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1990 Fiscal Year Final Research Report Summary

Energy Metabolism of Archaeo-Bacteria

Research Project

Project/Area Number 63044047
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionTokyo Institute of Technology

Principal Investigator

OSHIMA Tairo  Professor, Tokyo Institute of Technology, Departmemt of Life Science, 生命理工学部, 教授 (60167301)

Co-Investigator(Kenkyū-buntansha) ALLISON S. W.  Professor, University of California, San Diego, Departmemt of Biochemistry, 生物化学科・サンジエゴ校, 教授
SCHAFER G.  Professor, Medical University of Lubeck, Departmemt of Biochemistry, 医学部, 教授
OHNISHI T.  Associate Professor, University of Philadelphia, School of Medicine, 生物化学・生物物理学科, 準教授
HOCHSTEIN L.  Branch Chief, NASA Ames Research Center, Exobiology Division, エームス研究センター, 主任研究員
FRIEDMAN S. M.  Professor, New York City University - Hunter College, Dept. of Biological Scienc, 生物学部・ハンター校, 教授
AZZI A.  Professor, Bern University, Departmemt of Biochemistry, 医学部, 教授
北川 禎三  国立分子科学研究所, 室長 (40029955)
曽根 〓史  自治医科大学, 医学部, 助教授 (20049034)
YAMANAKA T.  Professor, Tokyo Institute of Technology, Department of Life Science, 生命理工学部, 教授 (40028113)
吉田 賢右  東京工業大学, 生命理工学部, 教授 (90049073)
SONE H.  Associate Professor, Jichi Medical School, Department of Biochemistry
KITAGAWA T.  Chief, National Institute for Molecular Sciences
YOSHIDA M.  Professor, Tokyo Institute of Technology, Department of Life Science
Project Period (FY) 1988 – 1990
KeywordsATPases / Early biochemical evolution of life / Electron transport system / Cytochromes / Gene cloning and base sequences / Sequence homology
Research Abstract

1 Membrane-bound ATPases were solubilized and purified from Archaeo-bacterial cytoplasmic membranes, and genes encoding these ATPases were cloned and sequenced. It has been revealed that ATPases from vacuolar membranes in eukaryote cells resemble the Archaeo-bacterial ATPases in respect to inhibitor sensitivity, immunochemical reactivity, and sequence homology, and that these ATPases can be classified into a different family from F_1-ATPase of eubacteria and mitochondria.. Based on these observations. Archaeo-bacterial origin of vacuolar membranes has been proposed.
2 Terminal oxidases were solubilized from cytoplasmic membranes of an acidothermophilic archaebacteria, Sulfolobus acidocaldarius. Two heme a containing cytochromes were purified ; one is cytochrome aa_3 and oxidized quinones. The other has cytochrome c oxidase activity, but since cytochrome c is not present in either the cytoplasm or the membrane of the Archaeo-bacterial, the real substrate for this cytochrome remains to be solved in the future studies. Based on these observations, the presence of two independent electron transport chins in the Archaeo-bacterial membranes has been proposed.
3 An Archaeo-bacterial ferredoxine was purified from Sulfolobus acidocaldarius and crystallized. A preliminary study has been made on the crystallographic analysis of the iron-sulfur protein. Pyrophosphatase of the same microorganism was also purified and its enzymatic properties were investigated.

  • Research Products

    (81 results)

All Other

All Publications (81 results)

  • [Publications] X.Xu: "Nucleotide Sequence of the Gene Encoding NADH Dehydrogenase from an Alkalophile,Bacillus sp.strain YNー1." J.Biochem.(1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 曽根 〓史: "細菌の呼吸鎖複合体におけるシトクロムの役割とプロトン輸送" 蛋白質核酸酵素. 36. 44-59 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Nakagawa: "Identification of the longーlived L' species of bacteriorhodopsin to the N intermediate by Raman / absorption quasiーsimultaneous measurements." J.Mol.Struct.242. 221-234 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Kakinuma: "Biosynthetic Mechanism of snー2,3ーdiーOーphytanylglycerol,Core Membrane Lipid of the Archaebacterium Halobacterium halobium." J.Am.Chem.Soc.112. 2740-2745 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Yamagishi: "Circular chromosomal DNA in the sulfurーdependent archaebacterium Sulfolobus acidocaldarius." Nucleic Acids Res.18. 1133-1136 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Kakinuma: "The stereochemical fate of glycerol during the biosynthesis of membrane lipids in thermoacidophilic archaebacteria Sulfolobus acidocaldarius." J.Chem.Soc.Chem.Commun.1990. 925-927 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] J.Konishi: "Archaebacterial ATPases:relationships to other ion translocating ATPase families as assessed by immunological crossーreactivity." J. Biochem.108. 554-559 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Denda: "Structure of an ATPase operon of an acidothermophilic Archaebacterium,Sulforobus acidocaldarius." J.Biol.Chem.265. 21509-21513 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Yokoyama: "Thermus thermophilus membrane associated ATPase,indication of a eubacterial Vーtype ATPase." J.Biol.Chem.265. 21946-21950 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] I.Yumoto: "Purification and characterization of catalase from a facultative alkalophilic Bacillus." J.Biochem.108. 583-587 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Mukai: "The methanolーoxidising system of Methylobacterium extorquens AM1 reconstituted with purified constituents." J.Biochem.107. 714-717 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Ishizuka: "Nucleotide Sequence of the Gene Coding for Four Subunits of Cytochrome c Oxidase from the Thermophilic Bacterium PS3." J.Biochem.108. 866-873 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Sone: "Respirationーdriven proton pump.“Bacterial Energetics"" The Bacteria. 12. 1-32 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Sone: "A fourth subunit is present in cytochrome c oxidase from the thermophilic bacterium PS3." FEBS Lett.262. 249-252 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Sone: "A cytochrome oーtype oxidase of the thermophilic bacterium PS3 grown under airーlimited conditions." J.Biochem.107. 597-602 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Ogura: "Observation of the Fe^<II>ーO_2 stretching Raman band for compund A of cytochrome oxidase at room temperature." J.Am.Chem.Soc.112. 5630-5631 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Ogura: "Observation of the Fe^<4+>=O stretching Raman band for cytochrome oxidase compound B at ambient temperature." J.Biol.Chem.265. 14721-14723 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Mizutani: "Resonance Raman pursuit of the change from Fe^<II>ーO_2 to Fe^<III>ーOH via Fe^<IV>=O in autoxidation of ferrous ironーporphyrin." J.Am.Chem.Soc.112. 6809-6814 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Wakagi: "A novel Aーtype terminal oxidase from Sulfolobus acidocaldarius with cytochrome C oxidase activity." Biochem.Biophys.Res.Commun.165. 1110-1114 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] S.M.Friedman: "Polyamines of SulfurーDependent Archaebacteria and Their Role in Protein Synthesis." J.Biochem.105. 1030-1033 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Denda: "A Gene Encoding the Proteolipid Subunit of Sulfolobus acidocaldarius ATPase Complex." J.Biol.Chem.264. 7119-7121 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] J.P.Gogarten: "The Evolution of the Vaculoar H^+ーATPase:Implications for the Origin of Eukaryotes." Proc.Natl.Acad.Sci.U.S.A.86. 6661-6665 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.Sato: "Thiobacillus ferrooxidans cytochrome cー552:Purification and some of its molecular features." Biochim.Biophys.Acta.976. 129-134 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Kurokawa: "Nitrobacter winogradskyi cytochrome bー559:A nonhaem ironcontaining cytochrome related to bacterioferritin." Biochim.Biophys.Acta.976. 135-139 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Kai: "Cytochrome oxidase of an acidophilic ironーoxidizing bacterium,Thiobacillus ferrooxidans,functions at pH 3.5." Biochim.Biophys.Res.Commun.160. 839-843 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Numata: "Some properties of Nitrosomonas europaea cytochrome c oxidase (aa_3ーtype) which lacks Cu_a." J.Biochem.105. 245-248 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Sone: "Cytochrome cー551 from the thermophilic bacterium PS3 grown under airーlimited conditions." Biochim.Biophys.Acta.977. 329-334 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Nakagawa: "Transient resonance Raman spectra of neutral and alkaline bacteriorhodopsin photointermediates by using doubleーbeam apparatus:Presence of very fast decaying M_<412>." Biochemistry. 28. 1347-1352 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Nakagawa: "Origin of Raman spectral difference between the spinningーcell and flowーcell measurements for bacteriorhodopsin photointermediates." J.Raman Spectrosc.20. 303-305 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] A.L.Verma: "SERR Evidence for enzymic reduction of cytochrome c_3 adsorbed on Ag colloids." Chem.Phys.Lett.159. 189-192 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Ogura: "Raman / absorption simultaneous measurements for cytochrome oxidase compound A at room temperature with a novel flow apparatus." Biochemistry. 28. 8022-8027 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Denda: "The Membraneーassociated ATPase as Assessed from Sulfolobus acidocaldarius Is Distantly Related to F_1ーATPase as Assessed from the Primary Structure of Its αーSubunit." J.Biol.Chem.263. 6012-6015 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Denda: "Molecular Cloning of the βーSubunit of a Possible NonーF_0F_1 Type ATP Synthase from the Acidothermophilic Archaebacterium, Sulfolobus acidocaldarius." J.Biol.Chem.263. 17251-17254 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamanaka: "The variety of molecular properties of bacterial cytochromes containing heme a." Ann.N.T.Acad.Sci.550. 39-46 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamanaka: "The nitrite oxidizing system of Nitrobacter winogradskyi." FEMS Microbiol.Rev.54. 259-270 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Fukumori: "Fe(II)ーoxidizing enzyme purified from Thiobacillus ferrooxidans." FEMS Microbiol.Lett.50. 169-172 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Yamazaki: "Catalytic properties of cytochrome c oxidase purified from Nitosomonas europaea." J.Biochem.103. 499-503 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y.Fukumori: "Purification and some properties of cytochrome bー560 from Nitorosomonas europaea." Plant Cell Physiol.29. 1077-1079 (1988)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Wakagi: "Bioenergetics of Sulfolobus,a thermoacidophilic archaebacterium;Prebiological Self Organization of Matter" C.Ponnaperuma and F.R.Eirich (A.Deepak Publishing,New York), 285-294 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Denda: "Molecule and gene of Sulfolobus acidocaldarius.Bioenegetics;Molecular Biology,Biochemistry and Pathology." C.H.Kim and T.Ozawa (Prenum Press,N Y), 341-351 (1990)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] T.Wakagi: "Microbiology of Extreme Environments and its Potential for Biotechnology" M.S.DaCosta,J.C.Duarte,and R.A.D.Williams (Elsevier Applied Science,Amsterdam), 408 (1989)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] X. Xu: "Nucleotide Sequence of the Gene Encoding NADH Dehydrogenase from an Alkalophile, Bacillus sp. strain YN-l." J. Biochem.(1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Nakagawa: "Identification of the long-lived L' species of bacteriorhodopsin to the N intermediate by Raman / absorption quasi-simultaneous measurements." J. Mol. Struct.242. 221-234 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Kakinuma: "Biosynthetic Mechanism of sn-2, 3-di-Dmicron-phytanylglycerol, Core Membrane Lipid of the Archaeo-bacteria Halobacterium halobium." J. Am. Chem. Soc.112. 2740-2745 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. Yamagishi: "Circular chromosomal DNA in the sulfur-dependent archaebacterium Sulfolobus acidocaldarius." Nucleic Acids Res.18. 1133-1136 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Kakinuma: "The stereochemical fate of glycerol during the biosynthesis of membrane lipids in thermoacidophilic archaebacteria Sulfolobus acidocaldarius." J. Chem. Soc. Chem. Commun.1990. 925-927 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J. Konishi: "Archaeo-bacteria ATPases : relationships to other ion translocating ATPase families as assessed by immunological cross-reactivity." J. Biochem.108. 554-559 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Denda: "Structure of an ATPase operon of an acidothermophilic Archaeo-bacteria. Sulforobus acidocaldarius." J. Biol. Chem.265. 21509-21513 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Yokoyama: "Thermus thermophilus membrane associated ATPase, indication of a eubacterial V-type ATPase." J. Biol. Chem.265. 21946-21950 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] I. Yumoto: "Purification and characterization of catalase from a facultative alkalophilic Bacillus." J. Biochem.108. 583-587 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Mukai: "The methanol-oxidising system of Methylobacterium extorquens AM1 reconstituted with purified constituents." J. Biochem.107. 714-717 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Ishizuka: "Nucleotide Sequence of the Gene Coding for Four Subunits of Cytochrome cOxidase from the Thermophilic Bacterium PS3." J. Biochem.108. 866-873 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Sone: "Respiration-driven proton pump. "Bacterial Energetics"" The Bacteria. 12. 1-32 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Sone: "A fourth subunit is present in cytochrome c oxidase from the thermophilic bacterium PS3." FEBS Lett.262. 249-252 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Sone: "A cytochrome o-type oxidase of the thermophilic bacterium PS3 grown under air-limited conditions." J. Biochem.107. 597-602 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Ogura: "Observation of the Fe^<II> -0_2 stretching Raman band for compound A of cytochrome oxidase at room temperature." J. Am. Chem. Soc.112. 5630-5631 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Ogura: "Observation of the Fe^<4+>=0 stretching Raman band for cytochrome oxidase compound B at ambient temperature." J. Biol. Chem.265. 14721-14723 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Mizutani: "Resonance Raman pursuit of the change from Fe^<II>-O_2 to Fe^<III> -OH via Fe^<IV> =O in autoxidation of ferrous iron-porphyrin." J. Am. Chem. Soc.112. 6809-6814 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Wakagi: "A novel A-type terminal oxidase from Sulfolobus acidocaldarius with cytochrome C oxidase activity." Biochem. Biophys. Res. Commun.165. 1110-1114 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] S. M. Friedman: "Polyamines of Sulfur-Dependent Archaeo-bacteria and Their Role in Protein Synthesis." J. Biochem.105. 1030-1033 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Denda: "A Gene Encoding the Proteolipid Subunit of Sulfolobus acidocaldarius ATPase Complex." J. Biol. Chem.264. 7119-7121 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J. P. Gogarten: "The Evolution of the Vaculoar H^+ - ATPase : Implications for the Origin of Eukaryotes." Proc. Natl. Acad. Sci. U. S. A.86. 6661-6665 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. Sato: "Thiobacillus ferro-oxidant cytochrome c-552 : Purification and some of its molecular features." Biochim. Biophys. Acta.976. 129-134 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Kurokawa: "Nitrobacter winogradskyi cytochrome b-559 : A nonhaem iron- containing cytochrome related to bacterioferritin." Biochim. Biophys. Acta.976. 135-139 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Kai: "Cytochrome oxidase of an acidophilic iron-oxidizing bacterium, Thiobacillus ferro-oxidant, functions at pH 3.5." Biochim. Biophys. Res. Commun.160. 839-843 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Numata: "Some properties of Nitrosomonas europaea cytochrome c oxisase ( aa_3 -type ) which lacks Cu_A." J. Biochem.105. 245-248 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Sone: "Cytochrome c-551 from the thermophilic bacterium PS3 grown under air-limited conditions." Biochim. Biophys. Acta.977. 329-334 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Nakagawa: "Transient resonance Raman spectra of neutral and alkaline bacteriorhodopsin photo intermediates by using double-beam apparatus : Presence of very fast decaying M_<412>" Biochemistry. 28. 1347-1352 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Nakagawa: "Origin of Raman spectral difference between the spinning-cell and flow-cell measurements for bacteriorhodopsin photo intermediates." J. Raman Spectrosc.20. 303-305 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. L. Verma: "SERR Evidence for enzymic reduction of cytochrome c_3 adsorbed on Ag colloids." Chem. Phys. Lett.159. 189-192 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Ogura: "Raman / absorption simultaneous measurements for cytochrome oxidase compound LAMBDA at room temperature with a novel flow apparatus." Biochemistry. 28. 8022-8027 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Denda: "The Membrane-associated ATPase as Assessed from Sulfolobus acidocaldarius Is Distantly Related to F_1 -ATPase as Assessed from the Primary Structure of Its alpha-Subunit." J. Biol. Chem.263. 6012-6015 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Denda: "Molecular Cloning of the beta-Subunit of a Possible Non-F_0 F_1 Type ATP Synthase from the Acidothermophilic Archaebacterium. Sulfolobus acidocaldarius." J. Biol. Chem.263. 17251-17254 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Yamanaka: "The variety of molecular properties of bacterial cytochromes containing heme a." Ann. N. Y. Acad. Sci.550. 39-46 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Yamanaka: "The nitrite oxidizing system of Nitrobacter winogradskyi." FEMS Microbiol. Rev.54. 259-270 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Fukumori: "Fe (II)-oxidizing enzyme purified from Thiobacillus ferrooxidans." FEMS Microbiol. Lett.50. 169-172 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Yamazaki: "Catalytic properties of cytochrome c oxidase purified from Nitosomonas europaea." J. Biochem.103. 499-503 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Fukumori: "Purification and some properties of cytochrome b-560 from Nitorosomonas europaea." Plant Cell Physiol.29. 1077-1079 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Wakagi: C. Ponnaperuma and F. R. Eirich (A. Deepak Publishing, New York). Bioenergetics of Sulfolobus, a thermoacidophilic Archaeo-bacteria ; Prebiological Self Organization of Matter., 285-294 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Denda: C. H. Kim and T. Ozawa (Prenum Press, N Y). Molecule and gene of Sulfolobus acidocaldarius. Bioenegetics ; Molecular Biology. Biochemistry and Pathology., 341-351 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] T. Wakagi: M. S. DaCosta, J. C. Duarte, and R . A . D. Williams (Elsevier Applied Science, Amsterdam). Microbiology of Extreme Environments and its Potential for Biotechnology, 408 (1989)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1993-08-12  

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