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2012 Fiscal Year Final Research Report

Synthetic approaches to investigate artificial living systems by RNA self-replicating ribozymes

Research Project

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Project/Area Number 23651203
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionKyoto University

Principal Investigator

SAITO Hirohide  京都大学, 白眉センター, 准教授 (20423014)

Co-Investigator(Kenkyū-buntansha) NOMURA Shin-ichiro  東北大学, 工学(系)研究科(研究員院), 准教授 (50372446)
Project Period (FY) 2011 – 2012
KeywordsRNA / 人工細胞モデル / 生命の起源
Research Abstract

One of the main goals in science is to solve the problem of origin of life: How evolvable living systems have emerged from chemical molecules such as nucleic acids? RNA can function both as an informational molecule and as a catalyst in living organisms. This duality is the premise of the RNA world hypothesis in the origin of life theory. Specially, it is believed that RNA ribozyme that facilitates self-replicating reaction is one of the most essential molecules in primitive life. To verify whether RNA has the potential for self-replication, we constructed a new RNA self-assembling ribozyme that could have conducted an evolvable RNA self-replication reaction. The artificially designed, in vitro selected ligase ribozyme was employed as a prototype for a self-assembling ribozyme. We propose that our system implies the significance of RNA tertiary motifs in the early RNA molecular evolution of the RNA world. Furthermore, we designed the synthetic RNA sequence for making higher-order membrane like structure. Giant membrane structure might be observed by using fluorescence microscopy. Their forming condition should be investigated and the result should be reported as a research article. These results may provide a possible RNA world in which both replicator and the compartment could be made by RNA. This concept might provide an alternative way to investigate the problem of the origin of life.

  • Research Products

    (12 results)

All 2013 2011 Other

All Journal Article (7 results) (of which Peer Reviewed: 7 results) Presentation (3 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Condensation of an Additive-Free Cell Extract to Mimic the Conditions of Live Cells2013

    • Author(s)
      Kei Fujiwara, Shin-ichiro M. Nomura
    • Journal Title

      PLoS ONE

      Volume: 8(1) Pages: e54155

    • Peer Reviewed
  • [Journal Article] Self-Replication Reactions Dependent on Tertiary Interaction Motifs in an RNA Ligase Ribozyme2011

    • Author(s)
      Rei Ohmori, Hirohide Saito, Yochiya Ikawa,YoshihikoFujita,Tan Inoue
    • Journal Title

      J Mol Evol

    • Peer Reviewed
  • [Journal Article] Synthesis and in situ insertion of a site-specific fluorescently labeled membrane protein into cell-sized liposomes2011

    • Author(s)
      Takuma Ohtsuka, Satoshi Neki, Tamotsu Kanai, Kazunari Akiyoshi, Shin-ichiro M. Nomura, Takashi Ohtsuki
    • Journal Title

      Analytical Biochemistry

      Volume: 418 Pages: 97-101

    • Peer Reviewed
  • [Journal Article] Three-dimensionally designed protein-responsive RNA devices for cell signaling regulation

    • Author(s)
      Shunnichi Kashida, *Tan Inoue, and *Hirohide Saito
    • Journal Title

      Nucleic Acids Research

      Volume: 40(18) Pages: 9369-9378

    • Peer Reviewed
  • [Journal Article] Feedback Control of Protein Expression in Mammalian Cells by Tunable Synthetic Translational Inhibition

    • Author(s)
      James A. Stapleton, Kei Endo, Yoshihiko Fujita, Karin Hayashi, Masahiro Takinoue, *Hirohide Saito, and Tan Inoue
    • Journal Title

      ACS Synthetic Biology

      Volume: 1(3) Pages: 83-88

    • Peer Reviewed
  • [Journal Article] Synthetic human cell fate regulation by protein-driven RNA swiches

    • Author(s)
      Hirohide Saito, Yoshihiko Fujita, Shunnichi Kashida, Karin Hayashi, and *Tan Inoue
    • Journal Title

      Nature Communications

      Volume: 2 Pages: 160

    • Peer Reviewed
  • [Journal Article] Synthetic RNA-protein complex shaped like an equilateral triangle

    • Author(s)
      Hirohisa Ohno, Tetsuhiro Kobayashi, Rinko Kabata, Kei Endo, Takuma Iwasa, Shige Yoshimura, Kunio Takeyasu, *Tan Inoue, and *Hirohide Saito
    • Journal Title

      Nature Nanotechnology

      Volume: 6(2) Pages: 116-120

    • Peer Reviewed
  • [Presentation] Molecular robotics for artificial cell-model construction2013

    • Author(s)
      Shin-ichiro M. NOMURA, Yusuke SATO, Kei FUJIWARA, Shogo HAMADA, SatoshiMURATA
    • Organizer
      AROB18(18th Int. Sympo. on Artificial Life and Robotics)
    • Place of Presentation
      韓国 Daejeon
    • Year and Date
      2013-01-30
  • [Presentation] RNA-たんぱく質複合体を用いたナノバイオエンジニアリング2013

    • Author(s)
      齊藤 博英
    • Organizer
      精密工学会 超精密加工専門委員会 第65回研究会
    • Place of Presentation
      大阪
    • Year and Date
      2013-01-29
  • [Presentation] 分子ロボティクスにおける RNA-タンパク質 複合体の可能性2011

    • Author(s)
      齊藤博英、大野博久、井上丹
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2011-09-21
  • [Book] Synthetic RNA-Protein Nanostructures and Their Potential Applications Review: RNA Nanotechnology and Therapeutics

    • Author(s)
      ed. Guo, P.
    • Publisher
      CRC press(in press)
  • [Remarks]

    • URL

      http://www.cira.kyoto-u.ac.jp/saito/

URL: 

Published: 2014-09-25  

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