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2013 Fiscal Year Final Research Report

Construction of novel molecular mechanism on polysaccharide-forming enzyme and its application

Research Project

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Project/Area Number 24658089
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeSingle-year Grants
Research Field Applied biochemistry
Research InstitutionHokkaido University

Principal Investigator

KIMURA Atsuo  北海道大学, (連合)農学研究科(研究院), 教授 (90186312)

Project Period (FY) 2012-04-01 – 2014-03-31
Keywords多糖 / ドメイン / 合成
Research Abstract

Purpose of this research is the elucidation of structural elements of polysaccharide-producing enzyme and middle-size-oligosaccharide-producing enzyme. Furthermore, the formation of new oligosaccharide is also purpose of this study by controlling the structural element. The obtained results were as follows; (1) Polysaccharide-producing enzyme: Catalytic amino acids were two Glu. Polysaccharide-forming structural element was in the C-terminal region of enzyme. (2) Middle-size-oligosaccharide-producing enzyme: Three-dimensional structure was elucidated, and catalytic residues were Asp and Glu. Mutation analyses of two aromatic residues at sites distant from catalytic center revealed that one residue improved the enzyme function.

  • Research Products

    (26 results)

All 2014 2013 2012 Other

All Journal Article (14 results) (of which Peer Reviewed: 14 results) Presentation (8 results) (of which Invited: 3 results) Book (1 results) Remarks (3 results)

  • [Journal Article] Structural elucidation of cyclization mechanism ofα-1,6-glucan by Bacillus circulans T3040 cycloisomaltooligo- saccharide glucanotransferase2014

    • Author(s)
      Nobuhiro Suzuki, Zui Fujimoto, Young-Min Kim, Mitsuru Momma, Naomi Kishine, Ryuichiro Suzuki, Shiho Suzuki, Shinsichi Kitamura, Mikihiko Kobayashi, Atsuo Kimura, Kazumi Funane
    • Journal Title

      J Biol Chem

      Volume: 288(26): in press

    • DOI

      10.1074/jbc.M114.547992

    • Peer Reviewed
  • [Journal Article] Evidence for cycloisomaltooligosac- charide production from starch by Bacillus circulans T-30402014

    • Author(s)
      Kazumi Funane, Hitomi Ichinose, Motomi Araki, Ryuichiro Suzuki, Keitarou Kimura, Zui Fujimoto, Mikihiko Kobayashi, Atsuo Kimura
    • Journal Title

      Appl Microbiol Biotechnol

      Volume: 98(9) Pages: 3947-3954

    • DOI

      10.1007/s00253-014-5515-z

    • Peer Reviewed
  • [Journal Article] 糖質酵素の分子機構に関する研究2014

    • Author(s)
      木村淳夫
    • Journal Title

      応用糖質科学

      Volume: 4(1) Pages: 3-16

    • URL

      http://jsag.jp/index_j.html

    • Peer Reviewed
  • [Journal Article] Replacement of the catalytic nucleophile aspartyl residue of dextran glucosidase by cysteinesulfinate enhances transglycosylation activity2013

    • Author(s)
      Wataru Saburi, Momoko Kobayashi, Haruhide Mori, Masayuki Okuyama, Atsuo Kimura
    • Journal Title

      J Biol Chem

      Volume: 288(44) Pages: 31670-31677

    • DOI

      10.1074/jbc.M113.491449

    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analyses of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-30402013

    • Author(s)
      Nobuhiro Suzuki, Young-Min Kim, Mitsuru Momma, Zui Fujimoto, Mikihiko Kobayashi, Atsuo Kimura, Kazumi Funane
    • Journal Title

      Acta Crystallogr

      Volume: F 69 Pages: 946- 949

    • DOI

      10.1107/S174430911301991X

    • Peer Reviewed
  • [Journal Article] Molecular basis for the recognition of long-chain substrates by plantα-glucosidase2013

    • Author(s)
      Takayoshi Tagami, Keitaro Yamashita, Masayuki Okuyama, Haruhide Mori, Min Yao, Atsuo Kimura
    • Journal Title

      J Biol Chem

      Volume: 288(26) Pages: 19296- 19303

    • DOI

      10.1074/jbc.M113.465211

    • Peer Reviewed
  • [Journal Article] A novel mechanism for promotion of quercetin glycoside absorption by megaloα-1,6-gluco- saccharide in the rat small intestine2013

    • Author(s)
      Aki Shinoki, Weeranuch Lang, Charin Thawo- rnkuno, Hee-Kwon Kang, Yuya Kumagai, Masayuki Okuyama, Haruhide Mori, Atsuo Kimura, Satoshi Ishizuka, Hiroshi Hara
    • Journal Title

      Food Chem

      Volume: 136(2) Pages: 293-296

    • DOI

      10.1016/j.foodchem.2012.08.028

    • Peer Reviewed
  • [Journal Article] Key aromatic residue, possibly presenting at subsite +2 and +3, of glycoside hydrolase family 31α-glucosidase regulates recognition on long-chain substrates2013

    • Author(s)
      Takayoshi Tagami, Masayuki Okuyama, Hiroyuki Nakai, Young-Min Kim, Haruhide Mori, Kazunori Taguchi, Birte Svensson, Atsuo Kimura
    • Journal Title

      Biochim Biophys Acta

      Volume: 1834(1) Pages: 329-335

    • DOI

      10.1016/j.bbapap.2012.08.007

    • Peer Reviewed
  • [Journal Article] Amino acids in conserved region II are crucial for substrate specificity, reaction velocity, and regioselectivity in transglucosylation of honey- bee GH-13α-glucosidases2012

    • Author(s)
      Lukana Ngiwsara, Gaku Iwai, Takayoshi Tagami, Natsuko Sato, Hiroyuki Nakai, Masayuki Okuyama, Haruhide Mori, Atsuo Kimura
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 76(10) Pages: 1967-1974

    • DOI

      10.1271/bbb.120473

    • Peer Reviewed
  • [Journal Article] Bacteroides the- taiotaomicron VPI-5482 glycoside hydrolase family 66 homolog catalyzes dextranolytic and cyclization reactions2012

    • Author(s)
      Young-Min Kim, Eiji Yamamoto, Min-Sun Kang, Hiroyuki Nakai, Wataru Saburi, Masa- yuki Okuyama, Haruhide Mori, Kazumi Funane, Doman Kim, Atsuo Kimura
    • Journal Title

      FEBS J

      Volume: 279(17) Pages: 3185- 3191

    • DOI

      10.1111/j.1742-4658.2012.08698.x

    • Peer Reviewed
  • [Journal Article] Degree of polymerization in dietaryα-1,6-glucosaccharides modulates symptom of experimental colitis in rats2012

    • Author(s)
      Hitoshi Iwaya, Jae-Sung Lee, Shinya Yamagishi, Aki Shinoki, Weeranuch Lang, Hee- Kwon Kang, Masayuki Okuyama, Haruhide Mori, Hiroshi Hara, Atsuo Kimura, Satoshi Ishizuka
    • Journal Title

      Plos One

      Volume: 7(11) Pages: e50658

    • DOI

      10.1371/journal.pone.0050658

    • Peer Reviewed
  • [Journal Article] Biochemical characterization of a cycloisomaltooligosaccharide glucanotransferase from Paenibacillus sp. 598K2012

    • Author(s)
      Ryuichiro Suzuki, Kazue Terasawa, Keitarou Kimura, Zui Fujimoto, Mitsuru Momma, Mikihiko Kobayashi, Atsuo Kimura, Kazumi Funane
    • Journal Title

      Biochim Biophys Acta

      Volume: 1824(7) Pages: 919-924

    • DOI

      10.1016/j.bbapap.2012.04.001

    • Peer Reviewed
  • [Journal Article] Novel dextranase catalyzing cycloisomaltooligosaccharide-formation and its identification of catalytic amino acids and their functions using chemical rescue approach2012

    • Author(s)
      Young-Min Kim, Yoshiaki Kiso, Tomoe Muraki, Min-Sun Kang, Hiroyuki Nakai, Wataru Saburi, Weeranuch Lang, Hee-Kwon Kang, Masayuki Okuyama, Haruhide Mori, Ryuichirou Suzuki, Kazumi Funane, Nobuhiro Suzuki, Mitsuru Momma, Zui Fujimoto, Tetsuya Oguma, Mikihiko Kobayashi, Doman Kim, Atsuo Kimura
    • Journal Title

      J Biol Chem

      Volume: 287(24) Pages: 19927-19935

    • DOI

      10.1074/jbc.M111.339036

    • Peer Reviewed
  • [Journal Article] Structural elucidation of dextran degradation mechanism by Streptococcus mutans dextranase belonging to glycoside hydrolase family 662012

    • Author(s)
      Nobuhiro Suzuki, Young-Min Kim, Zui Fuji- moto, Mitsuru Momma, Yasuyuki Okuyama, Haruhide Mori, Kazumi Funane, Atsuo Kimura
    • Journal Title

      J Biol Chem

      Volume: 287(24) Pages: 19916-19926

    • DOI

      10.1074/jbc.M112.342444

    • Peer Reviewed
  • [Presentation] Molecular mechanism of novel enzymes forming megalosaccharides2014

    • Author(s)
      Yuya Kumagai, Juri Sadahiro, Weeranuch Lang, Young-Min Kim, Michiyo Kanegae, Masayuki Okuyama, Haruhide Mori, Kazumi Funane, Zui Fujimoto, Satoshi Ishizuka, Hiroshi Hara, Doman Kim, Atsuo Kimura
    • Organizer
      Korean Society for Microbiology and Biotechnology
    • Place of Presentation
      BEXCO(Busan、韓国)
    • Year and Date
      20140625-27
    • Invited
  • [Presentation] Gluco- nobacter oxydans由来dextran dextrinaseの直鎖イソマルトメガロ糖の効率的な合成に関わる領域の解析2014

    • Author(s)
      熊谷祐也, Lang Weeranuch,貞慶樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      日本農芸化学会2014年度大会
    • Place of Presentation
      明治大学(川崎市多摩区)
    • Year and Date
      20140327-30
  • [Presentation] Glucono- bacter oxydans由来dextran dextrinaseの直鎖イソマルトメガロ糖の合成に関わる領域2013

    • Author(s)
      熊谷祐也, Weeranuch Lang,貞慶樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Year and Date
      20131129-30
  • [Presentation] Gluconobacter oxydansが産生する2つのデキストラン合成酵素の同一性に関する解析2013

    • Author(s)
      貞慶樹里,森春英,佐分利1=,奥山正幸,木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Year and Date
      20131129-30
  • [Presentation] 糖質酵素の分子機構に関する研究2013

    • Author(s)
      木村淳夫
    • Organizer
      日本農芸化学会北海道支部講演会
    • Place of Presentation
      北海道大学農学部(札幌市北区)
    • Year and Date
      20131129-30
    • Invited
  • [Presentation] 糖質酵素の分子機構に関する研究2013

    • Author(s)
      木村淳夫
    • Organizer
      応用糖質科学会平成25年度大会
    • Place of Presentation
      鹿児島大学農学部(鹿児島市)
    • Year and Date
      20130925-27
  • [Presentation] Gluco- nobacter oxydans由来dextran dextrinaseによる直鎖イソマルトメガロ糖の酵素合成2013

    • Author(s)
      熊谷祐也,Weeranuch Lang,貞慶樹里,奥山正幸,森春英,木村淳夫
    • Organizer
      応用糖質科学会平成25年度大会
    • Place of Presentation
      鹿児島大学農学部(鹿児島市)
    • Year and Date
      20130925-27
  • [Presentation] 糖質酵素の分子機構に関する研究.新規な糖質機能の発見と応用2013

    • Author(s)
      木村淳夫
    • Organizer
      平成25年度日本応用糖質科学会北海道支部シンポジウム
    • Place of Presentation
      北農ビル(札幌市中央区)
    • Year and Date
      2013-02-03
    • Invited
  • [Book] Molecular mechanism of carbohydrate-active enzymes and their application2012

    • Author(s)
      Atsuo Kimura
    • Total Pages
      42-45
    • Publisher
      Kaiseisha Press
  • [Remarks]

    • URL

      http://www.agr.hokudai.ac.jp/rfoa/abs/abs2-3.html

  • [Remarks] 奥山正幸、木村淳夫:平成24年度サイエンス・ートナーシップ・プロジェクト(SPP)事業(北海道札幌藻岩高校) アウトリーチ活動情報

  • [Remarks] 奥山正幸、木村淳夫:平成25年度サイエンス・ートナーシップ・プロジェクト(SPP)事業(北海道札幌藻岩高校) アウトリーチ活動情報

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Published: 2015-06-25  

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