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2023 Fiscal Year Research-status Report

Evolutionary forces driving the diversity of protist symbioses

Research Project

Project/Area Number 23K14256
Research InstitutionOkinawa Institute of Science and Technology Graduate University

Principal Investigator

HUSNIK Filip  沖縄科学技術大学院大学, 進化・細胞・共生の生物学ユニット, 准教授 (30886130)

Project Period (FY) 2023-04-01 – 2025-03-31
Keywordssymbiosis / protist / bacteria / archaea / genomics / organelle / evolution / mitochondrion
Outline of Annual Research Achievements

Our major published achievements so far include work on 7 (6 symbiont-derived) genomes in a single cryptomonad cell (George et al., Cur Biol 2023) and a study showing that previously reported symbionts in Symbiomonas were misidentified giant viruses (Cho et al., PLoS Genetics, 2024).

Current Status of Research Progress
Current Status of Research Progress

1: Research has progressed more than it was originally planned.

Reason

Due to the solid preparation status with many samples already collected or cultured in my group, the initial plan to screen a diversity of protists for symbionts is largely finished.

Strategy for Future Research Activity

In the FY2024, we will proceed with a detailed characterization of the selected systems. So far, we published our work on 2 species (Cryptomonas and Symbiomonas). A manuscript on 7 species of large benthic foraminifera is currently drafted and additional manuscripts on >5 systems are in preparation. We will thus reach the number of ~10 characterized systems as proposed in the application.

Causes of Carryover

Major costs of this project relate to sequencing where we have to fill a sequencing lane with our samples and the numbers are difficult to plan since sequencing coverage of protists is highly variable depending on genome size. The incurring amount will be used in the next fiscal year for laboratory consumables required for the detailed symbiont characterization.

  • Research Products

    (10 results)

All 2024 2023

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 2 results,  Open Access: 1 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but do reveal the presence of giant viruses2024

    • Author(s)
      Anna Cho ,Gordon Lax,Samuel J. Livingston,Yumiko Masukagami,Mariia Naumova,Olivia Millar,Filip Husnik,Patrick J. Keeling
    • Journal Title

      PLoS Genetics

      Volume: NA Pages: NA

    • DOI

      10.1371/journal.pgen.1011218

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A single cryptomonad cell harbors a complex community of organelles, bacteria, a phage, and selfish elements2023

    • Author(s)
      George EE, Barcyte D, Lax G, Livingston S, Tashyreva D, Husnik F, Lukes J, Elias M, Keeling PJ
    • Journal Title

      Current Biology

      Volume: 33 Pages: 1982-1996

    • DOI

      10.1016/j.cub.2023.04.010

    • Peer Reviewed / Int'l Joint Research
  • [Presentation] Cataloging Marine Symbioses with Omics and Advanced Imaging Methods.2024

    • Author(s)
      Husnik, F
    • Organizer
      WPI AIMEC (Tohoku University/JAMSTEC)
    • Invited
  • [Presentation] Integrating Diverse Subcellular, Single-Cell, and Three-Dimensional Methods to Understand How Endosymbionts Become Organelles.2023

    • Author(s)
      Husnik, F
    • Organizer
      Gordon Research Conference on Animal-Microbe Symbioses
  • [Presentation] Integrating omics with 3D imaging to understand how endosymbionts become organelles2023

    • Author(s)
      Husnik, F
    • Organizer
      ECOP-ISOP Joint Meeting
    • Int'l Joint Research
  • [Presentation] Two Billion Years of Eukaryotic Symbioses: Major Transitions and Cellular Innovations2023

    • Author(s)
      Husnik, F
    • Organizer
      SymbNET PhD Summer School on Host-Microbe Symbioses
    • Invited
  • [Presentation] Integrating omics with 3D imaging for symbioses of uncultivated aquatic protists.2023

    • Author(s)
      Husnik, F
    • Organizer
      SymbNET PhD Summer School on Host-Microbe Symbioses
    • Invited
  • [Presentation] Integrating omics with 3D imaging to understand how endosymbionts become organelles.2023

    • Author(s)
      Husnik, F
    • Organizer
      Beijing Normal University
    • Invited
  • [Presentation] Eukaryotic symbioses of large benthic foraminifera2023

    • Author(s)
      Langlet D., Ruppli R., Suzuki N.H., Sur O., Phua Y.H., Fujita K., and Husnik F.
    • Organizer
      FORAMS
    • Int'l Joint Research
  • [Presentation] Exploring Marine Symbioses with Genomics, Advanced Imaging, and AI Tools2023

    • Author(s)
      Husnik, F
    • Organizer
      Tohoku University
    • Invited

URL: 

Published: 2024-12-25  

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