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2013 Fiscal Year Final Research Report

Development of methods for controlling fluid dynamics of single molecules using gating nanopore devices

Research Project

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Project/Area Number 23681031
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Microdevices/Nanodevices
Research InstitutionOsaka University

Principal Investigator

TANIGUCHI Masateru  大阪大学, 産業科学研究所, 教授 (40362628)

Project Period (FY) 2011-04-01 – 2014-03-31
Keywordsゲーティングナノポア / ナノポア / 単分子 / 流動制御 / 生体分子 / 1分子科学 / 1分子技術
Research Abstract

The method, which is used to control the translocation speed of a single DNA and RNA molecule, is a key technology used for identifying base molecules with high accuracy and throughput. We developed surrounding gate nanopores, which consist of a gating nanopore and gate electrode. We demonstrated the calculated gate voltage dependence of the DNA translocation velocity, using theoretical simulations. In addition, in an effort to demonstrate the control method for the translocation speed using gate voltage, we fabricated a surrounding gate nanopore with a diameter of 20 nm. The translocation time was found to be 35 ms without a gate voltage. On applying a gate voltage of -0.5 V, we obtained slower translocation times of the order of approximately 350 ms, which is caused by the upward electro-osmotic flow. Thus, we demonstrated that surrounding gate nanopores can control the translocation speed of single DNA and RNA molecules using gate voltages.

  • Research Products

    (33 results)

All 2014 2013 2012 2011 Other

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (20 results) (of which Invited: 18 results) Remarks (1 results)

  • [Journal Article] graphene/hexagonal boron nitride/graphene nanopore for electrical detection of single molecules2014

    • Author(s)
      Y. He, M. Tsutsui, S. Ryuzaki, K. Yokota, M. Taniguchi, T. Kawai
    • Journal Title

      NPG Asia Materials

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Fabrications of insulator-protected nanometer-sized electrode gaps2014

    • Author(s)
      A. Arima, M. Tsutsui, T. Morikawa, K. Yokota, M. Taniguchi
    • Journal Title

      J. Appl.Phys

      Volume: 115 Pages: 114310(1-5)

    • DOI

      10.1063/1.4869135

    • Peer Reviewed
  • [Journal Article] Nonequilibrium ionic response of biased mechanically controllable break junction (MCBJ) electrodes2014

    • Author(s)
      K. Doi, M. Tsutsui, T. Ohshiro, C. -C. Chien, M. Zwolak, M. Taniguchi, T.Kawai, S. Kawano, M. Di Ventra
    • Journal Title

      J. Phys. Chem. C

      Volume: 118 Pages: 3758–3765

    • DOI

      10.1021/jp409798t

    • Peer Reviewed
  • [Journal Article] Mechanism of howsalt-gradient-induced charges affect the translocation of DNA molecules through a nanopore2013

    • Author(s)
      Y. He, M. Tsutsui, R. H. Scheicher, C. Fan, M. Taniguchi, T. Kawai
    • Journal Title

      Biophys. J

      Volume: 105 Pages: 776-782

    • DOI

      10.1016/j.bpj.2013.05.065

    • Peer Reviewed
  • [Journal Article] Trapping and identifying single-nanoparticles using a low-aspect-ratio nanopore2013

    • Author(s)
      M. Tsutsui, Y. Maeda, Y. He, S. Hongo, S. Ryuzaki, S. Kawano, T. Kawai, M. Taniguchi
    • Journal Title

      Appl. Phys. Lett

      Volume: 103 Pages: 013108(1-5)

    • DOI

      10.1063/1.4813084

    • Peer Reviewed
  • [Journal Article] Tracking single-particle dynamics via combined optical and electrical sensing2013

    • Author(s)
      N. Yukimoto, M. Tsutsui, Y. He, H. Shintaku, S. Tanaka, S. Kawano, T. Kawai, M. Taniguchi
    • Journal Title

      Sci. Rep

      Volume: 3 Pages: 1855(1-7)

    • DOI

      10.1038/srep01855

    • Peer Reviewed
  • [Journal Article] Thermophoretic manipulation of DNA translocation through nanopores2013

    • Author(s)
      Y. He, M.Tsutsui, R. H. Scheicher, F. Bai, M. Taniguchi, T. Kawai
    • Journal Title

      ACS Nano

      Volume: 7 Pages: 538-546

    • DOI

      10.1021/nn304914j

    • Peer Reviewed
  • [Journal Article] DNA capture in nanopores forgenome sequencing : challenges and opportunities2012

    • Author(s)
      Y. He, M. Tsutsui, M. Taniguchi, T. Kawai
    • Journal Title

      J. Mater. Chem

      Volume: 22 Pages: 13423-13427

    • DOI

      10.1039/c2jm31495a

    • Peer Reviewed
  • [Journal Article] Transverse electric field dragging of DNA in a nanochannel2012

    • Author(s)
      M. Tsutsui, Y. He, M. Furuhashi, S.Rahong, M. Taniguchi, T. Kawai
    • Journal Title

      Sci. Rep

      Volume: 2 Pages: 394(1-7)

    • DOI

      10.1038/srep00394

    • Peer Reviewed
  • [Journal Article] Controlling DNA translocation through gate modulation of nanopore wall surface charges2011

    • Author(s)
      Y. He, M. Tustsui, C. Fan, M. Taniguchi, T. Kawai
    • Journal Title

      ACS Nano

      Volume: 5 Pages: 5509-5518

    • DOI

      10.1021/nn201883b

    • Peer Reviewed
  • [Journal Article] Single-molecule sensing electrode embedded in-plane nanopore2011

    • Author(s)
      M. Tustsui, S. Rahong, Y. Iizumi, T.Okazaki, M. Taniguchi, T. Kawai
    • Journal Title

      Sci. Rep

      Volume: 1 Pages: 46(1-6)

    • DOI

      10.1038/srep00046

    • Peer Reviewed
  • [Journal Article] Gate manipulation of DNA capture into nanopores2011

    • Author(s)
      Y. He, M. Tustsui, C. Fan, M. Taniguchi, T. Kawai
    • Journal Title

      ACS Nano

      Volume: 5 Pages: 8391-8397

    • DOI

      10.1021/nn203186c

    • Peer Reviewed
  • [Presentation] Single molecule sequencing2014

    • Author(s)
      M. Taniguchi
    • Organizer
      Pioneer Workshop 2014 on nanopore and nanofluidics – Physics and application as Biodevices
    • Place of Presentation
      大阪大学 産業科学研究所 (大阪府茨木市)
    • Year and Date
      2014-02-07
    • Invited
  • [Presentation] Single molecule electrical sensing technologies2014

    • Author(s)
      M. Taniguchi
    • Organizer
      The 17th SANKEN International Symposium-Joined with The 2nd International Symposiumu of Nano-Micro Materials, Devices, and System Research Alliance Project
    • Place of Presentation
      大阪大学 銀杏会館 (大阪府吹田市)
    • Year and Date
      2014-01-21
    • Invited
  • [Presentation] Tunneling nanopore /nanochannel for next generation DNA2013

    • Author(s)
      M. Taniguchi
    • Organizer
      Pioneer Workshop on Nanopore
    • Place of Presentation
      Seoul National University (Seoul, SouthKorea)
    • Year and Date
      20130221-23
    • Invited
  • [Presentation] ゲーティングナノポアを用いた DNA シークエンサー2013

    • Author(s)
      谷口正輝
    • Organizer
      2013年真空・表面科学合同講演会 第33回表面科学学術講演会 第54回真空に関する連合講演会
    • Place of Presentation
      つくば国際会議場 (茨城県つくば市)
    • Year and Date
      2013-11-26
    • Invited
  • [Presentation] Single molecule electrical sequencing of DNA and microRNA2013

    • Author(s)
      谷口正輝
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2013-10-28
    • Invited
  • [Presentation] Single molecule electrical sequencing of DNA and RNA2013

    • Author(s)
      M. Taniguchi
    • Organizer
      APS March Meeting 2013
    • Place of Presentation
      Baltimore Convention Center (Maryland, USA)
    • Year and Date
      2013-03-21
    • Invited
  • [Presentation] 1分子科学を用いるバイオナノデバイス2013

    • Author(s)
      谷口正輝
    • Organizer
      東北大学通研/阪大産研 研究交流会
    • Place of Presentation
      大阪大学産業科学研究所 (大阪府茨木市)
    • Year and Date
      2013-03-15
  • [Presentation] 1分子シークエンサーの開発2013

    • Author(s)
      谷口正輝
    • Organizer
      (独)産業技術総合研究所 ナノシステム研究部門 講演会
    • Place of Presentation
      (独)産業技術総合研究所 (茨城県つくば市)
    • Year and Date
      2013-02-25
    • Invited
  • [Presentation] ゲーティングナノポアによる1分子 DNA シークエンシング2012

    • Author(s)
      谷口正輝
    • Organizer
      日本分析化学会第61年会 シンポジウム
    • Place of Presentation
      金沢大学 角間キャンパス (石川県金沢市)
    • Year and Date
      20120919-21
    • Invited
  • [Presentation] 1分子科学と1分子デバイス2012

    • Author(s)
      谷口正輝
    • Organizer
      第6回有機π電子系シンポジウム
    • Place of Presentation
      道後温泉 茶波瑠(愛媛県松山市)
    • Year and Date
      2012-12-14
    • Invited
  • [Presentation] 1分子を解析するナノポアデバイス2012

    • Author(s)
      谷口正輝
    • Organizer
      学術振興会174委員会 第40回研究会
    • Place of Presentation
      京都テルサ(京都府京都市)
    • Year and Date
      2012-09-28
    • Invited
  • [Presentation] 1分子エピゲノム解析技術の開発2012

    • Author(s)
      谷口正輝
    • Organizer
      大阪大学 蛋白質研究所セミナー エピゲノム解析の新技術とエピジェネティクス制御機構の新展開
    • Place of Presentation
      大阪大学 蛋白質研究所(大阪府吹田市)
    • Year and Date
      2012-09-27
    • Invited
  • [Presentation] ナノポアデバイスの1分子科学2012

    • Author(s)
      谷口正輝
    • Organizer
      文部科学省・科学研究費補助金・新学術領域研究「ソフトインターフェースの分子科学」 第3回ソフトインターフェースの分子科学ワークショップ「ソフト界面と計測・センシング」
    • Place of Presentation
      東京医科歯科大学 湯島キャンパス ( 東京都千代田区)
    • Year and Date
      2012-08-08
    • Invited
  • [Presentation] Next-next generation DNA sequencing system for single molecules2012

    • Author(s)
      M. Taniguchi
    • Organizer
      阪大産研・imec 国際シンポジウム 2012 imec ・Handai International Symposium 2012
    • Place of Presentation
      大阪大学 産業科学研究所 (大阪府茨木市)
    • Year and Date
      2012-06-05
  • [Presentation] Single-molecule electrical sequencing using gating nanopores2012

    • Author(s)
      M. Taniguchi
    • Organizer
      2nd Next Generation Sequencing
    • Place of Presentation
      Hyatt Harborside (Boston, MA, USA)
    • Year and Date
      2012-05-30
    • Invited
  • [Presentation] 1分子ナノポアシークエンシング技術2012

    • Author(s)
      谷口正輝
    • Organizer
      第6回日本エピジェネティック研究会
    • Place of Presentation
      国立情報学術研究所 学術総合センター(東京都千代田)
    • Year and Date
      2012-05-15
    • Invited
  • [Presentation] Single molecule electrical sequencing of DNA and RNA2012

    • Author(s)
      M. Taniguchi
    • Organizer
      International Symposium on Nanobiotechnology meets Holonic Commuication
    • Place of Presentation
      Nagoya University (Aichi)
    • Year and Date
      2012-03-23
    • Invited
  • [Presentation] Single-molecule electrical sequencing technology2012

    • Author(s)
      M. Taniguchi
    • Organizer
      The 15th SANKEN International Symposium 2012, The 10th SANKEN Nanotechnology Symposium
    • Place of Presentation
      Osaka University (Osaka)
    • Year and Date
      2012-01-12
    • Invited
  • [Presentation] Third-generation DNA sequencing technology using single-molecule analysis2011

    • Author(s)
      M. Taniguchi
    • Organizer
      China-japan Joint Symposium on Current and Future Molecular Electronics
    • Place of Presentation
      Nanjing University (China)
    • Year and Date
      2011-10-25
    • Invited
  • [Presentation] Development of gating nanopores for next-next DNA sequencing using mechanically controllable break-junctions2011

    • Author(s)
      M. Taniguchi
    • Organizer
      American Society of Mechanical Engineers, The Japan Society of Mechanical Engineers, and Korean Society of Mechanical Engineers, Joint Fluid Engineering Conference 2011
    • Place of Presentation
      ACT City Congress Center (Hamamatsu)
    • Year and Date
      2011-07-25
    • Invited
  • [Remarks] ホームページ等

    • URL

      http://www.bionano.sanken.osaka-u.ac.jp

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Published: 2015-07-16  

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