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2013 Fiscal Year Final Research Report

Controlling cell function by synthetic biology approaches

Research Project

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Project/Area Number 23681042
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field System genome science
Research InstitutionKyoto University

Principal Investigator

SAITO Hirohide  京都大学, 白眉センター, 准教授 (20423014)

Project Period (FY) 2011-04-01 – 2014-03-31
Keywords合成生物学 / RNA / 翻訳 / RNP / バイオエンジニアリング
Research Abstract

It is important to develop a method that controls gene expression dependent on intracellular environment.In synthetic biology field, researchers aim to understand life and develop new biotechnologies through the process of designing and constructing biomolecules and biological systems. However, designing functional biomolecules and systems to control cell function has remained a challenge. In this study, we designed synthetic "RNA switches" that detect specific proteins expressed in cells and control expression of target genes. As a result, we generated several RNA switches that function in mammalian cells (Nucleic Acids Res. 40:9369, 2012, Nucleic Acids Res. 41:e135, 2013, Nature Commun. 4:2393,2013).

  • Research Products

    (48 results)

All 2014 2013 2012 2011 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results) Presentation (27 results) (of which Invited: 14 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 3 results)

  • [Journal Article] RNA-protain nanotechnology & synthetic biology2014

    • Author(s)
      Hirohide Saito
    • Journal Title

      Seikagaku

      Volume: 86(1) Pages: 81-85

    • Peer Reviewed
  • [Journal Article] A three-dimensional design strategy for a protein-responsive shRNA switch2014

    • Author(s)
      Shunnichi Kashida, Hirohide Saito
    • Journal Title

      Methods Mol Biol

      Volume: 1111 Pages: 269-286

    • DOI

      10.1007/978-1-62703-755-6_20

    • Peer Reviewed
  • [Journal Article] Engineering protein-responsive mRNA switch in mammalian cells2014

    • Author(s)
      Kei Endo,Hirohide Saito
    • Journal Title

      Methods Mol Biol

      Volume: 1111 Pages: 183-196

    • DOI

      10.1007/978-1-62703-755-6_13

    • Peer Reviewed
  • [Journal Article] A versatile cis-acting inverter module for synthetic translational switches2013

    • Author(s)
      Kei Endo, Karin Hayashi, Tan Inoue , and Hirohide Saito
    • Journal Title

      Nature Communications

      Volume: 4 Pages: 2393

    • DOI

      10.1038/ncomms3393

    • Peer Reviewed
  • [Journal Article] Quantitative and stimulataneous translational control of distinct mammalian mRNAs2013

    • Author(s)
      Kei Endo, James A. Stapleton, Karin Hayashi, Hirohide Saito, and Tan Inoue
    • Journal Title

      Nucleic Acid Res

      Volume: 41(13) Pages: e135

    • DOI

      10.1093/nar/gkt347

    • Peer Reviewed
  • [Journal Article] Synthetic RNA–Protein Nanostructures and Their Potential Applications2013

    • Author(s)
      Hirohisa Ohno, Eriko Osada, Tan Inoue, and Hirohide Saito
    • Journal Title

      RNA Nanotechnology and Therapeutics, RNA Nanotechnology and Terapeutics

      Volume: 1 Pages: 303-312

    • DOI

      10.1201/B15152-22

    • Peer Reviewed
  • [Journal Article] 実験進化・人工システム構築からみえてくるRNA/RNPの新機能2013

    • Author(s)
      齊藤博英
    • Journal Title

      実験医学

      Volume: 31(7) Pages: 61-67

    • Peer Reviewed
  • [Journal Article] 複数の哺乳類 mRNA の同時かつ特異的な翻訳チューニング法2013

    • Author(s)
      遠藤慧、齊藤博英
    • Journal Title

      実験医学

      Volume: 32(4) Pages: 595-599

    • Peer Reviewed
  • [Journal Article] 人工 RNA を用いたナノバイオエンジニアリング2013

    • Author(s)
      齊藤博英
    • Journal Title

      超精密 (ULTRA PRECISION)

      Volume: 19 Pages: 38-43

    • Peer Reviewed
  • [Journal Article] Directed evolution of a synthetic RNA-protein module to create a new translational switch2013

    • Author(s)
      Tomoaki Hara, Hirohide Saito, and Tan Inoue
    • Journal Title

      Chem Commun (Camb)

      Volume: 49(37) Pages: 3833-3835

    • DOI

      10.1039/c3cc38688k

    • Peer Reviewed
  • [Journal Article] Three-dimensionally designed protein-responsive RNA devices for cell signaling regulation2012

    • Author(s)
      Shunnichi Kashida, Tan Inoue, and Hirohide Saito
    • Journal Title

      Nucleic Acids Res

      Volume: 40(18) Pages: 9369-9378

    • DOI

      10.1093/nar/gks668

    • Peer Reviewed
  • [Journal Article] Feedback Control of Protein Expression in Mammalian Cells by Tunable Synthetic Translational Inhibition2012

    • Author(s)
      James A. Stapleton, Kei Endo, Yoshihiko Fujita, Karin Hayashi, Masahiro Takinoue, Hirohide Saito, and Tan Inoue
    • Journal Title

      ACS Synth Biol

      Volume: 1(3) Pages: 83-88

    • DOI

      10.1021/sb200005w

    • Peer Reviewed
  • [Journal Article] Synthetic human cell fate regulation by protein-driven RNA swiches2011

    • Author(s)
      Hirohide Saito, Yoshihiko Fujita, Shunnichi Kashida, Karin Hayashi,Takayuki Katoh and Tan Inoue
    • Journal Title

      Nature Communications

      Volume: 2 Pages: 160

    • Peer Reviewed
  • [Journal Article] Synthetic RNA-protein complex shaped like an equilateral triangle2011

    • Author(s)
      Hirohisa Ohno, Tetsuhiro Kobayashi, Rinko Kabata, Kei Endo, Takuma Iwasa, Shige Yoshimura, Kunio , Tan Inoue, and Hirohide Saito
    • Journal Title

      Nat Nanotechnol

      Volume: 6(2) Pages: 116-120

    • DOI

      10.1038/nnano.2010.268

    • Peer Reviewed
  • [Journal Article] Self-Replication Reactions Dependent on Tertiary Interaction Motifs in an RNA Ligase Ribozyme2011

    • Author(s)
      Rei Ohmori, Hirohide Saito, Yochiya Ikawa,Yoshihiko Fujita,Tan Inoue
    • Journal Title

      J, Mol Evol

      Volume: 73(3-4) Pages: 221-229

    • DOI

      10.1007/s00239-011-9471-2

    • Peer Reviewed
  • [Journal Article] Damein Baigl Light-Regulated mRNA Condensation by a Photosensitive Surfactant Works as a Series Photoswitch of Translation Activity in the Presence of Small RNAs2011

    • Author(s)
      Sergii Rudiuk, Hirohide Saito, Tomoaki Hara, Tan Inoue, Kenichi Yoshikawa
    • Journal Title

      Biomacromolecules

      Volume: 12(11) Pages: 3945-51

    • DOI

      10.1021/bm200962s

    • Peer Reviewed
  • [Presentation] mRNAのエンジニアリングに基づく動物細胞の遺伝子発現制御系2014

    • Author(s)
      遠藤慧、齊藤博英
    • Organizer
      日本農芸化学会2014大会
    • Place of Presentation
      明治大学(神奈川県川崎市)
    • Year and Date
      2014-03-30
    • Invited
  • [Presentation] 人工RNAスイッチによる遺伝子操作と細胞運命制御2014

    • Author(s)
      齊藤博英
    • Organizer
      日本薬学会第134年会シンポジウム
    • Place of Presentation
      熊本大学(熊本県熊本市)
    • Year and Date
      2014-03-30
    • Invited
  • [Presentation] 人工RNAスイッチによる遺伝子操作と細胞運命制御(2014

    • Author(s)
      齊藤博英
    • Organizer
      バイオインダストリー協会合成生物学セミナー
    • Place of Presentation
      鉄鋼会館(東京都中央区)
    • Year and Date
      2014-01-27
    • Invited
  • [Presentation] RNA-proteinシンセティックバイオロジー・ナノテクノロジー2014

    • Author(s)
      齊藤博英
    • Organizer
      JAIST研究科セミナー
    • Place of Presentation
      北陸先端科学技術大学院大学(石川県能美市)
    • Year and Date
      2014-01-24
    • Invited
  • [Presentation] Engineering RNA binding proteins to study RNA trafficking and localization2014

    • Author(s)
      Callum Parr、齊藤博英
    • Organizer
      第7回武田科学振興財団薬科学シンポジウム
    • Place of Presentation
      武田薬品研修所(大阪府吹田市)
    • Year and Date
      2014-01-16
  • [Presentation] RNP Microarray : A large scale screening system of RNP interaction motifs2014

    • Author(s)
      樫田俊一、齊藤博英
    • Organizer
      第7回武田科学振興財団薬科学シンポジウム
    • Place of Presentation
      武田薬品研修所(大阪府吹田市)
    • Year and Date
      2014-01-16
  • [Presentation] High-resolution identification of cell types by microRNA - responsive mRNAs2014

    • Author(s)
      遠藤慧、齊藤博英
    • Organizer
      第7回武田科学振興財団薬科学シンポジウム
    • Place of Presentation
      武田薬品研修所(大阪府吹田市)
    • Year and Date
      2014-01-16
  • [Presentation] RNAスイッチ : ナノ構造と人工回路設計の共通原理2014

    • Author(s)
      齊藤博英
    • Organizer
      第16回生命化学研究会
    • Place of Presentation
      KKRホテル熱海(静岡県熱海市)
    • Year and Date
      2014-01-09
    • Invited
  • [Presentation] Synthetic RNP-based nanostructures and translational switches : Possible therapeutic applications2013

    • Author(s)
      Hirohide SAITO
    • Organizer
      2013 International Conference of RNA Nanotechnology and Therapeutics
    • Place of Presentation
      Crown Plaza-The Campbell House(Lexington, KY, USA)
    • Year and Date
      20130402-06
  • [Presentation] Synthetic RNA-protein complexes to control mammalian cell fate2013

    • Author(s)
      齊藤博英
    • Organizer
      The First Annual Winter q-bio Meeting 2013
    • Place of Presentation
      ilton Hawaiian Village The First Annual Winter q-bio Meeting 2013 (Waikiki, USA)
    • Year and Date
      20130218-23
  • [Presentation] 人工RNAを用いた細胞運命制御2013

    • Author(s)
      齊藤博英
    • Organizer
      定量生物学の会第6回年会
    • Place of Presentation
      大阪大学(大阪府吹田市)
    • Year and Date
      2013-11-22
  • [Presentation] 人工RNAによる情報と構造変換:RNA分子ロボティクスに向けて2013

    • Author(s)
      齊藤博英
    • Organizer
      細胞を創る研究会6.0
    • Place of Presentation
      鶴岡市先端研究産業支援センター(山形県鶴岡市)
    • Year and Date
      2013-11-14
    • Invited
  • [Presentation] 人工RNA-Protein複合体による細胞内外で機能する分子ロボットの創出にむけて2013

    • Author(s)
      齊藤博英
    • Organizer
      第51回日本生物物理学会
    • Place of Presentation
      京都国際会館(京都府京都市)
    • Year and Date
      2013-10-28
  • [Presentation] RNA-protein-based nanostructures and translation swiches2013

    • Author(s)
      齊藤博英
    • Organizer
      DNA19
    • Place of Presentation
      Arizona State University (Arizona, USA)
    • Year and Date
      2013-09-23
  • [Presentation] RNA分子・システムを活用した細胞機能の制御2013

    • Author(s)
      齊藤博英
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      愛媛県立文化会館(愛媛県松山市)
    • Year and Date
      2013-07-25
    • Invited
  • [Presentation] RNPナノ構造体を活用したRNA動的構造変換過程の直接観察および細胞機能制御技術の開発2013

    • Author(s)
      長田江里子, 勇輝, 日高久美, 杉山弘, 藤政幸, 齊藤博英
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      愛媛県立文化会館(愛媛県松山市)
    • Year and Date
      2013-07-24
  • [Presentation] mRNAエンジニアリングによる外来遺伝子の発現制御2013

    • Author(s)
      遠藤慧、井上丹、齊藤博英
    • Organizer
      第15回日本RNA学会年会
    • Place of Presentation
      愛媛県立文化会館(愛媛県松山市)
    • Year and Date
      2013-07-24
  • [Presentation] Synthetic RNP-based nanostructures and translational ON/OFF switches2013

    • Author(s)
      Hirohide SAITO
    • Organizer
      FNANO 13 meeting
    • Place of Presentation
      The Snowbird Cliff Lodge(Snowbird, UT, USA)
    • Year and Date
      2013-04-17
    • Invited
  • [Presentation] RNA-たんぱく質複合体を用いたナノバイオエンジニアリング2013

    • Author(s)
      齊藤博英
    • Organizer
      精密工学会超精密加工専門委員会第65回研究会
    • Place of Presentation
      メルパルク大阪(大阪府)
    • Year and Date
      2013-01-29
    • Invited
  • [Presentation] 第10回日本分子生物学会三菱化学奨励賞受賞講演2012

    • Author(s)
      齊藤博英
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場(福岡県)
    • Year and Date
      2012-12-13
    • Invited
  • [Presentation] Synthetic RNA-Protein Complexes for Controlling Cell Signaling2012

    • Author(s)
      齊藤博英
    • Organizer
      生体機能関連部会国際シンポジウム
    • Place of Presentation
      東京工業大学蔵前会館(東京都)
    • Year and Date
      2012-11-29
    • Invited
  • [Presentation] 人工RNAスイッチによる自律的な細胞運命制御システムの構築に向けて2012

    • Author(s)
      齊藤博英
    • Organizer
      定量生物学の会第5回年会
    • Place of Presentation
      東京大学(東京都)
    • Year and Date
      2012-11-23
    • Invited
  • [Presentation] 細胞内シグナル回路をデザインするRNAテクノロジー2012

    • Author(s)
      齊藤博英
    • Organizer
      第5回北陸合同バイオ若手シンポジウム
    • Place of Presentation
      福井県民ホール(福井県)
    • Year and Date
      2012-11-02
    • Invited
  • [Presentation] 分子ロボティクスにおける感覚機能の実装にむけて2012

    • Author(s)
      齊藤博英
    • Organizer
      生命医薬情報学連合大会
    • Place of Presentation
      タワーホール船堀(東京都)
    • Year and Date
      2012-10-15
  • [Presentation] 人工RNAシステムを活用した遺伝子操作・細胞運命制御技術体系の創出2012

    • Author(s)
      齊藤博英、遠藤慧
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      東北大学百周年記念会館川内萩ホール(宮城県)
    • Year and Date
      2012-07-19
  • [Presentation] Synthetic RNA-protein technologies for controlling translation in mammalian cells2012

    • Author(s)
      齊藤博英
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2012-06-21
  • [Presentation] 人工RNAを用いる新しい遺伝子操作技術2012

    • Author(s)
      齊藤博英
    • Organizer
      ヒト多機能性幹細胞の培養・解析の標準化レクチャーシリーズ第6回幹細胞の遺伝子操作の実践
    • Place of Presentation
      理化学研究所神戸研究所発生・再生科学総合研究センター(神戸市)
    • Year and Date
      2012-02-02
    • Invited
  • [Book] 進化分子工学~高速分子進化によるタンパク質・核酸の開発~2013

    • Author(s)
      齊藤博英、他57名
    • Total Pages
      466(243-252)
    • Publisher
      エヌ・ティー・エス書名
  • [Remarks] ホームページ等

    • URL

      http://www.cira.kyoto-u.ac.jp/saito/

  • [Patent(Industrial Property Rights)] miRNAの発現を指標として所望の細胞腫を判別する方法2014

    • Inventor(s)
      齊藤博英、遠藤慧
    • Industrial Property Rights Holder
      京都大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      特願2014-003726
    • Filing Date
      2014-01-10
    • Overseas
  • [Patent(Industrial Property Rights)] タンパク質と高次構造を含むRNAとの相互作用を検出するためのRNAマイクロアレイ2014

    • Inventor(s)
      齊藤博英、樫田俊一、田谷敏貴
    • Industrial Property Rights Holder
      京都大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      特願2014-003734
    • Filing Date
      2014-01-10
    • Overseas
  • [Patent(Industrial Property Rights)] RNA-蛋白質相互作用モチーフを利用した蛋白質翻訳量調整システム2012

    • Inventor(s)
      齊藤博英、遠藤慧、井上丹
    • Industrial Property Rights Holder
      齊藤博英、遠藤慧、井上丹
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      US仮出願番号61/672,219
    • Filing Date
      2012-07-16
    • Overseas

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Published: 2015-07-16  

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