• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2012 Fiscal Year Final Research Report

Comprehensive analysis of cardiomyopathy-related signaling networks based on quantitative phosphoproteomics

Research Project

  • PDF
Project/Area Number 23790889
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Circulatory organs internal medicine
Research InstitutionKyoto University

Principal Investigator

WAKABAYASHI Masaki  京都大学, 大学院・薬学研究科, 助教 (70552024)

Project Period (FY) 2011 – 2012
Keywords心筋症 / リン酸化プロテオミクス / 定量プロテオミクス
Research Abstract

In this study, a novel method for reproducible, unbiased, and quantitative extraction of tissue proteins was successfully developed. Using this method combined with an optimized protocol for phosphopeptide enrichment and LC-MS/MS analysis, more than 6,000 phosphopeptides were identified and quantified from two kinds of mouse models for cardiomyopathy and a control one, and 20% of the identified peptides showed more than two-fold changes in MS signals. From these data, I am attempting to identify specific signal networks closely related to the onset and development of cardiomyopathy.

  • Research Products

    (16 results)

All 2013 2012 2011

All Journal Article (4 results) Presentation (11 results) Book (1 results)

  • [Journal Article]2013

    • Author(s)
      Ryota Yamana, Mio Iwasaki, Masaki Wakabayashi, Masato Nakagawa, Shinya Yamanaka, Yasushi Ishihama
    • Journal Title

      Journal of Proteome Research

      Volume: 12 Pages: 214-221

    • DOI

      DOI:10.1021/pr300837u

  • [Journal Article] Temporal Profiling of Lapatinib-suppressed Phosphorylation Signals in EGFR/HER2 Pathways2012

    • Author(s)
      Koshi Imami, Naoyuki Sugiyama, Haruna Imamura, Masaki Wakabayashi, Masaru Tomita, Masatoshi Taniguchi, Takayuki Ueno, Masakazu Toi, Yasushi Ishihama
    • Journal Title

      Molecular and Cellular Proteomics

      Volume: 11 Pages: 1741-1757

    • DOI

      DOI:10.1074/mcp.M112.019919

  • [Journal Article] A putative polypeptide N-acetylgalactosaminyltransferase/Williams-Beuren syndrome chromosome region 17 (WBSCR17) regulates lamellipodium formation and macropinocytosis2012

    • Author(s)
      Yoshiaki Nakayama, Naosuke Nakamura, Sayoko Oki, Masaki Wakabayashi, Yasushi Ishihama, Ayumi Miyake, Nobuyuki Itoh, Akira Kurosaka.
    • Journal Title

      The Journal of Biological Chemistry

      Volume: 287 Pages: 32222-32235

    • DOI

      DOI:10.1074/jbc.M112.370932

  • [Journal Article] Analytical strategies for shotgun phosphoproteomics: status and prospects2012

    • Author(s)
      Haruna Imamura, Masaki Wakabayashi, Yasushi Ishihama
    • Journal Title

      Seminars in Cell & Developmental Biology

      Volume: 23 Pages: 836-842

    • DOI

      DOI:10.1016/j.semcdb.2012.05.007

  • [Presentation] リン酸化プロテオミクスを用いた分子標的薬プロファイリング2013

    • Author(s)
      若林真樹
    • Organizer
      日本薬学会第133 年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      20130327-30
  • [Presentation] ジメチル標識ペプチドのRP-LC における保持共同評価と定量プロテオミクスの高効率化2012

    • Author(s)
      若林真樹
    • Organizer
      第23回クロマトグラフィー科学会議
    • Place of Presentation
      長良川国際会議場(岐阜)
    • Year and Date
      20121115-16
  • [Presentation] In-depth pharmaco-phosphoproteomics using meter-long monolithic columns to evaluate molecular-targeting drugs2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      19th International Mass Spectrometry Conference
    • Place of Presentation
      京都国際会館(京都)
    • Year and Date
      20120915-21
  • [Presentation] Highly sensitive phosphoproteome profiling of various human cancers from minuscule amount of formalin-fixed and paraffin-embedded tissue sections on slides2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      HUPO 2012 11th Annual World Congress
    • Place of Presentation
      Boston (USA)
    • Year and Date
      20120909-13
  • [Presentation] リン酸化修飾シグナル病の解明に向けた極微量臨床試料解析法の構築2012

    • Author(s)
      若林真樹
    • Organizer
      第25回バイオメディカル分析化学シンポジウム
    • Place of Presentation
      慶応大学薬学部(東京)
    • Year and Date
      20120808-10
  • [Presentation] リン酸化プロテオーム計測システムの高感度化と極微量組織試料への応用2012

    • Author(s)
      若林真樹
    • Organizer
      第11回次世代を担う若手のためのフィジカルファマフォラム
    • Place of Presentation
      ホテル平安の森京都(京都)
    • Year and Date
      20120806-07
  • [Presentation] 微量組織試料のリン酸化プロテオーム解析法2012

    • Author(s)
      若林真樹
    • Organizer
      日本プロテオーム学会2012 年大会
    • Place of Presentation
      日本科学未来館(東京)
    • Year and Date
      20120726-27
  • [Presentation] Enhanced identification of phosphopeptides by peptide dimethylation coupled with titania chromatography2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      60th American Society for Mass Spectrometry Conference
    • Place of Presentation
      Vancouver (Canada)
    • Year and Date
      20120520-24
  • [Presentation] Enhanced identification of phosphopeptides by peptide dimethylation coupled with titania chromatography2012

    • Author(s)
      Masaki Wakabayashi
    • Organizer
      Asia Oceania Human Proteome Organization 6th Congress
    • Place of Presentation
      Beijing (China)
    • Year and Date
      20120505-07
  • [Presentation] 高感度LC-MS/MS システムを用いた極微量組織試料のプロテオーム解析技術の確立2011

    • Author(s)
      若林真樹、増田豪、石濱泰
    • Organizer
      第22回クロマトグラフィー科学会
    • Place of Presentation
      東北大学(宮城)
    • Year and Date
      20111020-22
  • [Presentation] 微量組織試料に対する定量的リン酸化プロテオーム解析法の確立2011

    • Author(s)
      若林真樹、塚原麻伊、吉原宏樹、増田豪、石濱泰
    • Organizer
      日本プロテオーム学会 2011 年大会
    • Place of Presentation
      朱鷺メッセ(新潟)
    • Year and Date
      20110728-30
  • [Book] ナノバイオ技術と最新創薬応用研究2012

    • Author(s)
      若林真樹、杉山直幸、石濱泰
    • Total Pages
      102-108
    • Publisher
      メディカルドゥ

URL: 

Published: 2014-09-25  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi