2016 Fiscal Year Final Research Report
Development of NGS Data Analysis Softwares Considering the Data Profile of Each Platform
| Project/Area Number |
26430199
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| Research Category |
Grant-in-Aid for Scientific Research (C)
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| Allocation Type | Multi-year Fund |
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| Section | 一般 |
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| Research Field |
System genome science
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| Research Institution | Maebashi Institute of Technology |
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Principal Investigator |
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| Project Period (FY) |
2014-04-01 – 2017-03-31
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| Keywords | 次世代シーケンサー / イルミナ / Gef-seq / 相同組換変異解析 / 転写因子 / 解析プログラム開発 / エラープロファイル / ゲノムアセンブル |
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| Outline of Final Research Achievements |
I have been developing a mapping program "maps" suite for next generation sequencing. I was able to achieve the following accomplishment during the 3 years period. (1) I have contributed the establishment of Gef-seq (Genome footprint sequence) analysis method, which is an improved method of ChIP-seq analysis, by preparing the computational analysis pipeline. (2) I continued the error-profile analysis of Illumina Next generation sequencer. (3) I have contributed the analysis of homologous/non-homologous rearrangements occuring in a part of organera genomes. (4) I contributed a comparative genome analysis of several yeast strains by genome assembling. For (1), we published a apaper and made our program public, and preparing another manuscript to describe the protocol. For (2), I made a couple of presentations. For (3) and (4), we are preparing for a publication.
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| Free Research Field |
生命情報学
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