• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2012 Fiscal Year Final Research Report

Novel screening protocol for multi-SS bond proteins using SEP tags and its application to the development of a minimal Luciferase

Research Project

  • PDF
Project/Area Number 23651213
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Living organism molecular science
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

KURODA Yutaka  東京農工大学, 大学院・工学研究院, 准教授 (10312240)

Project Period (FY) 2011 – 2012
KeywordsSS結合ミスマッチ / 折り畳み / 溶解度向上タグ / 可溶化タグ / 逆相HPLC / 天然状態 / 生物発光 / SEPタグ
Research Abstract

Bioluminescent proteins are indispensable tools for bio-imaging, and controlling and manipulating their molecular properties has become an important issue in protein engineering. Here we developed a novel screening method for improving the bioluminescent properties of Gaussia luciferase (GLuc). GLuc possesses 10 cysteins forming 5 SS-bonds, which make GLuc manipulation especially difficult, because the cysteins become entangled into non-native SS-bonds when GLuc is expressed in E-coli with traditional protocols. In the present study we used SEP tags to solubilize the protein and favor the formation of native SS-bonds in E-coli, which is a handy and inexpensive expression host. Using this new technique we isolated novel GLuc variants with red-shifted luminescence. The application range of this method can be extended to other SS-bond containing proteins, and the improved GLuc will contribute to complement the register of reporter proteins.

  • Research Products

    (34 results)

All 2013 2012 2011 Other

All Journal Article (7 results) (of which Peer Reviewed: 6 results) Presentation (26 results) Remarks (1 results)

  • [Journal Article] Probing the physical determinants of thermal expansion of folded proteins2013

    • Author(s)
      Dellarole M, Kobayashi K, Rouget JB, Caro A, Roche J, Islam MM,Garcia-Moreno BE, Kuroda Y, Royer CA
    • Journal Title

      J Phys Chem B

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Extraction of recombinantprotein from E.coli by using a novel cell autolysis activity of VanX2013

    • Author(s)
      Kamioka T, Sohya S, Wu N, Maki T, Matsuda T, Ikegami T, Nakamura H, Kuroda Y
    • Journal Title

      Analytical Biochemistry

      Volume: (in press)

    • DOI

      doi:10.1016/j.ab.2013.04.007

    • Peer Reviewed
  • [Journal Article] High resolution crystal structure of dengue-3 envelope protein domain III suggests possible molecular mechanisms for serospecific antibody recognition2013

    • Author(s)
      Elahi M, Islam M M, Noguchi K, Yohda M, Kuroda Y
    • Journal Title

      Proteins

      Volume: 81(6) Pages: 1090-1095

    • DOI

      DOI:10.1002/prot.24237

    • Peer Reviewed
  • [Journal Article] Experimental identification and theoretical analysis of a thermallystabilized green fluorescent protein variant2012

    • Author(s)
      Akiyama S, Suenaga A, Kobayashi T, Kamioka T, Taiji M, Kuroda Y
    • Journal Title

      Biochemistry

      Volume: 51(40) Pages: 7974-7982

    • DOI

      doi:10.1021/bi300580j

    • Peer Reviewed
  • [Journal Article] Analysis of amino acid contributions to protein solubility using short peptide tags fused to a simplified BPTI variant2012

    • Author(s)
      Islam M M, Khan M M A, Kuroda Y
    • Journal Title

      BBA Proteins and Proteomics

      Volume: 1824(10) Pages: 1144-1150

    • DOI

      DOI:10.1016/j.bbapap.2012.06.005

    • Peer Reviewed
  • [Journal Article] Solubilization and folding of a fully active recombinant Gaussialuciferase with native disulfide bonds by using a SEP-tag2011

    • Author(s)
      Rathnayaka T, Tawa M, Nakamura T, Sohya S, Kuwajima K, Yohda M, Kuroda Y
    • Journal Title

      BBA Proteins and Proteomics

      Volume: 1814(12) Pages: 1775-1778

    • DOI

      DOI:10.1016/j.bbapap.2011.09.001

    • Peer Reviewed
  • [Journal Article] VanXの溶菌活性の解明と菌体内生産物の精製工程の簡略化2011

    • Author(s)
      黒田裕、上岡哲矢、惣谷志保里
    • Journal Title

      未来材料

      Volume: 11(7) Pages: 32-36

  • [Presentation] ガウシアルシフェラーゼのスクリーニングによる改変2013

    • Author(s)
      Wu Nan,上岡哲矢,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
  • [Presentation] 黒田裕,多数ペプチド系の全原子分子動力学シミュレーションを用いた凝集の解析2013

    • Author(s)
      佐藤雄士,末永敦,秋山沙織
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
  • [Presentation] サポートベクターマシン(SVM)を用いたヘリカルリンカー領域の予測2013

    • Author(s)
      鈴木涼祐,蝦名鉄平,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
  • [Presentation] システインを含むタグ配列と溶解性向上タグ配列の挿入によるGLucリフォールディングへの影響2013

    • Author(s)
      鈴木郁也,今井清博,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2013-03-04
  • [Presentation] VanXの溶菌活性を用いたルシフェラーゼのス クリーニングの簡略化2012

    • Author(s)
      Wu Nan, Tetsuya Kamioka, Shihori Sohya, Tomoki Matsuda, Takahisa Ikegami, Haruki Nakamura, Yutaka Kuroda
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Year and Date
      20120922-24
  • [Presentation] 単純化BPTI に融合したペプ チド系タグ配列を用いたアミノ酸溶解性の測定2012

    • Author(s)
      Yutaka Kuroda, Alam, M. Khan, Mohammad, M. Islam
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Year and Date
      20120922-24
  • [Presentation] 独立してフォールドする構造ドメインデータベースの構築2012

    • Author(s)
      Yuki Umezawa, Teppei Ebina, Yutaka Kuroda
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大学・東山キャンパス(愛知県)
    • Year and Date
      20120922-24
  • [Presentation] Effects of short solubility controlling peptide tags on protein's solubility, thermodynamics, structure and function2012

    • Author(s)
      Mohammad M Islam, Yutaka Kuroda
    • Organizer
      Conference of the Bangladesh Society for Biochemistry and Molecular Biology
    • Place of Presentation
      University of Rajshahi(Rajshahi, Bangladesh)
    • Year and Date
      20120225-26
  • [Presentation] Biophysical Analysis of Protein Aggregation Kinetics Based on a Monomer-Oligomer Model2012

    • Author(s)
      Yutaka Kuroda, Alam M. Khan, Monirul M Islam
    • Organizer
      新学術領域研 究「揺らぎと生体機能」第6回公開シンポジウム
    • Place of Presentation
      京都テルサ(京都府)
    • Year and Date
      2012-12-05
  • [Presentation] カン・A・モンシュール,イスラム・M・モニール,単純化BPTIとペプチド系タグを用いたアミノ酸溶解性の時間的変化・揺らぎの解析2012

    • Author(s)
      黒田裕
    • Organizer
      新学術領域「揺らぎと生体機能」「水和とATP」合同公開シンポジウム
    • Place of Presentation
      大阪ガーデンパレス(大阪府)(招待講演)
    • Year and Date
      2012-09-14
  • [Presentation] カンMモハメド,イスラムMモハマド,単純化BPTIタンパク質に融合した短いペプチド系タグを用いたアミノ酸溶解性の解析2012

    • Author(s)
      黒田裕
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2012-06-22
  • [Presentation] Two serotypes of dengue viruses show specific local structural difference in their crystal structures of envelope protein domain III(ED3)2012

    • Author(s)
      Montasir Elahi, M. Monirul Islam, Keiichi Noguchi, Masafumi Yohda,Yutaka Kuroda
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2012-06-21
  • [Presentation] VanXの大腸菌溶菌活性を利用した新規スクリーニング技術の開発2012

    • Author(s)
      Wu Nan,上岡哲矢,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
  • [Presentation] 構造ドメインデータベースの作成およびそのWeb提供2012

    • Author(s)
      梅澤祐貴,蝦名鉄平,黒田裕
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
  • [Presentation] Masafumi Yohda, Yutaka Kuroda, High resolution Crystal structure of Dengue 3 envelope protein domain III (ED3)2012

    • Author(s)
      Montasir Elahi, Mohammad M Islam, Keiichi Noguchi
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
  • [Presentation] Contribution of individual amino acids to proteinsolubility using amino acid tag2012

    • Author(s)
      Mohammed M. A. Khan, Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      生物物理関東地区研究会
    • Place of Presentation
      東京農工大学工学部(東京都)
    • Year and Date
      2012-03-05
  • [Presentation] Host Guest Analysis of Amino Acids contribution to Protein Solubility Using Short SET-Tags Fused to aSimplified BPTI2012

    • Author(s)
      Mohammad M. Islam, Yutaka Kuroda
    • Organizer
      揺らぎが機能を決める生命分子の科学第5回公開シンポジウム
    • Place of Presentation
      東大寺文化センター(奈良県)(招待講演)
    • Year and Date
      2012-01-07
  • [Presentation] VanXの大腸菌溶菌機構を利用した新規スクリーニング法の開発2011

    • Author(s)
      Wu Nan,上岡哲矢,惣谷志保里,黒田裕
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      20111214-15
  • [Presentation] Crystal structure of Dengue 3 envelope protein domain III2011

    • Author(s)
      Montasir Elahi,Mohammad Monirul Islam, Keiichi Noguchi, Masafumi Yohda , Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-14
  • [Presentation] Catherine A. Royer, Understanding protein native expansivity by mutants affecting cavities, surface and order2011

    • Author(s)
      Jean-Baptiste Rouget, Mariano Dellarole, Kei Kobayashi, Julien Roche, Yutaka Kuroda
    • Organizer
      6^th International Meeting on Biomolecules under Pressure (IMBP2011)
    • Place of Presentation
      大津市市民会館(滋賀県)
    • Year and Date
      2011-12-13
  • [Presentation] Contribution of individual amino acidto protein solubility using amino acid tag2011

    • Author(s)
      Mohammed Monsur Alam Khan , Mohammad Monirul Islam , Yutaka Kuroda
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県)
    • Year and Date
      2011-12-13
  • [Presentation] 難結晶化タンパク質変異体に対するヘテロシーディング法2011

    • Author(s)
      小林慶,Mohammad Islam,野口恵一,養王田正文,黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
  • [Presentation] ヘリックスを含むドメイン境界配列の解析及びその予測2011

    • Author(s)
      辻良太郎,蝦名鉄平,黒田裕
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
  • [Presentation] Amino Acids Contribution to Polypeptides Solubility Analyzed Using Short Poly-Amino Acid Tags2011

    • Author(s)
      Yutaka Kuroda, Atsushi Kato, Mohammad Islam
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
  • [Presentation] Effects of short solubility controlling peptide tags on protein solubility, thermodynamics, structure and function2011

    • Author(s)
      Mohammad M Islam, Atsushi Kato, Shihori Sohya, Mohammed Khan,Keiichi Noguchi, Masafumi Yohda, Shun-ichi Kidokoro, Yutaka Kuroda
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      阪急エキスポパーク(大阪府)
    • Year and Date
      2011-06-07
  • [Presentation] 蛋白質異常凝集の原理と制御2011

    • Author(s)
      黒田裕,八木寿梓,長谷川一浩,青島貞人,佐崎元
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      阪大吹田キャンパス(大阪府)(招待講演)
    • Year and Date
      2011-04-27
  • [Remarks]

    • URL

      http://www.tuat.ac.jp/~ykuroda

URL: 

Published: 2014-09-25  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi