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2012 Fiscal Year Final Research Report

Structure based design of novel RNA aptamer against AML1

Research Project

  • PDF
Project/Area Number 23870026
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionTokyo University of Science

Principal Investigator

NOMURA Yusuke  東京理科大学, 理学部・応用化学科, 助教 (10609308)

Project Period (FY) 2011 – 2012
KeywordsRNA アプタマー / 立体構造
Research Abstract

The purpose of this study is to obtain a novel RNA aptamer against AML1 Runt domain by the structure based design.
(1)The designed aptamer, Apt14 has high affinity for the Runt domain.
(2) The mutant analysis of the Apt14 suggested that internal loop and terminal stem structure are important for the affinity to the Runt domain.

  • Research Products

    (6 results)

All 2013 2012 2011

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (5 results)

  • [Journal Article] The Runt domain of AML1 (RUNX1) binds a sequence-conserved RNA motif that mimics a DNA element2013

    • Author(s)
      Jun-ichi Fukunaga*, Yusuke Nomura*, Yoichiro Tanaka*, Taku Tanaka, Yoshikazu Nakamura, Gota Kawai, Taiichi Sakamoto, and Tomoko Kozu
    • Journal Title

      RNA

      Volume: 19 Pages: 927-936

    • Peer Reviewed
  • [Presentation] NMR analysis of the interaction between AML1 Runt domain and RNA aptamer2012

    • Author(s)
      Ryo Amano, Yusuke Nomura, Takashi Nagata, Jun-ichi Fukunaga, Yoichiro Tanaka, Masato Katahira, Yoshikazu Nakamura, Tomoko Kozu and Taiichi Sakamoto
    • Organizer
      2012 ICMRBS
    • Place of Presentation
      Lyon France
    • Year and Date
      20120819-24
  • [Presentation] AML1 Runt domain に結合する RNA アプタマーの改良2012

    • Author(s)
      野村祐介,山崎 香,福永淳一,田中陽一郎,中村義一,神津知子,坂本泰一,鳥越秀峰
    • Organizer
      第14回 RNA ミーティング
    • Place of Presentation
      東北大学百周年記念会館川内萩ホール
    • Year and Date
      20120718-20
  • [Presentation] RNA アプタマーと AML1 Runt domain の相互作用解析2012

    • Author(s)
      天野亮,野村祐介,永田崇,福永淳一,田中陽一郎,片平正人,中村義一,神津知子,坂本泰一
    • Organizer
      第14回 RNA ミーティング
    • Place of Presentation
      東北大学百周年記念会館川内萩ホール
    • Year and Date
      20120718-20
  • [Presentation] 転写因子 AML1 の DNA 結合ドメインに結合する RNA モチーフの解析2011

    • Author(s)
      福永淳一,野村祐介,中村義一,坂本泰一,神津知子
    • Organizer
      CREST「生命現象の解明と応用に資する新しい計測・分析基盤技術」研究領域シンポジウム
    • Place of Presentation
      東京ガーデンパレス
    • Year and Date
      20111212-13
  • [Presentation] RNA アプタマーの立体構造解析2011

    • Author(s)
      坂本泰一,野村祐介
    • Organizer
      CREST「生命現象の解明と応用に資する新しい計測・分析基盤技術」研究領域シンポジウム
    • Place of Presentation
      東京ガーデンパレス
    • Year and Date
      20111212-13

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Published: 2014-08-29  

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