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2013 Fiscal Year Final Research Report

Structure analysis and characterization of the LH1-RC complex induced by metal ions

Research Project

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Project/Area Number 23550188
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Chemistry related to living body
Research InstitutionIbaraki University

Principal Investigator

OTOMO Seiu  茨城大学, 理学部, 教授 (10213612)

Co-Investigator(Kenkyū-buntansha) MIKI Kunio  京都大学, 理学研究科, 教授 (10116105)
KIMURA Yukihiro  神戸大学, 農学研究科, 助教 (20321755)
Project Period (FY) 2011 – 2013
Keywords光合成 / 光捕集 / 反応中心 / 光電変換 / 色素膜タンパク質
Research Abstract

The crystal structure of a bacterial photosynthetic light-harvesting-reaction center core complex (LH1-RC) has been determined. The structure reveals a closed arrangement of LH1 complex around the RC, and the LH1 BChl a molecules form a partially overlapping ring with a shorter Mg-Mg spacing compared with that of B850 in LH2. Structural evidence is for first time provided for the possible ubiquinone pathway in the closed LH1 complex. The Ca2+-binding sites are identified. Molecular mechanisms of quinone transport, Ca2+-regulation and interaction between LH1 and RC are described below. The result has been published in Nature.

  • Research Products

    (12 results)

All 2014 2013 2012 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (5 results) Remarks (1 results)

  • [Journal Article] Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 Å2014

    • Author(s)
      Niwa, S., Yu, L.-J., Takeda, K., Hirano, Y., Kawakami, T., Wang-Otomo, Z.-Y. & Miki, K.
    • Journal Title

      Nature

      Volume: 508 Pages: 228-232

    • Peer Reviewed
  • [Journal Article] ATR-FTIR detection of the metal-sensitive structural changes in the light-harvesting 1 reaction center complex from the thermophilic purple sulfur bacterium Thermochromatium tepidum2013

    • Author(s)
      Li, Y., Kimura, Y., Arikawa, T., Wang-Otomo, Z.-Y. & Ohno, T.
    • Journal Title

      Biochemistry

      Volume: 52 Pages: 9001-9008

    • Peer Reviewed
  • [Journal Article] Structure analysis and characterization of the cytochrome c-554 from thermophilic green sulfur photosynthetic bacterium Chloroba- culum tepidum2013

    • Author(s)
      Yu, L.-J., Unno, M., Kimura, Y., Yanagimoto, K., Oh-Oka, H., Wang-Otomo, Z.-Y.
    • Journal Title

      Photosynth. Res.

      Volume: 118 Pages: 249-258

    • Peer Reviewed
  • [Journal Article] Structure analysis and comparative characterization of the cytochrome c'and flavocytochrome c from thermophilic purple photosynthetic bacterium Thermochromatium tepidum2012

    • Author(s)
      Hirano, Y., Kimura, Y., Suzuki, H., Miki, K. & Wang(Otomo), Z.-Y.
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 6556-6567

    • Peer Reviewed
  • [Journal Article] Metal cations modulate the bacteriochlorophyll- protein interaction in the light-harvesting 1 core complex from Thermochromatium tepidum2012

    • Author(s)
      Kimura, Y., Inada, Y., Numata, T., Arikawa, T., Li, Y., Zhang, J.-P., Wang(Otomo), Z.-Y. & Ohno, T.
    • Journal Title

      Biochim. Biophys. Acta

      Volume: 1817 Pages: 1022-1029

    • Peer Reviewed
  • [Journal Article] Gene sequencing and characterization of the light-harvesting complex 2 from thermophilic purple sulfur bacterium Thermochromatium tepidum2012

    • Author(s)
      Sekine, F., Horiguchi, K., Kashino, Y., Shimizu, Y., Yu, L.-J., Kobayashi, M. & Wang(Otomo), Z.-Y.
    • Journal Title

      Photosynth. Res.

      Volume: 111 Pages: 9-18

    • Peer Reviewed
  • [Presentation] Crystal structure of a LH1-RC core complex from Thermochromatium tepidum2013

    • Author(s)
      Z.-Y. Wang-Otomo, L.-J. Yu, S. Niwa, K. Takeda, Y. Hirano, T. Kawakami, K. Miki
    • Organizer
      16th International Congress on Photosynthesis Research(第16回国際光合成会議)
    • Place of Presentation
      St. Louis, MO, USA
    • Year and Date
      20130811-16
  • [Presentation] 好熱紅色細菌の光捕集反応中心複合体の機能解明と構造解析2013

    • Author(s)
      于龍江、竹田一旗、平野優、丹羽智美、川上知朗、大友征宇、三木邦夫
    • Organizer
      第21回光合成セミナー
    • Place of Presentation
      名工大
    • Year and Date
      20130706-07
  • [Presentation] 好熱性紅色硫黄細菌Thermochromatium tepidum由来光捕集1複合体におけるBChl-aとTrp残基間の水素結合相互作用2012

    • Author(s)
      L. Yong, Y. Kimura, T. Numata, Y. Inada, T. Arikawa, S. Otomo, T. Ohno
    • Organizer
      日本生物物理学会
    • Place of Presentation
      名大
    • Year and Date
      20120922-24
  • [Presentation] 紅色硫黄細菌由来光捕集1複合体における色素―蛋白質間相互作用の解析2012

    • Author(s)
      木村行宏、永麗、有川曜央、沼田朋子、大友征宇、大野隆
    • Organizer
      第20回光合成セミナー
    • Place of Presentation
      阪大
    • Year and Date
      2012-06-30
  • [Presentation] 紅色細菌の光捕集タンパク質のリン酸化2012

    • Author(s)
      日下部広和、清水佑記、于龍江、大友征宇
    • Organizer
      第20回光合成セミナー
    • Place of Presentation
      阪大
    • Year and Date
      2012-06-30
  • [Remarks]

    • URL

      http://biophys.sci.ibaraki.ac.jp/

URL: 

Published: 2015-07-16  

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