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2012 Fiscal Year Final Research Report

Protein crystallization at the porous medium

Research Project

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Project/Area Number 23657104
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

MATSUMURA Hiroyoshi  大阪大学, 大学院・工学研究科, 准教授 (30324809)

Project Period (FY) 2011 – 2012
Keywords多孔体 / 界面 / たんぱく質 / 結晶化
Research Abstract

We investigate the nucleation rate of protein crystals at the interface of solution and porous medium (agarose gel). It was found that 2 ul agarose gel at concentrations of 2.0% (w/v) promoted the number of protein crystals. We also developed a new dispensing system for preparation of the crystallization plates. This technique combined with solution stirring technique improved the crystal quality of a protein complex, thereby solving the crystal structure. The combination with laser irradiation technique demonstrated increase in the nucleation rate. Thus, we propose that a crystallization method using semi-solid agarose is powerful for the screening of crystallization conditions.

  • Research Products

    (19 results)

All 2013 2012 Other

All Journal Article (13 results) Presentation (5 results) Patent(Industrial Property Rights) (1 results) (of which Overseas: 1 results)

  • [Journal Article] 転写制御因子 Tup1-N 末端ドメインのX線結晶構造とその複合体形成メカニズム2013

    • Author(s)
      中村太一、松村浩由、井上豪、日下菜花、田中直子、向由起夫
    • Journal Title

      日本結晶学会誌

      Volume: 55 Pages: 110-115

  • [Journal Article] Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate2012

    • Author(s)
      H. Matsumura, E. Mizohata, H. Ishida, A. Kogami, T. Ueno, A. Makino, T. Inoue, A. Yokota, T. Mae, and Y. Kai
    • Journal Title

      J. Mol. Biol

      Volume: 422(1) Pages: 75-86

  • [Journal Article] Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications2012

    • Author(s)
      H. Matsumura, N. Kusaka, T. Nakamura, N. Tanaka, K. Sagegami, K. Uegaki, T. Inoue, and Y. Mukai
    • Journal Title

      J. Biol. Chem

      Volume: 287(32) Pages: 26528-26538

  • [Journal Article] Crystal structure of the superfamily 1 virus helicase domain from tomato mosaic virus2012

    • Author(s)
      M. Nishikiori, S. Sugiyama, H. Xiang, M. Niiyama, K. Ishibashi, S. Nakamura, T. Inoue, M. Ishikawa, H. Matsumura, and E. Katoh
    • Journal Title

      J. Virol

      Volume: 86(14) Pages: 7565-7576

  • [Journal Article] Growth of protein crystals in hydrogels prevents osmotic shocks2012

    • Author(s)
      S. Sugiyama, M. Maruyama, G. Sazaki, M. Hirose, H. Adachi, K. Takano, S. Murakami, T. Inoue, Y. Mori, and H. Matsumura
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134(13) Pages: 5786-5789

  • [Journal Article] Three-dimensional non-invasive, cross-sectional imaging of protein crystals2012

    • Author(s)
      N. Nishizawa, S. Ishida, M. Hirose, S. Sugiyama, T. Inoue, Y. Mori, K. Itoh, and H. Matsumura
    • Journal Title

      Biomed. Opt. Express

      Volume: 3(4) Pages: 735-740

  • [Journal Article] Spatially precise, soft microseeding of single protein crystals by femtosecond laser ablation2012

    • Author(s)
      H. Yoshikawa, Y. Hosokawa, R. Murai, G. Sazaki, T. Kitatani, H. Adachi, T. Inoue, H. Matsumura, K. Takano, S. Murakami, Y.Mori, and H. Masuhara
    • Journal Title

      Cryst. Growth Des

      Volume: 12(9) Pages: 4334-4339

  • [Journal Article] Effects of a forced solution flow on the step advancement on {110} faces of tetragonal lysozyme crystals: direct visualization of individual steps under a forced solution flow2012

    • Author(s)
      M. Maruyama, H. Kawahara, G. Sazaki, S. Maki, Y. Takahashi, H. Y. Yoshikawa, S. Sugiyama, H. Adachi, K. Takano, H. Matsumura, T. Inoue, S. Murakami, and Y. Mori
    • Journal Title

      Cryst. Growth Des

      Volume: 12(6) Pages: 2856-2863

  • [Journal Article] The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase2012

    • Author(s)
      Y. Takashima, E. Mizohata, S. R. Krungkrai, Y. Fukunishi, T. Kinoshita, T. Sakata, H. Matsumura, J. Krungkrai, T. Horii, and T. Inoue
    • Journal Title

      J. Biochem

      Volume: 152(2) Pages: 133-138

  • [Journal Article] Human hematopoietic prostaglandin D synthase inhibitor complex structures2012

    • Author(s)
      Y. Kado, Y. Okano, N. Okazaki, K. Aritake, N. Uodome, H. Matsumura, Y. Urade, and T. Inoue
    • Journal Title

      J. Biochem

      Volume: 151(4) Pages: 447-455

  • [Journal Article] 固相ハイドロゲル中でのタンパク質結晶化2012

    • Author(s)
      杉山 成、松村浩由、丸山美帆子、佐崎 元、廣瀬未果、安達宏昭、高野和文、村上 聡、井上 豪、森 勇介
    • Journal Title

      日本結晶学会誌

      Volume: 54 Pages: 300-303

  • [Journal Article] 一枚の写真 超高分解能光断層計測を活用し,タンパク質結晶の3次元・非破壊断層イメージングに成功2012

    • Author(s)
      西澤典彦、石田周太郎、松村浩由、廣瀬未果、杉山成、森勇介、井上豪、伊東一良
    • Journal Title

      O plus E、アドコム・メディア

      Pages: 575-576

  • [Journal Article] 天然変性タンパク質による光合成調節の新規分子メカニズム

    • Author(s)
      松村浩由、田茂井政宏、重岡成
    • Journal Title

      化学と生物

      Volume: 50(11) Pages: 786-788

  • [Presentation] 超高分解能光断層計測によるタンパク質結晶の無侵襲観察技術2013

    • Author(s)
      松村浩由、石田周太郎、廣瀬未果、杉山成、井上豪、森勇介、伊東一良、西澤典彦
    • Organizer
      日本農芸化学会大会
    • Place of Presentation
      東北大学,仙台
    • Year and Date
      20130324-28
  • [Presentation] カルビン回路酵素 RuBisCO とGAPDH の活性調節機構の解明2013

    • Author(s)
      松村浩由、溝端栄一、木津奈都子、石田宏幸、田茂井政宏、前忠彦、横田明穂、甲斐泰、和田野晃、牧野周、重岡成、井上豪
    • Organizer
      日本植物生理学会大会
    • Place of Presentation
      岡山
    • Year and Date
      20130321-23
  • [Presentation] 超高分解能 OCT によるタンパク質結晶の三次元イメージング2012

    • Author(s)
      西澤典彦、石田周太郎、廣瀬未果、杉山成、井上豪、森勇介、伊東一良、松村浩由
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      仙台
    • Year and Date
      20121025-26
  • [Presentation] ウイルススーパーファミリー1 ヘリカーゼ様ドメインの結晶構造解析2012

    • Author(s)
      錦織雅樹、杉山成、相宏宇、新山真由美、石橋和大、石川雅之、松村浩由、加藤悦子
    • Organizer
      日本蛋白質科学会大会
    • Place of Presentation
      名古屋
    • Year and Date
      20120620-22
  • [Presentation] Non-invasive, three-dimensional, cross-sectional imaging of protein crystals grown in gel2012

    • Author(s)
      Norihiko Nishizawa, Shutaro Ishida, Mika Hirose, Shigeru Sugiyama, Tsuyoshi Inoue, Yusuke Mori,Kazuyoshi Itoh, Hiroyoshi Matsumura
    • Organizer
      日本蛋白質科学会大会
    • Place of Presentation
      名古屋
    • Year and Date
      20120620-22
  • [Patent(Industrial Property Rights)] METHOD FOR OBSERVING PROTEIN CRYSTAL2012

    • Inventor(s)
      西澤典彦、松村浩由、他9名
    • Industrial Property Rights Holder
      西澤典彦、松村浩由、他9名
    • Industrial Property Number
      PCT/JP2011/071332
    • Filing Date
      2012-11-22
    • Overseas

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Published: 2014-09-25  

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