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2013 Fiscal Year Final Research Report

Structural biology study of the ER-associated degradation machinery based on eukaryotic thermophile genomic information

Research Project

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Project/Area Number 24770102
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Structural biochemistry
Research InstitutionNagoya City University

Principal Investigator

SATOH Tadashi  名古屋市立大学, 薬学研究科(研究院), 准教授 (80532100)

Project Period (FY) 2012-04-01 – 2014-03-31
Keywords好熱性真核生物 / 立体構造解析 / PDI / グルコシダーゼ
Research Abstract

In this study, we aimed to understand the molecular recognition and operating mechanisms of quality control machineries responsible for the glycoprotein fate determination (folding, transport, and degradation) in the endoplasmic reticulum. Our distinctive approach includes application of the genome information of eukaryotic thermophiles that can grow at high temperature (about 60 degrees Celsius). Using X-ray crystallography, we successfully determined the first crystal structures of protein disulfide isomerase (PDI) catalyzing disulfide bond formation and isomerization, and the catalytic domain of glycoprotein processing enzyme glucosidase II.

  • Research Products

    (17 results)

All 2014 2013 2012

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (12 results)

  • [Journal Article] Structural basis for proteasome formation controlled by an assembly chaperone Nas22014

    • Author(s)
      T. Satoh, Y. Saeki, T. Hiromoto, Y.-H. Wang, Y. Uekusa, H. Yagi, H. Yoshihara, M. Yagi-Utsumi, T. Mizushima, K. Tanaka, and K. Kato
    • Journal Title

      Structure

      Volume: (in press)

    • DOI

      10.1016/j.str.2014.02.014

    • Peer Reviewed
  • [Journal Article] ATPase activity and ATP-dependent conformational change in the co-chaperone HSP70/HSP90-organizing protein (HOP)2014

    • Author(s)
      S. Yamamoto, GP. Subedi, S. Hanashima, T. Satoh, M. Otaka, H. Wakui, K. Sawada, S. Yokota, Y. Yamaguchi, H. Kubota, H. Itoh
    • Journal Title

      J. Biol. Chem.

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Structural basis for disparate sugar-binding specificities in the homologous cargo receptors ERGIC-53 and VIP362014

    • Author(s)
      T. Satoh, K. Suzuki, T. Yamaguchi, K. Kato
    • Journal Title

      PLoS ONE

      Volume: 9 Pages: e87963

    • DOI

      10.1371/journal.pone.0087963

    • Peer Reviewed
  • [Journal Article] Recognition of bisecting N-acetylglucosamine : structural basis for asymmetric interaction with the mouse lectin dendritic cell inhibitory receptor 22013

    • Author(s)
      M. Nagae, K. Yamanaka, S. Hanashima, A. Ikeda, K. Morita-Matsumoto, T. Satoh, N. Matsumoto, K. Yamamoto, Y. Yamaguchi
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Pages: 33598-33610

    • DOI

      10.1074/jbc.M113.513572

    • Peer Reviewed
  • [Journal Article] An archaeal homolog of proteasome assembly factor functions as a proteasome activator2013

    • Author(s)
      K. Kumoi, T. Satoh, K. Murata, T. Hiromoto, T. Mizushima, Y. Kamiya, M. Noda, S. Uchiyama, H. Yagi, and K. Kato
    • Journal Title

      PLoS ONE

      Volume: 8 Pages: e60294

    • DOI

      10.1371/journal.pone.0060294

    • Peer Reviewed
  • [Presentation] 小胞体糖タンパク質フォールディング装置を構成するタンパク質群の構造2014

    • Author(s)
      佐藤匡史,年森隆泰,Tong Zhu,村田和義,山口拓実,矢木真穂,加藤晃一
    • Organizer
      生物学研究日本薬学会134年会
    • Place of Presentation
      熊本
    • Year and Date
      2014-03-28
  • [Presentation] Structural-architecture of the ER glycoprotein folding sensor UDP-glucose : glycoprotein glucosyltransferase (UGGT)2014

    • Author(s)
      T. Zhu, T. Satoh, K. Murata, H. Kamikubo, T. Toshimori, T. Yamaguchi, M. Yagi-Utsumi, and K. Kato
    • Organizer
      2013年度生物物理中部支部会
    • Place of Presentation
      岡崎
    • Year and Date
      2014-03-06
  • [Presentation] 小胞体品質管理に関わるグルコシダーゼIIの基質認識機構の構造基盤2014

    • Author(s)
      年森隆泰,佐藤匡史,Tong Zhu,加藤晃一
    • Organizer
      2013年度生物物理中部支部会
    • Place of Presentation
      岡崎
    • Year and Date
      2014-03-06
  • [Presentation] プロテインジスルフィドイソメラーゼの機能発現におけるミクロ‐マクロ相関の探査2014

    • Author(s)
      稲垣宏弥,植草義徳,神谷由紀子,伊藤暁,奥村久士,佐藤匡史,加藤晃一
    • Organizer
      2013年度生物物理中部支部会
    • Place of Presentation
      岡崎
    • Year and Date
      2014-03-06
  • [Presentation] The structural biology study on ER folding sensor UDP-glucose : glycoprotein glucosyltransferase (UGGT)2013

    • Author(s)
      T. Zhu, K. Murata, T. Toshimori, T. Yamaguchi, M. Yagi-Utsumi, T. Satoh, and K. Kato
    • Organizer
      Yonsei-IMS Seminars on Biomolecular Sciences : Protein Structure and Diseases
    • Place of Presentation
      Busan, Korea
    • Year and Date
      2013-12-16
  • [Presentation] Redox-dependent conformational changes of the substrate-binding region of protein disulfide isomerase2013

    • Author(s)
      K. Inagaki, Y. Uekusa, Y. Kamiya, S. Itoh, H. Okumura, T. Satoh, and K. Kato
    • Organizer
      山田研究会・統合バイオサイエンスシンポジウム
    • Place of Presentation
      伊良湖
    • Year and Date
      2013-11-20
  • [Presentation] Overall structure of ER folding sensor UDP-glucose : glycoprotein glucosyltransferase revealed by EM tomography2013

    • Author(s)
      T. Zhu, K. Murata, T. Toshimori, T. Yamaguchi, M. Yagi-Utsumi, T. Satoh, and K. Kato
    • Organizer
      山田研究会・統合バイオサイエンスシンポジウム
    • Place of Presentation
      伊良湖
    • Year and Date
      2013-11-20
  • [Presentation] EM tomography analysis of ER folding sensor enzyme UDP-glucose : glycoprotein glucosyltransferase2013

    • Author(s)
      T. Zhu, K. Murata, T. Toshimori, T. Yamaguchi, M. Yagi-Utsumi, T. Satoh, and K. Kato
    • Organizer
      平成25年度生理学研究所研究会「電子顕微鏡機能イメージングの医学・生物学への応用」
    • Place of Presentation
      岡崎
    • Year and Date
      2013-11-13
  • [Presentation] Bacterial expression and EM analysis of UDP-glucose glycosyltransferase from a thermophilic fungus2013

    • Author(s)
      T. Zhu, K. Murata, T. Toshimori, M. Yagi-Utsumi, T. Satoh, and K. Kato
    • Organizer
      糖鎖科学中部拠点第11回若手の力フォーラム
    • Place of Presentation
      名古屋
    • Year and Date
      2013-09-09
  • [Presentation] Structural basis underlying the redox-dependent domain rearrangement of the substrate-binding region of protein disulfide isomerase2013

    • Author(s)
      K. Inagaki, Y. Uekusa, Y. Kamiya, T. Satoh, and K. Kato
    • Organizer
      7th International Conference on Structural Genomics (ICSG2013-SLS)
    • Place of Presentation
      札幌
    • Year and Date
      2013-07-30
  • [Presentation] Redox-dependent conformational dynamics of protein disulfide isomerase coupled with exposure of its substrate binding region2012

    • Author(s)
      K. Inagaki, Y. Uekusa, Y. Kamiya, T. Satoh, and K. Kato
    • Organizer
      The 6th International Symposium "Molecular Science of Fluctuations toward Biological Functions
    • Place of Presentation
      京都
    • Year and Date
      2012-12-06
  • [Presentation] Molecular mechanism of redox-dependent domain rearrangement of the substrate-binding region of protein disulfide isomerase2012

    • Author(s)
      K. Inagaki, Y. Uekusa, Y. Kamiya, T. Satoh, and K. Kato
    • Organizer
      第50回生物物理学会年会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-09-22

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Published: 2015-06-25  

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