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2012 Fiscal Year Final Research Report

Analysis of non-reference genome sequence in the human population

Research Project

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Project/Area Number 23790389
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Human genetics
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

FUJIMOTO Akihiro  独立行政法人理化学研究所, 情報解析研究チーム, 上級研究員 (30525853)

Project Period (FY) 2011 – 2012
Keywords全ゲノムシークエンス / 非標準ゲノム配列 / 次世代シークエンサー
Research Abstract

We previously performed whole genome sequence of a Japanese individual and identified non-reference genome sequences from unmapped reads. To characterize non-reference genome sequences, we gathered unmapped read sequences from additional multiple Japanese individuals, and conducted de novo assembly. Approximately 4Mbp none-reference genome sequences were obtained.

  • Research Products

    (11 results)

All 2013 2012 2011

All Journal Article (3 results) (of which Peer Reviewed: 1 results) Presentation (8 results)

  • [Journal Article] Whole genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators.2012

    • Author(s)
      FujimotoA, Totoki Y, Abe T, BoroevichKA, Hosoda F, NguyenHH, Aoki M, Hosono N, Kubo M, Miya F, AraiY, Takahashi H, Shirakihara T, Nagasaki M, Shibuya T, Nakano K, Watanabe-Makino K, Tanaka H, Nakamura H, Kusuda J, Ojima H, Shimada K, Okusaka T, Ueno M, ShigekawaY, Kawakami Y, Arihiro K, Ohdan H, GotohK, Ishikawa O, Ariizumi S, Yamamoto M, Yamada T, Chayama K, Kosuge T, Yamaue H, KamataniN, Miyano S, Nakagama H, Nakamura Y, Tsunoda T, Shibata T, and Nakagawa H.
    • Journal Title

      Nat Genet

      Volume: 44 Pages: 760-764

    • Peer Reviewed
  • [Journal Article] 次世代シークエンサーを用いた日本人ゲノム解読による遺伝的多様性の包括的解析2012

    • Author(s)
      藤本明洋, 中川英刀, 角田逹彦
    • Journal Title

      最新医学2012年

      Volume: 67巻1号 Pages: 132-136

  • [Journal Article] 次世代シークエンサーを用いた日本人ゲノム解読による遺伝的多様性の包括的解析2011

    • Author(s)
      藤本明洋, 中川英刀, 角田逹彦
    • Journal Title

      生体の科学

      Volume: Vol. 62 No.6

  • [Presentation] Comprehensive analysis of genetic variation by whole genome sequencing2013

    • Author(s)
      A Fujimoto, Y Totoki, S Miyano, T Tsunoda, T Shibata, and H Nakagawa
    • Organizer
      九州大学 ゲノミクスエピゲノミクス研究拠点セミナー
    • Place of Presentation
      福岡
    • Year and Date
      2013-01-21
  • [Presentation] Whole genome sequence of Japanese individual and liver cancer2013

    • Author(s)
      A Fujimoto
    • Organizer
      Radiation Research in the Post-genomic Era
    • Place of Presentation
      広島
    • Year and Date
      2013-01-21
  • [Presentation] Whole-genome sequencing of liver cancers identifies etiological influences on mutation patterns and recurrent mutations in chromatin regulators2012

    • Author(s)
      A Fujimoto, Y Totoki, T Abe, K A Boroevich, F Hosoda, H Hi Nguyen, M Aoki, N Hosono, M Kubo, F Miya, Y Arai, H Takahashi, T Shirakihara, M Nagasaki, T Shibuya, K Nakano, K Watanabe-Makino, H Tanaka, H Nakamura, J Kusuda, H Ojima, K Shimada, T Okusaka, M Ueno, Y Shigekawa, Y Kawakami, K Arihiro, H Ohdan, K Gotoh, O Ishikawa, S Ariizumi, M Yamamoto, T Yamada, K Chayama, T Kosuge, H Yamaue, N Kamatani, S Miyano, H Nakagama, Y Nakamura, T Tsunoda, T Shibata & H Nakagawa
    • Organizer
      ASHG 62nd Annual Meeting
    • Place of Presentation
      San Francisco, CA, USA
    • Year and Date
      20121106-10
  • [Presentation] 肝臓がん27 例の全ゲノム解析2012

    • Author(s)
      藤本明洋, 十時泰, 細田文恵, Ha Hai Nguyen,青木正幸, 久保充明, 宮野悟, 中釜 斉, 中村祐輔, 角田逹彦, 柴田 龍弘, 中川英刀
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      福岡
    • Year and Date
      20120924-26
  • [Presentation] Whole genome sequence and comprehensive analysis of Hepatocellular carcinoma genome2012

    • Author(s)
      A Fujimoto, Y Totoki, S Miyano, T Tsunoda, T Shibata, and H Nakagawa
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      札幌
    • Year and Date
      20120919-21
  • [Presentation] Whole genome sequence of a Japanese individual with massively parallel sequencing technology2011

    • Author(s)
      A Fujimoto, H Nakagawa, N Hosono, K Nakano, T Abe, K Boroevich, M Nagasaki, R Yamaguchi, T Shibuya, M Kubo, S Miyano, N Kamatani, Y Nakamura & T Tsunoda
    • Organizer
      第11回東アジア人類遺伝学会
    • Place of Presentation
      千葉
    • Year and Date
      20111109-12
  • [Presentation] 次世代シークエンサーを用いた日本人一個体の全ゲノムシークエンスと遺伝的多様性の包括的解析2011

    • Author(s)
      藤本明洋, 中川英刀, 細野直哉, 中野かおる,阿部哲雄, 長崎正朗, 山口類, 久保充明, 宮野悟, 中村祐輔, 角田逹彦
    • Organizer
      人類学会第65回大会
    • Place of Presentation
      沖縄
    • Year and Date
      20111104-06
  • [Presentation] 次世代シークエンサーを用いた日本人一個体の全ゲノムシークエンスと遺伝的多様性の包括的解析2011

    • Author(s)
      藤本明洋, 中川英刀, 細野直哉, 中野かおる,阿部哲雄, 長崎正朗, 山口類, 久保充明, 宮野悟, 中村祐輔, 角田逹彦
    • Organizer
      進化学会第13回大会
    • Place of Presentation
      京都
    • Year and Date
      20110729-31

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Published: 2014-09-25  

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