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2013 Fiscal Year Final Research Report

Assssing evolutionary episodes of genetic hybridization in small mammals using the population haplotype structure analysis

Research Project

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Project/Area Number 23570101
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biodiversity/Systematics
Research InstitutionHokkaido University

Principal Investigator

SUZUKI Hitoshi  北海道大学, 地球環境科学研究科(研究院), 准教授 (40179239)

Project Period (FY) 2011 – 2013
Keywords二次的接触 / ハプロタイプ構造解析 / 毛色関連遺伝子 / 系統地理 / 浸透交雑 / 小型哺乳類 / クマネズミ / クロテン
Research Abstract

In this study, we aimed to develop a new method to better understand spacial and temporal aspects for the secondary contact in which two distinct lineages of different geographic groups are mingled, focusing on recombination signals along a certain chromosome portion, such as 10 kb, 200 kb, 1 Mb, and 5 Mb. In a case of 200 kb segment, for example, we determined nucleotide sequences in eight gene region (~500 bp) being separated at 20-30 kb interval and assessed its haplotype structures. These methods allowed us to detect the secondary contact events of different time scales, such as several hundred years before present and several hundred thousand years ago. Further efforts would be needed to improve the method, aiming at establishment of ways to fully utilize the genetic information related to recombination events in molecular phylogeographic study.

  • Research Products

    (29 results)

All 2014 2013 2012 2011

All Journal Article (18 results) (of which Peer Reviewed: 18 results) Presentation (11 results) (of which Invited: 1 results)

  • [Journal Article] Effects of founding events on the coat colour polymorphism of Apodemus speciosus on the Izu Islands2014

    • Author(s)
      Tomozawa T, Nunome M, Suzuki H, Ono H
    • Journal Title

      Biological Journal of the Linnean Society

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of East and Southeast Asian fossorial moles (Lipotyphla, Talpidae)2014

    • Author(s)
      Shinohara A, Kawada S-I, Son NT, Koshimoto C, Endo H, Can DN, Suzuki H
    • Journal Title

      Journal of Mammalogy

      Volume: 95 (in press)

    • Peer Reviewed
  • [Journal Article] A distinct genetic characteristics of Sri Lankan Rattus and Bandicota (Murinae, Rodentia) inferred from mitochondrial and nuclear markers2014

    • Author(s)
      Yasuda SP, Gamage CD, Koizumi N, Nishio S, Isozumi R, Shimizu K, Koma T, Amada T, Suzuki H, Yoshimatsu K, Arikawa
    • Journal Title

      Genes & Genetic Systems

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Lack of association between winter coat colour and genetic population structure in the Japanese hare, Lepus brachyurus (Lagomorpha : Leporidae)2014

    • Author(s)
      Mitsuo Nunome, Gohta Kinoshita, Morihiko Tomozawa, Harumi Torii, Rikyu Matsuki, Fumio Yamada, Yoichi Matsuda, Hitoshi Suzuki
    • Journal Title

      Biological Journal of the Linnean Society

      Volume: 111 Pages: 461-776

    • DOI

      10.1111/bij.12245

    • Peer Reviewed
  • [Journal Article] Molecular Genetic Evidence for the place of origin of the Pacific rat, Rattus exulans2014

    • Author(s)
      Vicki Thomson, Ken P Aplin, Alan Cooper, Susan Hisheh, Hitoshi Suzuki, Ibnu Maryanto, Grace Yap, Stephen C Donnellan
    • Journal Title

      PLoS ONE 01

      Volume: 9(3) Pages: e91356

    • DOI

      10.1371/journal.pone.0091356

    • Peer Reviewed
  • [Journal Article] Mc1r変異に基づくクマネズミ外来系統の日本列島における移入と浸透交雑の把握2014

    • Author(s)
      神戸嘉一, 鈴木莊介, 矢部辰男, 中田勝士, 前園泰徳, 阿部愼太郎, 石田健, 谷川力, 橋本琢磨, 武田美加子, 土屋公幸, 吉松組子, 鈴木仁
    • Journal Title

      哺乳類科学

      Volume: 53(2) Pages: 289-299

    • DOI

      10.11238/mammalianscience.53.289

    • Peer Reviewed
  • [Journal Article] Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA2013

    • Author(s)
      Suzuki H, Nunome M, 以下13名省略
    • Journal Title

      Heredity

      Volume: 111 Pages: 375–390

    • DOI

      10.1038/hdy.2013.60

    • Peer Reviewed
  • [Journal Article] Spatial and temporal aspects of occurrence of Mogera species in the Japanese islands inferred from mitochondrial and nuclear gene sequences2013

    • Author(s)
      Kirihara T, Shinohara A, Tsuchiya K, Harada M, Kryukov AP, Suzuki H
    • Journal Title

      ZOOLOGICAL SCIENCE

      Volume: 30(4) Pages: 267-281

    • DOI

      10.2108/zsj.30.267

    • Peer Reviewed
  • [Journal Article] Evolutionary history of the sable (Martes zibellina brachyura) on Hokkaido inferred from mitochondrial Cytb and nuclear Mc1r and Tcf25 gene sequences2013

    • Author(s)
      Kotaro Ishida, Jun J. Sato, Gohta Kinoshita, Tetsuji Hosoda, Alexey P. Kryukov, Hitoshi Suzuki
    • Journal Title

      Acta Theriologica

      Volume: 58 Pages: 13-24

    • DOI

      10.1007/s13364-012-0103-z

    • Peer Reviewed
  • [Journal Article] Evolutionary and phylogeographic views on Mc1r and Asip variation in mammals2013

    • Author(s)
      Suzuki H
    • Journal Title

      Genes & Genetic Systems

      Volume: 88 Pages: 155-164

    • DOI

      10.1266/ggs.88.155

    • Peer Reviewed
  • [Journal Article] Ancient colonization and within-island vicariance revealed by mitochondrial DNA phylogeography of the mountain hare (Lepus timidus) in Hokkaido, Japan2012

    • Author(s)
      Gohta Kinoshita, Mitsuo Nunome, Sang-Hoon Han, Hirofumi Hirakawa, Hitoshi Suzuki
    • Journal Title

      ZOOLOGICAL SCIENCE

      Volume: 29 Pages: 776-785

    • DOI

      10.2108/zsj.29.776

    • Peer Reviewed
  • [Journal Article] 組換現象に着目した集団ハプロタイプ構造解析法ー分かれと出会いの系統地理学ー2012

    • Author(s)
      桑山崇, 布目三夫, 鈴木仁
    • Journal Title

      タクサ

      Volume: 32(ISSN 13422367) Pages: 7-12

    • Peer Reviewed
  • [Journal Article] Comparative phylogeography of two crow species : jungle crow Corvus macrorhynchos and carrion crow Corvus corone2012

    • Author(s)
      Alexey Kryukov, Liudmila Spiridonova, Sumio Nakamura, Elisabeth Haring, Hitoshi Suzuki
    • Journal Title

      ZOOLOGICAL SCIENCE

      Volume: 29(8) Pages: 484-492

    • DOI

      10.2108/zsj.29.484

    • Peer Reviewed
  • [Journal Article] Evolutionary and biogeographic history of weasel-like carnivorans (Musteloidea)2012

    • Author(s)
      Jun J Sato, Mieczyslaw Wolsan, Francisco J Prevosti, Guillermo D'Elía, Colleen Begg, Keith Begg, Tetsuji Hosoda, Kevin L Campbell, Hitoshi Suzuki
    • Journal Title

      Molecular Phylogenetics and Evolution

      Volume: 63 Pages: 745-757

    • DOI

      10.1016/j.ympev.2012.02.025

    • Peer Reviewed
  • [Journal Article] Spatial framework of nine distinct local populations of the Japanese dormouse Glirulus japonicus based on matrilineal cytochrome b and patrilineal SRY gene sequences2012

    • Author(s)
      Shumpei P Yasuda, Manami Iwabuchi, Haruka Aiba, Shusaku Minato, Kunihiro Mitsuishi, Kimiyuki Tsuchiya, Hitoshi Suzuki
    • Journal Title

      ZOOLOGICAL SCIENCE

      Volume: 29(2) Pages: 111-120

    • DOI

      10.2108/zsj.29.111

    • Peer Reviewed
  • [Journal Article] Genetic characterization of Okinawan black rats showing coat color polymorphisms of white spotting and melanism2012

    • Author(s)
      Kambe Y, Nakata K, Yasuda SP, Suzuki H
    • Journal Title

      Genes & Genetic Systems

      Volume: 87(1) Pages: 29-38

    • DOI

      10.1266/ggs.87.29

    • Peer Reviewed
  • [Journal Article] Origin of agouti-melanistic polymorphism in Wild Black Rats (Rattus rattus) inferred from Mc1r gene sequences2011

    • Author(s)
      Yoshikazu Kambe, Tsutomu Tanikawa, Yasuharu Matsumoto, Morihiko Tomozawa, Ken P Aplin, Hitoshi Suzuki
    • Journal Title

      ZOOLOGICAL SCIENCE

      Volume: 28(8) Pages: 560-567

    • DOI

      10.2108/zsj.28.560

    • Peer Reviewed
  • [Journal Article] Phylogenetic history of mustelid fauna in Taiwan inferred from mitochondrial genetic loci2011

    • Author(s)
      T. Hosoda, J.J. Sato, L.-K. Lin, Y.-J. Chen, M. Harada, H. Suzuki
    • Journal Title

      Canadian Journal of Zoology

      Volume: 89(6) Pages: 559-569

    • DOI

      10.1139/z11-029

    • Peer Reviewed
  • [Presentation] ヒトが関わるハツカネズミの東アジアにおける分散2013

    • Author(s)
      鈴木仁
    • Organizer
      日本変異原学会第85回大会 望月喜多司記念シンポジウム変異と進化を考える:我々はどこから来たのか、どこへ行くのか
    • Place of Presentation
      岡山コンベンションセンター(岡山市)
    • Year and Date
      2013-11-29
    • Invited
  • [Presentation] Asip遺伝子の変異に基づく沖縄産クマネズミの系統地理学的位置づけ2013

    • Author(s)
      笹森翔一, 中田勝士, 鈴木仁
    • Organizer
      第29回日本霊長類学会・日本哺乳類学会2013年度合同大会
    • Place of Presentation
      岡山理科大学(岡山市)
    • Year and Date
      2013-09-06
  • [Presentation] クマネズミ類における環境適応に関連する遺伝子の進化的動態2013

    • Author(s)
      高梨脩, 土屋公幸, Ken Aplin, 鈴木仁
    • Organizer
      第29回日本霊長類学会・日本哺乳類学会2013年度合同大会
    • Place of Presentation
      岡山理科大学(岡山市)
    • Year and Date
      2013-09-06
  • [Presentation] ミャンマー産ネズミ亜科4種の分子系統学的把握2013

    • Author(s)
      鈴木仁, Saw Bown, 片倉賢
    • Organizer
      第29回日本霊長類学会・日本哺乳類学会2013年度合同大会
    • Place of Presentation
      岡山理科大学(岡山市)
    • Year and Date
      2013-09-06
  • [Presentation] Origin of coat color variation in the black rats in the Japanese Islands2012

    • Author(s)
      Hitoshi Suzuki, Shoichi Sasamori, Daisuke Nomi, Katsushi Nakata
    • Organizer
      Second International Sympogium on East Asian Vertebrate Species
    • Place of Presentation
      京都大学(京都市)
    • Year and Date
      2012-09-28
  • [Presentation] 小笠原諸島弟島産クマネズミの毛色とMc1r遺伝子の変異2012

    • Author(s)
      鈴木仁, 笹森翔一, 桐原崇, 橋本琢磨
    • Organizer
      日本哺乳類学会2012年度大会
    • Place of Presentation
      麻布大学(相模原市)
    • Year and Date
      2012-09-21
  • [Presentation] 沖縄産全身黒色性クマネズミにおけるAgouti Signaling Protein遺伝子(Asip)変異の解析2012

    • Author(s)
      笹森翔一, 中田勝士, 鈴木仁
    • Organizer
      第83回日本動物学会
    • Place of Presentation
      大阪大学(大阪市)
    • Year and Date
      2012-09-13
  • [Presentation] 北海道産クロテン(Martes zibellina brachyura)の毛色多型に関する責任遺伝子の解析2012

    • Author(s)
      小川耕平,細田徹治,佐藤淳,木下豪太,安生浩太,鈴木仁
    • Organizer
      第83回日本動物学会
    • Place of Presentation
      大阪大学(大阪市)
    • Year and Date
      2012-09-13
  • [Presentation] ニホンテン紀伊集団における毛色関連遺伝子ASIPの遺伝的分化2011

    • Author(s)
      安生浩太, 佐藤淳, 細田徹治, 木下豪太, 鈴木仁
    • Organizer
      第82回日本動物学会
    • Place of Presentation
      大雪アリーナ(旭川市)
    • Year and Date
      2011-09-22
  • [Presentation] 機能遺伝子周辺ハプロタイプ構造解析法による浸透交雑と自然選択の検出2011

    • Author(s)
      鈴木仁
    • Organizer
      第82回日本動物学会
    • Place of Presentation
      大雪アリーナ(旭川市)
    • Year and Date
      2011-09-21
  • [Presentation] 沖縄島北部地域で捕獲された全身黒色型クマネズミの系統学的背景2011

    • Author(s)
      鈴木仁, 乃美大祐, 神戸嘉一, 安田俊平, 中田勝士
    • Organizer
      日本哺乳類学会2011年度大会
    • Place of Presentation
      宮崎観光ホテル(宮崎)
    • Year and Date
      2011-09-09

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Published: 2015-07-16  

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