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2011 Fiscal Year Annual Research Report

量子多成分系分子理論の深化と物質デザインへの展開

Publicly Offered Research

Project AreaMaterials Design through Computics: Complex Correlation and Non-equilibrium Dynamics
Project/Area Number 23104513
Research InstitutionYokohama City University

Principal Investigator

立川 仁典  横浜市立大学, 生命ナノシステム科学研究科, 教授 (00267410)

Keywords量子多成分系分子理論 / プロトン / ミューオン / 炭素材料への水素吸着 / 生体分子クラスター
Research Abstract

申請者らが開発してきた水素原子核の量子揺らぎも含めた量子多成分系分子理論を深化させ、計算機科学との融合を含めて、物質デザインへの展開を探る。本年度は、以下に示す研究項目を実施した。
(1)量子多成分系分子理論の深化:大規模系への拡張のため、経路積分法におけるポテンシャルの評価に、半経験的分子軌道法やDFTB法を実装することで計算コストを抑えることに成功した。併せて経路積分法における並列技法への実装も行った。それらの開発により、より効率的に計算を実施することを可能とした。
(2)物質デザインへの展開:(1)で開発した大規模計算可能な手法を駆使することにより、本年度は(1)経路積分分子動力学法を用いた核酸塩基対の水素結合における量子効果の影響、および(2)多成分系分子軌道法を用いたアミノ酸分子への陽電子吸着に関する理論的解析を行った。
(1)これまでの核酸塩基対に関するab initio計算は分子軌道計算や古典的な分子動力学計算がほとんどであるが、本研究では温度効果・核の量子効果をともに考慮できる経路積分ハイブリッドモンテカルロ法を用いてWatson-Crick型の核酸塩基対の水素結合について詳細に解析した。特に、今回は三つの水素結合を持つGuanine-Cytosine pair(G-C pair)に注目したところ、中央の水素結合と両サイドの水素結合は大きく相関していることがわかった。
(2)アミノ酸分子の陽電子吸着能を明らかにすることを目的に、電子・陽電子を量子力学的粒子として取り扱うことのできる多成分分子軌道(MC-MO)法を用いて、20種類のアミノ酸分子の陽電子親和力(陽電子の束縛エネルギー,以下、PA)を系統的に解析した。その結果、陽電子結合サイトを理解するには、長距離相互作用の重要性が示唆された。また、アミノ酸分子の双極子モーメントと陽電子親和力の間には強い相関関係があることもわかった。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

量子多成分系分子理論の深化として、大規模計算が可能となったのは収穫であった。また、具体的計算結果も得られ、既に論文として報告することもできた。

Strategy for Future Research Activity

本年度も同じペースで進める予定である。

  • Research Products

    (34 results)

All 2012 2011 Other

All Journal Article (26 results) (of which Peer Reviewed: 26 results) Presentation (7 results) Remarks (1 results)

  • [Journal Article] Vibrational enhancement of positron affinities for nonpolar carbon dioxide and carbon disulfide molecules : Multi-component molecular orbital study for vibrational excited states2012

    • Author(s)
      K.Koyanagi, Y.Kita, M.Tachikawa
    • Journal Title

      Int.J.Quant.Chem.

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Temperature dependence of self-assembled molecular capsules consisting of gear-shaped amphiphile molecules with molecular dynamics simulations2012

    • Author(s)
      J.Koseki, Y.Kita, S.Hiraoka, U.Nagashima, M.Tachikawa
    • Journal Title

      Int.J.Quant.Chem.

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Bound states of positron with simple carbonyl and aldehyde species with configuration interaction multi-component molecular orbital and local vibrational approaches2012

    • Author(s)
      M.Tachikawa, Y.Kita, R.J.Buenker
    • Journal Title

      New J.Phys.

      Volume: 14 Pages: 035004(10)

    • Peer Reviewed
  • [Journal Article] Systematic theoretical investigation of positron-binding to amino acid molecules with ab initio multi-component molecular orbital approach2012

    • Author(s)
      K.Koyanagi, Y.Kita, M.Tachikawa
    • Journal Title

      Eur.Phys.J.D.

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Quantum tautomerization in porphycene and its isotopomers : Path-integral molecular dynamics simulations2012

    • Author(s)
      T.Yoshikawa, S.Sugawara, T.Takayanagi, M.Shiga, M Tachikawa
    • Journal Title

      Chem.Phys.

      Volume: 394 Pages: 46-51

    • Peer Reviewed
  • [Journal Article] Real Wave Packet and Flux Analysis Studies of the H+F_2->HF+F Reaction2012

    • Author(s)
      F.Gogtas, E.Karabulut, T.Takayanagi, T.Tanaka, R.Tutuk
    • Journal Title

      Int.J.Quantum.Chem.

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Fixed-node quantum Monte Carlo for molecule2012

    • Author(s)
      立川仁典, 北幸海
    • Journal Title

      巨大分子系の計算化学

      Volume: (in Japanese) Pages: 34-38

    • Peer Reviewed
  • [Journal Article] 陽電子束縛化合物の第一原理計算2012

    • Author(s)
      立川仁典, 北幸海
    • Journal Title

      日本物理学会誌

      Volume: 67(in Japanese) Pages: 33-36

    • Peer Reviewed
  • [Journal Article] Analytical optimization of orbital exponents in Gaussian-type functions for molecular systems based on MCSCF and MP2 levels of fully variational molecular orbital method2011

    • Author(s)
      N.Shimizu, T.Ishimoto, M.Tachikawa
    • Journal Title

      Theor.Chem.Acc.

      Volume: 130 Pages: 679-685

    • Peer Reviewed
  • [Journal Article] Role of CH-pi interaction energy in self-assembled gear-shaped amphiphile molecules : Correlated ab initio molecular orbital and density functional theory study2011

    • Author(s)
      J.Koseki, Y.Kita, S.Hiraoka, U.Nagashima, M.Tachikawa
    • Journal Title

      Theor.Chem.Acc.

      Volume: 130 Pages: 1055-1059

    • Peer Reviewed
  • [Journal Article] Quantum Proton Transfer in Hydrated Sulfuric Acid Clusters : A Perspective from Semiempirical Path Integral Simulations2011

    • Author(s)
      S.Sugawara, T.Yoshikawa, T.Takayanagi, M.Shiga, M.Tachikawa
    • Journal Title

      J.Phys.Chem.A.

      Volume: 115 Pages: 11486-11494

    • Peer Reviewed
  • [Journal Article] Isotope effect of proton and deuteron adsorption site on Zeolite-Templated carbon using path integral molecular dynamics2011

    • Author(s)
      K.Suzuki, M.Tachikawa, H.Ogawa, S.Ittisanronnachai, H.Nishihara, T.Kyotani, U.Nagashima
    • Journal Title

      Theor.Chem.Acc.

      Volume: 130 Pages: 1039-1042

    • Peer Reviewed
  • [Journal Article] Nuclear quantum effect on the hydrogen-bonded structure of guanine-cytosine pair2011

    • Author(s)
      M.Daido, A.Koizumi, M.Shiga, M.Tachikawa
    • Journal Title

      Theor.Chem.Acc.

      Volume: 130 Pages: 385-391

    • Peer Reviewed
  • [Journal Article] Ab initio quantum Monte Carlo study of the binding of a positron to alkali-metal hydrides2011

    • Author(s)
      Y.Kita, R.Maezono, M.Tachikawa, M.Towler, R.J.Needs
    • Journal Title

      J.Chem.Phys.

      Volume: 135 Pages: 054108(5)

    • Peer Reviewed
  • [Journal Article] Ab initio path integral simulation of AgOH(H_2O)2011

    • Author(s)
      A.Koizumi, K.Suzuki, M.Shiga, M.Tachikawa
    • Journal Title

      Int.J.Quant.Chem.

      Volume: 112 Pages: 136-139

    • Peer Reviewed
  • [Journal Article] Theoretical study of the reversible photoconversion mechanism in Dronpa2011

    • Author(s)
      J.Koseki, Y.Kita, U.Nagashima, M.Tachikawa
    • Journal Title

      Procedia Comput.Sci.

      Volume: 4 Pages: 251-260

    • Peer Reviewed
  • [Journal Article] Molecular dynamics simulation for irreversible feature of green fluorescent protein before and after photoactivation2011

    • Author(s)
      J.Koseki, Y.Kita, M.Tachikawa
    • Journal Title

      Chem.Lett.

      Volume: 40 Pages: 476-477

    • Peer Reviewed
  • [Journal Article] Ab initio quantum chemical study on the mechanism of exceptional behavior of lysine for ion yields in MALDI-Role of vibrational entropic contribution in thermally averaged proton affinities-2011

    • Author(s)
      M.Hatakeyama, M.Tachikawa
    • Journal Title

      J.Mass Spectrometry

      Volume: 46 Pages: 376-382

    • Peer Reviewed
  • [Journal Article] Path integral molecular dynamics for hydrogen adsorption site of zeolite-templated carbon with semi-empirical PM3 potential2011

    • Author(s)
      K.Suzuki, M.Kayanuma, M.Tachikawa, H.Ogawa, H.Nishihara, T.Kyotani, U.Nagashima
    • Journal Title

      Comp.Theor.Chem.

      Volume: 975 Pages: 128-133

    • Peer Reviewed
  • [Journal Article] Nuclear quantum effect on the dissociation energies of cationic hydrogen clusters2011

    • Author(s)
      M.Sugimoto, M.Shiga, M.Tachikawa
    • Journal Title

      Comp.Theor.Chem.

      Volume: 975 Pages: 31-37

    • Peer Reviewed
  • [Journal Article] Theoretical investigations of nuclear quantum effect on molecular magnetic properties based on multi-component density functional theory2011

    • Author(s)
      Y.Kita, M.Tachikawa
    • Journal Title

      Comp.Theor.Chem.

      Volume: 975 Pages: 9-12

    • Peer Reviewed
  • [Journal Article] A concerted mechanism between protron transfer of Zundel anion and displacement of counter cation2011

    • Author(s)
      A.Koizumi, K.Suzuki, M.Shiga, M.Tachikawa
    • Journal Title

      J.Chem.Phys.

      Volume: 134(communication) Pages: 031101(3)

    • Peer Reviewed
  • [Journal Article] Theoretical study on mechanisms of structural rearrangement and ionic dissociation in the HCl(H_2O)_4 cluster with path-integral molecular dynamics simulations2011

    • Author(s)
      S.Sugawara, T.Yoshikawa, T.Takayanagi, M.Tachikawa
    • Journal Title

      Chem.Phys.Lett.

      Volume: 501 Pages: 238-244

    • Peer Reviewed
  • [Journal Article] Bound states of positron with nitrile species with configuration interaction multi-component molecular orbital approach2011

    • Author(s)
      M.Tachikawa, Y.Kita, R.J.Buenker
    • Journal Title

      Phys.Chem.Chem.Phys.

      Volume: 13 Pages: 2701-2705

    • Peer Reviewed
  • [Journal Article] Nuclear quantum effect on hydrogen adsorption site of zeolite-templated carbon model using path integral molecular dynamics2011

    • Author(s)
      K.Suzuki, M.Kayanuma, M.Tachikawa, H.Ogawa, H.Nishihara, T.Kyotani, U.Nagashima
    • Journal Title

      J.Alloys and Compounds

      Volume: 509S Pages: S868-S871

    • Peer Reviewed
  • [Journal Article] 新しい分子物理化学の確立-ポジトロニクス(陽電子技術)にむけて2011

    • Author(s)
      立川仁典, 北幸海
    • Journal Title

      化学

      Volume: 66(最新のトピックス)(in Japanese) Pages: 68-69

    • Peer Reviewed
  • [Presentation] Bound states of positron with nitrile species with several multi-component molecular theories2012

    • Author(s)
      Masanori Tachikawa
    • Organizer
      International Workshop on Positrons in Astrophysics
    • Place of Presentation
      Murren, Switzerland
    • Year and Date
      2012-03-21
  • [Presentation] Multi component molecular theory for hydrogen bonded systems and positronic compounds2012

    • Author(s)
      Masanori Tachikawa
    • Organizer
      The 4th French-Japanese Workshop on Computational Methods in Chemistry
    • Place of Presentation
      Fukuoka, Japan(招待講演)
    • Year and Date
      2012-03-06
  • [Presentation] First-principles Calculations for Positron-attached Molecules2012

    • Author(s)
      Masanori Tachikawa
    • Organizer
      The Sixth General Meeting of ACCMS-VO
    • Place of Presentation
      Sendai, Japan(招待講演)
    • Year and Date
      2012-02-12
  • [Presentation] Multi component molecular theory for hydrogen bonded systems and positronic compounds2011

    • Author(s)
      Masanori Tachikawa
    • Organizer
      XVIth International Workshop on Quantum Systems in Chemistry and Physics (QSCP-XVI)
    • Place of Presentation
      Kanazawa, Ishikawa(招待講演)
    • Year and Date
      2011-09-14
  • [Presentation] Path Integral simulation for Hydrogen Bonded Systems : Protonic Quantum Nature and H/D Isotope Effect2011

    • Author(s)
      Masanori Tachikawa
    • Organizer
      14th Asian Chemical Congress
    • Place of Presentation
      Bangkok, Thailand(招待講演)
    • Year and Date
      2011-09-08
  • [Presentation] Multi component molecular theory for hydrogen bonded systems and positronic compounds2011

    • Author(s)
      Masanori Tachikawa
    • Organizer
      7th Congress of the International Society for Theoretical Chemical Physics (ISTCP-VII)
    • Place of Presentation
      Waseda, Tokyo
    • Year and Date
      2011-09-04
  • [Presentation] Path integral simulation for hydrogen bonded systems : Protonic quantum nature and H/D isotope effect2011

    • Author(s)
      Masanori Tachikawa
    • Organizer
      ISOTOPES2011
    • Place of Presentation
      Provence-Alpes-Cote d'Azur, FRANCE(招待講演)
    • Year and Date
      2011-06-22
  • [Remarks]

    • URL

      http://www-user.yokohama-cu.ac.jp/~tachi/

URL: 

Published: 2013-06-26  

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