• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2013 Fiscal Year Final Research Report

Molecular mechanisms and evolutionary origin of the robustness in vertebrate development

Research Project

  • PDF
Project/Area Number 23570256
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Developmental biology
Research InstitutionNagahama Institute of Bio-Science and Technology (2013)
Nara Institute of Science and Technology (2011-2012)

Principal Investigator

OGINO HAJIME  長浜バイオ大学, バイオサイエンス学部, 教授 (10273856)

Co-Investigator(Renkei-kenkyūsha) OCHI Haruki  山形大学, 医学部教育研究支援センター, 助教 (00505787)
Project Period (FY) 2011 – 2013
Keywords発生・分化 / 進化 / ゲノム / 発現制御 / 遺伝子
Research Abstract

In this study, we attempted to reveal molecular mechanisms that confer robustness to vertebrate development, and its evolutionary origin, by studying the regulation of paralogs generated by ancient whole genome duplications. In case of Nr2f-paralogs, we found that Nr2f1, Nr2f2, Nr2f5 and Nr2f6, show partially overlapping expression in the eye and brain, and three pairs of enhancers generated by the genome duplication are still conserved between Nr2f1 and Nr2f2. Regarding Pax2 and Pax5 paralogs, an ancestral-type sequence of their expression-compensation enhancers was identified in the cephalochordate amphioxus.

  • Research Products

    (24 results)

All 2014 2013 2012 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (14 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Loss of cell-extracellular matrix interaction triggers retinal regeneration accompanied by Rax and Pax6 activation2013

    • Author(s)
      Nabeshima A, Nishibayashi C, Ueda Y, Ogino H, Araki M
    • Journal Title

      Genesis

      Volume: 51 Pages: 410-419

    • DOI

      10.1002/dvg.22378

    • Peer Reviewed
  • [Journal Article] Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues2012

    • Author(s)
      Ochi H, Tamai T, Nagano H, Kawaguchi A, Sudou N, and Ogino H
    • Journal Title

      Nature Commun

      Volume: 3 Pages: 848

    • DOI

      10.1038/ncomms1851

    • Peer Reviewed
  • [Journal Article] Comparative expression analysis of the H3K27 demethylases JMJD3 and UTX with the H3K27 methylase EZH2 in Xenopus2012

    • Author(s)
      Kawaguchi A, Ochi H, Sudou N, and Ogino H
    • Journal Title

      Int J Dev Biol

      Volume: 56 Pages: 295-300

    • DOI

      10.1387/ijdb.113360ak

    • Peer Reviewed
  • [Journal Article] Transcription factors involved in lens development from the preplacodal ectoderm2012

    • Author(s)
      Ogino H, Ochi H, Reza H M, and Yasuda k
    • Journal Title

      Dev Biol

      Volume: 363 Pages: 333-347

    • DOI

      10.1016/j.ydbio.2012.01.006

    • Peer Reviewed
  • [Journal Article] Different requirement for Wnt/!-catenin signaling in limb regeneration of larval and adult Xenopus2011

    • Author(s)
      Yokoyama, Y, Maruoka T, Ochi H, Aruga A, Ohgo S, Ogino H, and Tamura K
    • Journal Title

      PLoS ONE

      Volume: 6

    • DOI

      10.1371/journal.pone.0021721

    • Peer Reviewed
  • [Journal Article] Essential roles of epithelial bone morphogenetic protein signaling during prostatic development

    • Author(s)
      Omori A, Miyagawa S, Ogino Y, Harada M, Ishii K, Sugimura Y, Ogino H, Nakagata N, and Yamada G
    • Journal Title

      Endocrinology

      Volume: (in press)

    • DOI

      10.1210/en.2013-2054

    • Peer Reviewed
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues2014

    • Author(s)
      Ogino H
    • Organizer
      International symposium:Frontiers in Amphibian biology:Endangered species conservation and genome editing
    • Place of Presentation
      東広島市広島大学
    • Year and Date
      2014-03-27
  • [Presentation] Six2とLhx1の腎幹細胞での発現を調節するシス配列の探索2013

    • Author(s)
      佐々木裕子
    • Organizer
      第7回日本ツメガエル研究集会
    • Place of Presentation
      山口県美祢市
    • Year and Date
      2013-09-24
  • [Presentation] パラログ形成に伴うシス調節配列の進化2013

    • Author(s)
      荻野肇
    • Organizer
      国立遺伝学研究所研究集会「新機能獲得の分子進化」
    • Place of Presentation
      三島市
    • Year and Date
      2013-08-17
  • [Presentation] パラログ形成に伴うシス調節配列の進化2013

    • Author(s)
      荻野肇
    • Organizer
      第3回Tokyo Vertebrate Morphology Meeting
    • Place of Presentation
      東京都慈恵医科大学
    • Year and Date
      2013-08-10
  • [Presentation] Role of Six1 in evolution of vertebrate primary sensory system2013

    • Author(s)
      Kawakami K
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江市
    • Year and Date
      2013-05-29
  • [Presentation] The cis-regulatory evolution for developmental robustness and stress response2013

    • Author(s)
      Ochi H
    • Organizer
      第46回日本発生生物学会大会
    • Place of Presentation
      松江市
    • Year and Date
      2013-05-29
  • [Presentation] 組織特異的なサイレンサーの獲得によるパラログの発現パターンの多様化2012

    • Author(s)
      荻野肇
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡市
    • Year and Date
      2012-12-11
  • [Presentation] ゲノム倍化が引き起こす遺伝子発現調節機構の進化2012

    • Author(s)
      荻野肇
    • Organizer
      第24回高遠・分子細胞生物学シンポジウム
    • Place of Presentation
      長野県伊那市
    • Year and Date
      2012-08-23
  • [Presentation] パラログ形成にともなうシス調節機構の進化2012

    • Author(s)
      越智陽城
    • Organizer
      日本進化学会14回大会
    • Place of Presentation
      東京都八王子市
    • Year and Date
      2012-08-23
  • [Presentation] Evolution of a tissue-specific silencer underlies divergence in the expression of paralogues2012

    • Author(s)
      Ogino H
    • Organizer
      第45回日本発生生物学会・第64回日本細胞生物学会合同大会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2012-05-31
  • [Presentation] Paralogous enhancers:a crossover point between developmental robustness and stress response2012

    • Author(s)
      Ochi H
    • Organizer
      第45回日本発生生物学会・第64回日本細胞生物学会合同大会
    • Place of Presentation
      兵庫県神戸市
    • Year and Date
      2012-05-29
  • [Presentation] Conservation and diversification of cis-regulatory mechanisms of the pax2/5/8 paralog group in chordates2011

    • Author(s)
      Ochi H
    • Organizer
      American Society for Cell Biology Annual Meeting
    • Place of Presentation
      Denver Colorado USA
    • Year and Date
      2011-12-04
  • [Presentation] Scarless wound healing of Xenopus laevis -as a prerequisite for epimorphic regeneration2011

    • Author(s)
      Yokoyama H
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Year and Date
      2011-05-19
  • [Presentation] A H3K27 demethylase Jmjd3, is essential for Xenopus eye development2011

    • Author(s)
      Kawaguchi A
    • Organizer
      日本発生生物学会第44回大会
    • Place of Presentation
      沖縄県宜野湾市
    • Year and Date
      2011-05-18
  • [Book] New Principles in Developmental Processes, Springer2014

    • Author(s)
      Ochi, H, Kawaguchi A, and Ogino, H
    • Total Pages
      279-290
    • Publisher
      Differential use of paralogous genes via evolution of cis-regulatory elements for divergent expression specificities
  • [Book] Methods in Molecular Biology, Xenopus Protocols, 2nd edition:Post-Genomic Approaches, Humana press2012

    • Author(s)
      Ogino H, Ochi H, Uchiyama C, Louie S, and Grainger R M
    • Total Pages
      245-263
    • Publisher
      Comparative genomics-based identification and analysis of cis-regulatory elements
  • [Remarks] 長浜バイオ大学教員の紹介(荻野 肇)

    • URL

      http://www.nagahama-i-bio.ac.jp/guide/kyoin/detail/post-10.html

  • [Remarks] 報道関連情報 雑誌論文③(Nature Communications誌に発表したゲノム倍化と遺伝子進化の研究) の意義を伝えた記事

    • URL

      http://sankei.jp.msn.com/west/west_life/news/120525/wlf12052516310018-n1.htm

URL: 

Published: 2015-07-16  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi