unstable reaction intermediate, verdoheme2012

    • Author(s)
      M. Unno, T. Matsui, M. Ikeda-Saito
    • Journal Title

      J. Inorg. Biochem.

      Volume: 113 Pages: 102-109

    • Peer Reviewed
  • [Journal Article] A heme degradation enzyme, HutZ, from Vibrio cholerae2012

    • Author(s)
      T. Uchida, Y. Sekine, T. Matsui, M. Ikeda- Saito, K. Ishimori
    • Journal Title

      Chem. Commun.

      Volume: 48 Pages: 6741-6743

    • Peer Reviewed
  • [Journal Article] Heme regulates B-cell differentiation, antibody class switch, and heme oxygenase-1 expression in B cell as a ligand of Bach22011

    • Author(s)
      M. Watanabe-Matsui, A. Muto, T. Matsui, A. Itoh-Nakadai, O. Nakajima, K. Murayama, M. Yamamoto, M. Ikeda-Saito, K. Igarashi
    • Journal Title

      Blood

      Volume: 117 Pages: 5438-5448

    • Peer Reviewed
  • [Journal Article] 金属タンパク質のX線結晶構造解析:ヘム分解酵素の反応中間体2011

    • Author(s)
      海野昌喜,松井敏高,齋藤正男
    • Journal Title

      日本結晶学会誌

      Volume: 53 Pages: 213-218

    • Peer Reviewed
  • [Journal Article] ヘム分解における酸素活性化:活性酸素の有効利用2011

    • Author(s)
      松井敏高
    • Journal Title

      生物物理

      Volume: 51 Pages: 132-133

    • Peer Reviewed
  • [Presentation] Unique reaction mechanisms of IsdG-type heme degrading enzymes from pathogenic bacteria2013

    • Author(s)
      T. Matsui
    • Organizer
      Sixth Korea-Japan Seminars on Biomolecular Sciences : Experiments and Simulations
    • Place of Presentation
      Japan, Okazaki
    • Year and Date
      2013-11-27
  • [Presentation] Heme Degradation without Releasing CO : Unique Reaction Mechanism of IsdG-type Heme Degrading Enzymes2013

    • Author(s)
      T. Matsui, S. Nambu, Y. Ono, S. Takahashi, M. Ikeda-Saito C.W. Goulding K. Tsumoto
    • Organizer
      International Conference on BioInorganic Chemistry (ICBIC16)
    • Place of Presentation
      France, Grenoble
    • Year and Date
      2013-07-24
  • [Presentation] 歪みで誘起される新たなヘム代謝反応2013

    • Author(s)
      松井敏高
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取
    • Year and Date
      2013-06-14
  • [Presentation] 新規IsdG型ヘム分解酵素の構造と反応機構2013

    • Author(s)
      松井敏高,南部周介,小野由香莉, C. W. Goulding,高橋聡,秋山公男,齋藤正男
    • Organizer
      第13回日本蛋白質科学会年会
    • Place of Presentation
      鳥取
    • Year and Date
      2013-06-13
  • [Presentation] ヘム代謝の多様な戦略2013

    • Author(s)
      松井敏高
    • Organizer
      分子研シンポジウム
    • Place of Presentation
      岡崎
    • Year and Date
      2013-06-01
  • [Presentation] ヘム分解の多様な分子機構2013

    • Author(s)
      松井敏高
    • Organizer
      生物無機化学の新潮流と展望
    • Place of Presentation
      名古屋
    • Year and Date
      2013-05-25
  • [Presentation] Heme Degradation without Releasing CO : Unique Reaction Mechanism of IsdG-type Heme Degrading Enzymes2013

    • Author(s)
      T. Matsui, S. Nambu, Y. Ono, C. W. Goulding, S. Takahashi, K. Tsumoto, M. Ikeda-Saito
    • Organizer
      NIH-Tohoku University-JSPS International Symposium on Cutting Edge Biomedical Research
    • Place of Presentation
      Japan, Sendai
    • Year and Date
      2013-05-10
  • [Presentation] 結核菌由来ヘム分解酵素MhuDの活性中心構造と酵素活性2013

    • Author(s)
      南部周介,小野由香莉,松井敏高, C. W. Goulding,秋山公男,高橋聡,津本浩平,齋藤正男
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      草津
    • Year and Date
      2013-03-22
  • [Presentation] 黄色ブドウ球菌由来IsdGにおける特殊なヘム分解生成物2013

    • Author(s)
      小野由香莉,南部周介,松井敏高, C. W. Goulding,高橋聡,津本浩平,齋藤正男
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      草津
    • Year and Date
      2013-03-22
  • [Presentation] ヘムタンパク質におけるユニークな酸素活性化2013

    • Author(s)
      松井敏高
    • Organizer
      分子研研究会「生体配位化学の最前線と展望」
    • Place of Presentation
      岡崎
    • Year and Date
      2013-02-05
  • [Presentation] 新規IsdG型ヘム分解酵素の構造と反応機構2012

    • Author(s)
      松井敏高,草間周介, C. W. Goulding,高橋聡,秋山公男,齋藤正男
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-16
  • [Presentation] IsdG型酵素による新規ヘム分解機構2012

    • Author(s)
      草間周介,松井敏高, C. W. Goulding,高橋聡,秋山公男,齋藤正男
    • Organizer
      第45回酸化反応討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-11-16
  • [Presentation] IsdG型酵素による新規ヘム分解機構2012

    • Author(s)
      草間周介,松井敏高, C. W. Goulding,高橋聡,秋山公男,齋藤正男
    • Organizer
      第6回バイオ関連化学シンポジウム
    • Place of Presentation
      札幌
    • Year and Date
      2012-09-07
  • [Presentation] ヘム分解の新たな戦略2012

    • Author(s)
      松井敏高
    • Organizer
      第11回化学系薬学若手セミナー
    • Place of Presentation
      仙台
    • Year and Date
      2012-09-01
  • [Presentation] 結核菌由来ヘム分解酵素MhuDの活性中心構造と反応機構2012

    • Author(s)
      草間周介,松井敏高, C. W. Goulding,高橋聡,秋山公男,齋藤正男
    • Organizer
      第39回生体分子科学討論会
    • Place of Presentation
      仙台
    • Year and Date
      2012-06-09
  • [Presentation] Ring-opening mechanism of verdoheme by heme oxygenase2011

    • Author(s)
      T. Matsui, M. Ikeda-Saito
    • Organizer
      ICBIC 15
    • Place of Presentation
      Canada, Vancouver
    • Year and Date
      20110807-12
  • [Presentation] Heme oxygenase catalytic mechanism2011

    • Author(s)
      M. Ikeda-Saito, M. Unno, T. Matsui
    • Organizer
      15th International Conference on Biological Inorganic Chemistry
    • Place of Presentation
      Canada, Vancouver
    • Year and Date
      20110807-12
  • [Presentation] Heme oxygenase catalytic mechanism2011

    • Author(s)
      M. Ikeda-Saito, T. Matsui, M. Unno
    • Organizer
      International Symposium on Activation of Dioxygen and Homogeneous Catalyst
    • Place of Presentation
      Japan, Nago
    • Year and Date
      20110703-08
  • [Presentation] 結核菌由来ヘム分解酵素MhuDの活性中心構造と反応機構2011

    • Author(s)
      草間周介,松井敏高, C. W. Goulding,秋山公男,高橋聡,齋藤正男
    • Organizer
      第44回酸化反応討論会
    • Place of Presentation
      吹田
    • Year and Date
      2011-11-05
  • [Presentation] 結核菌由来ヘム分解酵素MhuDの活性中心構造と酵素活性2011

    • Author(s)
      草間周介,松井敏高, C. W. Goulding,秋山公男,高橋聡,齋藤正男
    • Organizer
      第38回生体分子科学討論会
    • Place of Presentation
      つくば
    • Year and Date
      2011-06-23

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Published: 2015-07-16  

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