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1991 Fiscal Year Final Research Report Summary

Studies on Mechanisms of DNA Rearrangements in Mammalian Cells.

Research Project

Project/Area Number 63440086
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field 分子遺伝学・分子生理学
Research InstitutionThe Institute of Medical Science, The University of Tokyo

Principal Investigator

IKEDA Hideo  Univ. Tokyo, Inst. Med. Sci. Professor, 医科学研究所, 教授 (10012775)

Co-Investigator(Kenkyū-buntansha) MASUDA Akiko  Univ. Tokyo, Inst. Med. Sci. Research Associate, 医科学研究所, 教務職員 (90134626)
KAWASAKI Ichiro  Univ. Tokyo, Inst. Med. Sci. Research Associate, 医科学研究所, 助手 (50204706)
KATO Jun-ichi  Univ. Tokyo, Inst. Med. Sci. Research Associate, 医科学研究所, 助手 (10194820)
KOBAYASHI Ichizo  Univ. Tokyo, Inst. Med, Sci. Associate Professor, 医科学研究所, 助教授 (30126057)
Project Period (FY) 1988 – 1991
KeywordsHomologous recombination / Illegitimate recombination / Schizosaccharomyces pombe / DST2 homologue / MItotic cell growth / Mammalian cell / DNA topoisomerase II / Strand exchange protein
Research Abstract

(1) Molecular analysis of genes for homologous recombination and cell growth from fission yeast Schizosaccharomices pombe. We have isolated S. pombe genes for homologous to budding yeast S. cereviseae DST2 gene, whose product have the activity of DNA strand exchange. S. pombe genomic library was screened with a probe from S. cereviceae DST2 and nucleotide sequences of positive clones were determined. Approximately 3 kb open leading frame which encodes 991 amino acids was found in the resulted clones and is called dhp1 (DST2 homologue of S. p-ombe). The product had the activity of DNA strand exchange and was essential for the mitotic cell growth. Furthermore we also isolated another homologue of the DST2, which is called dhp2. In contrast to the dhpl, the dhp2 is not essential for mitotic cell growth. The DST2 homologues will be used to analyze the mechanism of homologous recombination in S. pombe.
(2) Cloning and analysis of gene (s) for homologous recombination in mammalian cells. The … More result of amino acid sequence of the dhpl gene was used to isolate human CDNA for homologous recombination and we succeeded it. We are analyzing the structure and function of this human CDNA and its product. We are also trying to isolate mouse genes for homologous recombination and to construct mutant mice which are defective in the gene for homologous recombination.
(3) In vivo and vitro study of homologous recombination of SV40-derived shuttle vector DNAs in mammalian cells. SV40-derived shuttle vectors which contain direct repeats in the both sides of the galK^+ marker were incubated with an extract from HeLa cytosol in the presence of SV40 large T antigen. The vector DNAs were assayed for galK deletion formation using E. coligal^-. Using this assay system, the formation of galk deletion was detected at a high frequency and is dependent on the presence of both SV40 origin of DNA replication and SV40 large T antigen. This in vitro system will become a powerful tool for elucidating biochemical aspects of homologous recombination in mammalian cells.
(4) Role of DNA topoisomerases on illeg, inmate recombination. We found that calf thymus DNA topoisomerase II mediates recombination between two phage lambda DNA molecules in an in vitro system. The recombinant molecules contain duplications or deletions, and most crossovers take place between nonhomologous sequences of lambda DNA, as judged by the sequences of recombination junctions. Therefore, the recombination mediated by the calf thymus DNA topoisomerase II is an illegitimate recombination that is similar to recombination mediated by Escherichia coli DNA gyrase or phage T4 DNA topoiscimerase, which we have previously indicated. Furthermore, we have also analyzed the effects of topoisomerase inhibitors in mammalian cultured cells. The DNA topoisomerase II inhibitor VM26 stimulated deletion formation in SV40-derived DNA in mon]Cey cells, implicating that topoisomerase II participates in deletion formation in mammalian cells. 10. KEY WORDS Less

  • Research Products

    (37 results)

All Other

All Publications (37 results)

  • [Publications] Y.S.Bae,M.Chiba,M.Ohira and H.Ikeda.: "A shuttle vector for analysis of illegitimate recombination in mammalian cells: Effects of DNA topoisomerase inhibitors on deletion frequency." Gene. 10. 285-289 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Ohira,Y.-S.Bae,and H.Ikeda.: "A new type of insertion mutation in monkey cells: insertion accompanied by long targe site duplication." Mol.Gen.Genet.229. 325-333 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] M.Kumagai and H.Ikeda: "Molecular Analysis of the recombination junctions of λbio transducing phages." Mol.Gen.Genet.230. 60-64 (1991)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] J.Watanabe,K.Nakata,H.Nashimoto,and H.Ikeda: "Cloning and characterization of a repetitive sequence from Pneumocystis carinii." Rarasitol.Res.(1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] H.Ikeda,M.Kumagai,T.Yamashita, and M.Honda: "Involvement of type II DNA topoisomerases in illegitimate recombination in Escherichia coli: Analyses of the partial diploid of phage T4 and the specialized transducing particles of phage λ." DNA topoisomerases in chemotherapy (Ed.T.Ando),CRC press,Inc.Boca Raton, USA. (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] J,Kato and H.Ikeda: "Purification and characterization of DNA topoisomerase IV in Escherichia coil." DNA topoisomerases in chemotherapy (Ed.T.Ando),CRC press,Inc.Boca Raton, USA. (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] I,Kobayashi: "Mechanisms for gene conversion and homologous recombination:The double-strand break repair model and the successive half crossing-over model." Adv.Biophysics. 28. (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] K.Yamamoto,K.Kusano,N.Takahashi,H.Yoshikura,and I.Kobayashi.: "Gene conversion in Escherichia coli RecF patyway.A successive half crossing-over model." Mol.Gen.Genet.(1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] N.Takahashi,K.Yamamoto,Y.Kitamura,S.Luo,H.Yoshikura,and I.Kobayashi: "Non-conservative recombination in E.coli." Proc.Natl.Acad.Sci.USA.(1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Y-S. Bae, I. kawasaki, H. Ikeda and L. F. Liu.: "Illegitimate recombination mediated by calf thymus DNA topoisomerase II in vitro." Proc. Natl. Acad. Sci. USA. 85. 2076-2080 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. M. Saing, H. Orii, Y. Tanaka, K. Yanagisawa, A. Miura and H. Ikeda.: "Formation of deletion in Escherichia coli between direct repeats located in the long inverted repeats of a cellular slime mold plasmid : Participation of DNA gyrase." Mol. Gen. Genet.214. 1-5 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Kawakami, Y. H. Jonsson, G. R. Bjork, H. Ikeda and Y. Nakamura.: "Chromosomal location and structure of the operon encoding peptid-chain-release factor 2 of Escherichia coli" Proc. Natl. Acad. Sci. USA. 85. 5620-5624 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] I. Kobayashi and N. Takahashi.: "Double-stranded gap repair of DNA by gene conversion in Escherichia coli." Genetics. 119. 751-757 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Yamamoto, N. Takahashi, H. Yoshikura, and I. Kobayashi.: "Homologous recombination involving a large heterology in escherichia coli." Genetics. 119. 759-769 (1988)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Tomono, M. Shiozaki and H. Ikeda.: "Formation of lambda transducing phage In Vitro : Involvement of DNA Gyrase." J. Biochem.105. 423-428 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] I. Kawasaki, S. Sugano and H. Ikeda.: "Calf thymushistone H1 is a recombinase that catalyzes ATP-independent DNA strand transfer." Proc. Natl. Acad. Sci. USA. 86. 5281-5285 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Chiba, H. Shimizu, A. Fujimoto, H. Nashimoto and H. Ikeda.: "Common sites for recombination and cleavage mediated by bacteriophage T4 DNA topoisomerase in Vitro." J. Biol. Chem.264. 12785-12790 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Kawakami, S. Naito, N. Inoue, Y. Nakamura, H. Ikeda and H. Ucida.: "Isolation and characterization of herC, a mutation of Escherichia coli affecting maintenance of ColE1." Mol. Gen. Genet.219. 333-340 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H. Ikeda.: "DNA topoisomerase-mediated recombination." DNA topology and its biological ellects. Cold Spring Harbor Laboratory, Cold Spring Habor, New York. 341-359 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] A. Masuda-Miura and H. Ikeda.: "The gyrase of Escherichia coli participates in the formation of a spontaneous deletion by recA-independent recombination in vivo." Mol. Gen. Genet.220. 345-352 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Ohashi, H. Nashimoto, H. Ikeda, and A. Tamura.: "Cloning and nucleotide sequencing of the gene (tsg56) encoding a type-specific antigen from Rickettsia tsutsugamushi." Gene. 91. 119-122 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. Hayashi, J. Watanabe, K. Nakata, M. Fukayama, and H. Ikeda.: "A Novel diagnostic method of Pneumocystis carinii : In situ hybridization of ribosomal RNA with biotinylated oligonucleotide probes." Laboratory Invest.63. 576-580 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] I. Kawasaki, N. Adachi and H. Ikeda.: "Nucleotide sequence of S. pombe inorganic pyrophosphatase." Nucleic Acid Res.18. 5888 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takahashi, N., and Kobayashi, I.: "Evidence for the double-stand break repair model of bacterio-phage lambda recombination." Proc. Natl. Acad. Sci. USA. 87. 2790-2794 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitamura, Y., Yoshikura, H., and Kobayashi, I.: "Homologous recombination in a mammalian plasmid." Mol. Gen. Genet.222. 185-191 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kato, J., Nishimura, Y., Imamura, R., Niki, H., Hiraga, S., and Suzuki, H.: "New topoisomerase essential for chromosome segregation in E. coli." Cell. 63. 393-404 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Watanabe, H., Arakawa, E., Ito, K., Kato, J., and Nakamura, A: "Genetic analysis of an invasion region by use of a Tn3-lac transposon and identification of a second positive regulator gene, invE, for cell invasion of Shigella sonnei : significant homology of InvE with ParB of plasmid P1." J. Bacteriol.172. 619-629 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ogawa, A., Kato, J., Watanabe, H., Nair, B. G., and Takeda, T.: "Cloning and nucleotide sequence of a heat-stable enterotoxin gene from Vibrio cholerae non-O1 isolated from a patient with traveler's diarrhea." Infect. Immun.58. 3325-3329 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Y. -S. Bae, M. Chiba, M. Ohira and H. Ikeda.: "A shuttlevector for analysis of illegitimate recombination in mammalian cells : Effects of DNA topoisomerase inhibitors on deletion frequency." Gene. 10. 285-289 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Ohira, Y. -S. Bae, and H. Ikeda.: "A new type of insertion mutation in monkey cells : insertion accompanied by long targe site duplication." Mol. Gen. Genet.229. 325-333 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] M. Kumagai and H. Ikeda.: "Molecular Analysis of the recombination junctions of lambdabio transducing phages." Mol. Gen. Genet.230. 60-64 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J. Watanabe, K. Nakata, H. Nashimoto, and H. Ikeda: "Cloning and characterization of a repetitive sequence from Pneumocystis carinii." Rarasitol. Res.(1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] H. Ikeda, M. Kumagai, T. Yamashita, and M. Honda: "Involvement of type II DNA topoisomerases in illegitimate recombination in Escherichia coli : Analyses of the partial diploid of phage T4 and the specialized transducing particles of phage lambda." DNA topoisomerases in chemotherapy. CRC press, Inc. Boca Raton. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] J. Kato and H. Ikeda.: "Purification and characterization of DNA topoisomerase IV in Escherichia coli." DNA topoisomerases in chemotherapy. CRC press, Inc. Boca Raton. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] I. Kobayashi.: "Mechanisms for gene conversion and homologous recombination : The double-strand break repair model and the successive half crossing-over model." Adv. Biophysics. 28. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] K. Yamamoto, K. Kusano, N. Takahashi, H. Yoshikura, and I. Kobayashi: "Gene conversion in Escherichia coli RecF patyway. A successive half crossing-over model." Mol. Gen. Genet.(1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] N. Takahashi, K. Yamamoto, Y. Kitamura, S. Luo, H. Yoshikura, and I. Kobayashi.: "Non-conservative recombination in E. coli." Proc. Natl. Acad. Sci. USA.(1992)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1993-03-16  

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