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Information physics of living matters

Organizer

Project AreaInformation physics of living matters
Project/Area Number 19H05794
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionThe University of Tokyo

Principal Investigator

岡田 康志  東京大学, 大学院医学系研究科(医学部), 教授 (50272430)

Co-Investigator(Kenkyū-buntansha) 佐々 真一  京都大学, 理学研究科, 教授 (30235238)
石島 秋彦  大阪大学, 生命機能研究科, 教授 (80301216)
沙川 貴大  東京大学, 大学院工学系研究科(工学部), 教授 (60610805)
伊藤 創祐  東京大学, 大学院理学系研究科(理学部), 講師 (00771221)
小林 徹也  東京大学, 生産技術研究所, 准教授 (90513359)
澤井 哲  東京大学, 大学院総合文化研究科, 教授 (20500367)
竹内 一将  東京大学, 大学院理学系研究科(理学部), 准教授 (50622304)
川口 喬吾  国立研究開発法人理化学研究所, 開拓研究本部, 理研白眉研究チームリーダー (00787319)
青木 一洋  大学共同利用機関法人自然科学研究機構(新分野創成センター、アストロバイオロジーセンター、生命創成探究, 生命創成探究センター, 教授 (80511427)
松岡 里実  大阪大学, 生命機能研究科, 助教 (00569733)
神原 丈敏  国立研究開発法人理化学研究所, 生命機能科学研究センター, 上級研究員 (40451637)
榎 佐和子 (苙口佐和子)  東京大学, 大学院理学系研究科(理学部), 特任助教 (50467635)
池崎 圭吾  東京大学, 大学院理学系研究科(理学部), 助教 (10722960)
福岡 創  大阪大学, 生命機能研究科, 准教授 (50447190)
蔡 栄淑  大阪大学, 生命機能研究科, 助教 (40378716)
森下 喜弘  国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (00404062)
岩城 光宏  国立研究開発法人理化学研究所, 生命機能科学研究センター, 客員研究員 (30432503)
猪股 秀彦  国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (60372166)
中島 昭彦  東京大学, 大学院総合文化研究科, 助教 (90612119)
Project Period (FY) 2019-06-28 – 2024-03-31
Project Status Granted (Fiscal Year 2022)
Budget Amount *help
¥218,530,000 (Direct Cost: ¥168,100,000、Indirect Cost: ¥50,430,000)
Fiscal Year 2022: ¥39,390,000 (Direct Cost: ¥30,300,000、Indirect Cost: ¥9,090,000)
Fiscal Year 2021: ¥43,160,000 (Direct Cost: ¥33,200,000、Indirect Cost: ¥9,960,000)
Fiscal Year 2020: ¥29,510,000 (Direct Cost: ¥22,700,000、Indirect Cost: ¥6,810,000)
Fiscal Year 2019: ¥58,630,000 (Direct Cost: ¥45,100,000、Indirect Cost: ¥13,530,000)
Keywords情報物理学 / 生物物理学 / 非平衡統計力学 / 情報熱力学
Outline of Research at the Start

本領域は、生命現象を分子レベルから定量的に計測する技術の発展と、非平衡系の統計力学・情報熱力学理論の深化を背景とした、両者の融合領域である。生命現象の理解という具体的な課題に対して「情報を力、エネルギーと同列に物理的対象として議論する新しい物理学」を構築することで、生物学と物理学の間の新たな学際領域を開拓する。この目的を達成するために、本総括班は、領域内での生物系の実験研究と物理系の理論研究の学際融合研究を推進する

Outline of Annual Research Achievements

本領域は、生命現象を題材として、情報を力、エネルギーなどと同列に物理的対象として議論する新しい物理学を構築することが目標である。その理論的支柱である情報の物理学の深化発展と、実験対象たる生命現象における情報の計測を車の両輪として推進する。従って、基本的な戦略は、「情報の物理学」理論研究と「生命現象における情報」の実験・計測の融合である。そのため、異分野融合推進のための施策が総括班の活動の中心となる。
初年度である19年度には、まずキックオフも兼ねて領域会議を実施した。単なる研究成果報告会ではなく、十分な議論による相互理解を深めるために、研究発表の時間よりも議論のための時間を多くとるのと併せて、理論家から実験家むけの入門的講義を行うなどの工夫を行った。この入門的講義を発展させて、情報熱力学の理論家と実験家が互いに理解を深めるための情報熱力学の勉強会を19年度末に企画していたが、残念ながらコロナ禍によって開催することが出来なかった。
もう一つの異分野融合促進の中核的な事業として、理論研究者が実験現場に入り、実験研究者が理論研究室を訪れるという人材交流を推奨し、領域としてサポートすることにした。コロナ禍によって一時中断されたが、本事業による交流を契機とした共同研究が立ち上がるなど、期待通りの成果があがりつつある。
国際連携活動については、コロナ禍により直接の往来は出来ていないが、zoomなどを介して在外研究者によるセミナーを開催するなどの形で国際交流活動を開始した。
さらに、日本生物物理学会などと共催シンポジウムを開催し、領域活動の紹介を行った。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

19年度末に予定していた勉強会や人材交流事業が中止・延期となってしまったが、それ以外の施策は予定通りにスタートしており、おおむね順調に進展していると考える。

Strategy for Future Research Activity

コロナ禍の影響で、直接的な人的交流の機会が大きく失われており、異分野融合の促進という観点からは望ましくない環境にある。一方で、zoomなどを用いたオンラインでの研究交流の機会が拡大し、海外も含めて距離の制約無く交流することが可能となった。このような外部環境の変化に応じた形で、領域活動を発展させていきたいと考えている。

Report

(1 results)
  • 2019 Annual Research Report

Research Products

(121 results)

All 2020 2019 Other

All Journal Article (31 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 31 results,  Open Access: 18 results) Presentation (87 results) (of which Int'l Joint Research: 20 results,  Invited: 70 results) Book (2 results) Remarks (1 results)

  • [Journal Article] Equilibrium measurement method of slip length based on fluctuating hydrodynamics2020

    • Author(s)
      Nakano Hiroyoshi, Sasa Shin-ichi
    • Journal Title

      Physical Review E

      Volume: 101 Pages: 33109-33109

    • DOI

      10.1103/physreve.101.033109

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An Improved Fluorescent Protein-Based Expression Reporter System That Utilizes Bioluminescence Resonance Energy Transfer and Peptide-Assisted Complementation2020

    • Author(s)
      Taishi Kakizuka, Akira Takai, Keiko Yoshizawa, Yasushi Okada, Tomonobu M Watanabe
    • Journal Title

      CHEMICAL COMMUNICATIONS (CAMBRIDGE, ENGLAND)

      Volume: 56 Pages: 3625-3628

    • DOI

      10.1039/c9cc08664a

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Fluctuation窶途esponse inequality out of equilibrium2020

    • Author(s)
      Dechant Andreas, Sasa Shin-ichi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 6430-6436

    • DOI

      10.1073/pnas.1918386117

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improved secretion of glycoproteins using an N-glycan-restricted passport sequence tag recognized by cargo receptor2020

    • Author(s)
      Yagi H., Yagi-Utsumi M., Honda R., Ohta Y., Saito T., Nishio M., Ninagawa S., Suzuki K., Anzai T., Kamiya Y., Aoki K., Nakanishi M., Satoh T., Kato K.
    • Journal Title

      NATURE COMMUNICATIONS

      Volume: 11 Pages: 1368-1368

    • DOI

      10.1038/s41467-020-15192-1

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Single-molecule imaging of PI(4,5)P2 and PTEN in vitro reveals a positive feedback mechanism for PTEN membrane binding2020

    • Author(s)
      2.Yoshioka, D., Fukushima, S., Koteishi, H., Okuno, D., Ide, T., Matsuoka, S., and Ueda, M.
    • Journal Title

      COMMUNICATIONS BIOLOGY

      Volume: 3 Pages: 92-92

    • DOI

      10.1038/s42003-020-0818-3

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Talin B regulates collective cell migration via PI3K signaling in Dictyostelium discoideum mounds2020

    • Author(s)
      Shin-Ichi Yamazaki, Hidenori Hashimura, Yusuke V. Morimoto, Yukihiro Miyanaga, Satomi Matsuoka, Yoichiro Kamimura, Masahiro Ueda
    • Journal Title

      BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

      Volume: 525 Pages: 372-377

    • DOI

      10.1016/j.bbrc.2020.02.060

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Kardar-Parisi-Zhang Interfaces with Curved Initial Shapes and Variational Formula2020

    • Author(s)
      Fukai Yohsuke T.、Takeuchi Kazumasa A.
    • Journal Title

      PHYSICAL REVIEW LETTERS

      Volume: 124 Pages: 060601-060601

    • DOI

      10.1103/physrevlett.124.060601

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phase separation organizes the site of autophagosome formation2020

    • Author(s)
      Fujioka Y., Alam J. M., Noshiro D., Mouri K., Ando T., Okada Y., May A. I., Knorr R. L., Suzuki K., Ohsumi Y., Noda N. N.
    • Journal Title

      NATURE

      Volume: 578 Pages: 301-305

    • DOI

      10.1038/s41586-020-1977-6

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Thermodynamic entropy as a Noether invariant in a Langevin equation2020

    • Author(s)
      Minami Yuki, Sasa Shin-Ichi
    • Journal Title

      Journal of Statistical Mechanics: Theory and Experiment

      Volume: 2020 Pages: 13213-13213

    • DOI

      10.1088/1742-5468/ab5b8b

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Reliable target ligand detection by noise-induced receptor cluster formation2020

    • Author(s)
      Kajita Masashi K.、Aihara Kazuyuki、Kobayashi Tetsuya J.
    • Journal Title

      CHAOS (WOODBURY, N.Y.)

      Volume: 30 Pages: 011104-011104

    • DOI

      10.1063/1.5140714

    • NAID

      120006859509

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Linking substrate and nucleus via actin cytoskeleton in pluripotency maintenance of mouse embryonic stem cells2020

    • Author(s)
      David Brit Gracy、Fujita Hideaki、Yasuda Kyota、Okamoto Kazuko、Panina Yulia、Ichinose Junya、Sato Osamu、Horie Masanobu、Ichimura Taro、Okada Yasushi、Watanabe Tomonobu M
    • Journal Title

      STEM CELL RESEARCH

      Volume: 41 Pages: 101614-101614

    • DOI

      10.1016/j.scr.2019.101614

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microscopic Reversibility and Macroscopic Irreversibility: From the Viewpoint of Algorithmic Randomness2019

    • Author(s)
      Hiura Ken, Sasa Shin-ichi
    • Journal Title

      Journal of Statistical Physics

      Volume: 177 Pages: 727-751

    • DOI

      10.1007/s10955-019-02387-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Macroscopic Thermodynamic Reversibility in Quantum Many-Body Systems2019

    • Author(s)
      Philippe Faist, Takahiro Sagawa, Kohtaro Kato, Hiroshi Nagaoka, and Fernando G. S. L. Brandão,
    • Journal Title

      PHYSICAL REVIEW LETTERS

      Volume: 123

    • DOI

      10.1103/physrevlett.123.250601

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chromatin state switching in a polymer model with mark-conformation coupling2019

    • Author(s)
      Adachi Kyosuke, Kawaguchi Kyogo
    • Journal Title

      PHYSICAL REVIEW E

      Volume: 100

    • DOI

      10.1103/physreve.100.060401

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Global Thermodynamics for Heat Conduction Systems2019

    • Author(s)
      Naoko Nakagawa, Shin-ichi Sasa
    • Journal Title

      JOURNAL OF STATISTICAL PHYSICS

      Volume: 177 Pages: 825-888

    • DOI

      10.1007/s10955-019-02393-2

    • NAID

      120006895420

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative analysis reveals reciprocal regulations underlying recovery dynamics of thymocytes and thymic environment in mice2019

    • Author(s)
      Kaneko Kazumasa B.、Tateishi Ryosuke、Miyao Takahisa、Takakura Yuki、Akiyama Nobuko、Yokota Ryo、Akiyama Taishin、Kobayashi Tetsuya J.
    • Journal Title

      COMMUNICATIONS BIOLOGY

      Volume: 2 Pages: 444-444

    • DOI

      10.1038/s42003-019-0688-8

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Information thermodynamics for interacting stochastic systems without bipartite structure2019

    • Author(s)
      R. Chétrite, M. L. Rosinberg, T. Sagawa, and G. Tarjus,
    • Journal Title

      JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

      Volume: 11402 Pages: 1-55

    • DOI

      10.1088/1742-5468/ab47fe

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fitness Gain of Individually Sensed Information by Cells2019

    • Author(s)
      Kobayashi Tetsuya J.、Sughiyama Yuki
    • Journal Title

      ENTROPY

      Volume: 21 Pages: 1002-1002

    • DOI

      10.3390/e21101002

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enhancement algorithms for blinking fluorescence imaging2019

    • Author(s)
      Pchelintsev Yakov, Nasonov Andrey, Krylov Andrey, Enoki Sawako, Okada Yasushi
    • Journal Title

      ACM INTERNATIONAL CONFERENCE PROCEEDING SERIES

      Volume: 0

    • DOI

      10.1145/3366174.3366183

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage.2019

    • Author(s)
      Sharir Amnon, Marangoni Pauline, Zilionis Rapolas, Wan Mian, Wald Tomas, Hu Jimmy K, Kawaguchi Kyogo, Castillo-Azofeifa David, Epstein Leo, Harrington Kyle, Pagella Pierfrancesco, Mitsiadis Thimios, Siebel Christian W, Klein Allon M, Klein Ophir D
    • Journal Title

      NATURE CELL BIOLOGY

      Volume: 21

    • DOI

      10.1038/s41556-019-0378-2

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A photostable fluorescent marker for the superresolution live imaging of the dynamic structure of the mitochondrial cristae2019

    • Author(s)
      Wang C., Taki M., Sato Y., Tamura Y., Yaginuma H., Okada Y., Yamaguchi S.
    • Journal Title

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

      Volume: 116 Pages: 15817-15822

    • DOI

      10.1073/pnas.1905924116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Shannon’s information theory 70 years on: applications in classical and quantum physics2019

    • Author(s)
      Gerardo Adesso, Nilanjana Datta, Michael J W Hall, Takahiro Sagawa
    • Journal Title

      JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL

      Volume: 52 Pages: 1-4

    • DOI

      10.1088/1751-8121/ab25b7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Statistical Mechanical Expressions of Slip Length2019

    • Author(s)
      Nakano Hiroyoshi, Sasa Shin-ichi
    • Journal Title

      Journal of Statistical Physics

      Volume: 176 Pages: 312-357

    • DOI

      10.1007/s10955-019-02302-7

    • NAID

      130008147994

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Heating and cooling of quantum gas by eigenstate Joule expansion2019

    • Author(s)
      Noh Jae Dong、Iyoda Eiki、Sagawa Takahiro
    • Journal Title

      PHYSICAL REVIEW E

      Volume: 100 Pages: 010106-010106

    • DOI

      10.1103/physreve.100.010106

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Neuron-specific knockdown of Drosophila HADHB induces a shortened lifespan, deficient locomotive ability, abnormal motor neuron terminal morphology and learning disability2019

    • Author(s)
      Li J., Suda K., Ueoka I., Tanaka R., Yoshida H., Okada Y., Okamoto Y., Hiramatsu Y., Takashima H., Yamaguchi M.
    • Journal Title

      EXPERIMENTAL CELL RESEARCH

      Volume: 379 Pages: 150-158

    • DOI

      10.1016/j.yexcr.2019.03.040

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Reconstruction of Par-dependent polarity in apolar cells reveals a dynamic process of cortical polarization2019

    • Author(s)
      Kono K, Yoshiura S, Fujita I, Okada Y, Shitamukai A, Shibata T, Matsuzaki F
    • Journal Title

      ELIFE

      Volume: 8 Pages: 1-31

    • DOI

      10.7554/elife.45559

    • NAID

      120006653006

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Universal scrambling in gapless quantum spin chains2019

    • Author(s)
      Nakamura Shunsuke、Iyoda Eiki、Deguchi Tetsuo、Sagawa Takahiro
    • Journal Title

      PHYSICAL REVIEW B

      Volume: 99 Pages: 224305-224305

    • DOI

      10.1103/physrevb.99.224305

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Peroxisomes control mitochondrial dynamics and the mitochondrion-dependent pathway of apoptosis2019

    • Author(s)
      Tanaka H., Okazaki T., Aoyama S., Yokota M., Koike M., Okada Y., Fujiki Y. and Gotoh Y.
    • Journal Title

      JOURNAL OF CELL SCIENCE

      Volume: -

    • DOI

      10.1242/jcs.224766

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tissue self-organization based on collective cell migration by contact activation of locomotion and chemotaxis2019

    • Author(s)
      Fujimori Taihei、Nakajima Akihiko、Shimada Nao、Sawai Satoshi
    • Journal Title

      PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

      Volume: 116 Pages: 4291-4296

    • DOI

      10.1073/pnas.1815063116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Lane formation and critical coarsening in a model of bacterial competition2019

    • Author(s)
      Shimaya Takuro、Takeuchi Kazumasa A.
    • Journal Title

      PHYS. REV. E

      Volume: 99 Pages: 042403-042403

    • DOI

      10.1103/physreve.99.042403

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single-cell quantification of the concentrations and dissociation constants of endogenous proteins2019

    • Author(s)
      Akira T Komatsubara, Yuhei Goto, Yohei Kondo, Michiyuki Matsuda, Kazuhiro Aoki
    • Journal Title

      THE JOURNAL OF BIOLOGICAL CHEMISTRY

      Volume: 294 Pages: 6062-6072

    • DOI

      10.1074/jbc.ra119.007685

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Presentation] 細胞内自己組織化現象の1分子計測に基づく1分子粒度シミュレーション2020

    • Author(s)
      松岡 里実
    • Organizer
      日本化学会第100春季年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Understanding biological sensing and its optimality2020

    • Author(s)
      小林 徹也
    • Organizer
      Universal Principles in Biological Systems and their Evolution
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] アクティブネマティック細胞とキラリティ2020

    • Author(s)
      川口 喬吾
    • Organizer
      山田研究会「動的過程における右と左」ー非平衡、非対称、非線形が紡ぐ学際研究ー」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Optogenetics for manipulating cellular functions2020

    • Author(s)
      青木 一洋
    • Organizer
      OIST seminar
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Information processing in cellular systems and the fitness value of information2020

    • Author(s)
      小林 徹也
    • Organizer
      Computational Principles in Active Perception and Reinforcement Learning in the Brain
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] リソース理論によるマクロ熱力学ポテンシャルの存在証明2020

    • Author(s)
      沙川 貴大
    • Organizer
      量子論の諸問題と今後の発展(QMKEK7)
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Thermodynamic resource theory of quantum many-body systems2020

    • Author(s)
      沙川 貴大
    • Organizer
      Mini-Workshop on Quantum System Engineering
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Live cell imaging technologies for single-cell analysis2020

    • Author(s)
      岡田 康志
    • Organizer
      第29回ホットスプリングハーバー国際シンポジウム
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Applying condensed matter concepts to collective cell dynamics and tissues2020

    • Author(s)
      川口 喬吾
    • Organizer
      ASHBi Retreat
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] モルフォゲンを介した組織パターン形成の理解と制御2020

    • Author(s)
      猪股 秀彦
    • Organizer
      脊椎動物の起源を知る研究集会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Collective migration in the parallel world2020

    • Author(s)
      澤井 哲
    • Organizer
      Discussion Meeting on Conflict and Cooperation in Cellular Populations (CCCP 2020)
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] The Fisher information and the entropy production2020

    • Author(s)
      伊藤 創祐
    • Organizer
      Combining Information-theoretic Perspectives on Agency (CIPA)
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 超解像・一分子イメージングで探る軸索輸送の分子機構2020

    • Author(s)
      岡田 康志
    • Organizer
      Brain Club
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] The Chemotactic Response and Motor Function of a Bacterial Flagellar Motor in a Single Cell2020

    • Author(s)
      石島 秋彦
    • Organizer
      2020 Sensory Transduction in Microorganisms Gordon Research Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Crawling morphology and collective migration in amoeboid cells2020

    • Author(s)
      澤井 哲
    • Organizer
      アクティブマター研究会2020 企画公演「Crawling motion」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 小胞輸送の速度と揺らぎと温度2019

    • Author(s)
      岡田 康志
    • Organizer
      第4回バイオサーモロジーワークショップ
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Thermodynamic resource theory of quantum many-body systems and generalized quantum Stein's Lemma2019

    • Author(s)
      沙川 貴大
    • Organizer
      MINI WORKSHOP ON CLASSICAL AND QUANTUM RESOURCES
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞集団運動の非平衡物理とトポロジー2019

    • Author(s)
      川口 喬吾
    • Organizer
      待兼山コロキウム, 大阪大学
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 超解像顕微鏡法とその限界2019

    • Author(s)
      岡田 康志
    • Organizer
      第61回日本顕微鏡学会九州支部総会・学術講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞集団運動とトポロジー2019

    • Author(s)
      川口 喬吾
    • Organizer
      筑波大学物性セミナー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Quantification and manipulation of cell signaling by live cell imaging2019

    • Author(s)
      青木 一洋
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Mathmatical model-based analysis of morphodynamic spectrum of fast migrating cells2019

    • Author(s)
      澤井 哲
    • Organizer
      第42回日本分子生物学会年会シンポジウム 「計測、数理、制御の三位一体による生命動態の解明-Understanding biodynamics by the trinity of measuring, mathematical, and controlling techniques」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] マウス着床前発生における細胞数半自動計測法を用いた産仔に繋がる胚の解析2019

    • Author(s)
      小林 徹也
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Dissecting the Molecular Mechanisms of Axonal Transport through Imaging.2019

    • Author(s)
      岡田 康志
    • Organizer
      The 7th Workshop on physics between Ecole Normale Superleure and University of Tokyo
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 液晶トポロジカル欠陥の三次元ダイナミクス観察2019

    • Author(s)
      竹内 一将
    • Organizer
      さきがけ「トポロジー」領域 第2回領域全体会議
    • Related Report
      2019 Annual Research Report
  • [Presentation] Thermodynamics of information geometry as a generalization of the Glansdorff-Prigogine criterion for stability2019

    • Author(s)
      伊藤 創祐
    • Organizer
      UBI-NanoLSI workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Conformational dynamics of microtubules.2019

    • Author(s)
      岡田 康志
    • Organizer
      Joint UBI-Nano LSI workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cell segregation by contact directed migration2019

    • Author(s)
      澤井 哲
    • Organizer
      Joint UBI-NanoLSI workshop TRENDS IN MOLECULAR BIOPHYSICS OF LIVING CELLS
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterizing complexity of many-body quantum dynamics by higher-order eigenstate thermalization2019

    • Author(s)
      沙川 貴大
    • Organizer
      ICTS Workshop "Thermalization, many-body localization and hydrodynamics"
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 情報から捉える生命現象2019

    • Author(s)
      小林 徹也
    • Organizer
      定量生物学の会 北海道キャラバン 2019
    • Related Report
      2019 Annual Research Report
  • [Presentation] Optical control of cell signaling in human cells, fission yeast, and worms2019

    • Author(s)
      青木 一洋
    • Organizer
      ICSB2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Toward imaging-based epigenome analysis in living cells.2019

    • Author(s)
      岡田 康志
    • Organizer
      4th Symposium for the Inter-University Research Network for Trans-Omics Medicine,
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Optical Control of Cell Signaling by Genetically Encoded PhyB-PIF System2019

    • Author(s)
      青木 一洋
    • Organizer
      Resonance Bio International Symposium
    • Related Report
      2019 Annual Research Report
  • [Presentation] Thermodynamics of information geometry and a generalization of the Glansdorff-Prigogine criterion for stability2019

    • Author(s)
      伊藤 創祐
    • Organizer
      Workshop on Recent Progress in Mathematical and Statistical Physics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualization and manipulation of cell signaling2019

    • Author(s)
      青木 一洋
    • Organizer
      The 2nd NIBB-Princeton Joint Symposium Imaging and Quantitative Biology
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Thermodynamics of information geometry and a generalization of the Glansdorff-Prigogine criterion for stability2019

    • Author(s)
      伊藤 創祐
    • Organizer
      EAJSSP2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Active nematic cells and topology2019

    • Author(s)
      川口 喬吾
    • Organizer
      East Asia Joint Seminars on Statistical Physics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞内シグナル伝達系の 可視化・定量化から見えてきた 分子夾雑の効果2019

    • Author(s)
      青木 一洋
    • Organizer
      新学術領域「分子夾雑の生命化学」第2回関東シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞集団運動とトポロジー2019

    • Author(s)
      川口 喬吾
    • Organizer
      KUIAS-Heidelberg-RIKEN iTHEMS joint workshop, Kyoto Univ.
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Nonequilibrium properties of multicellular systems2019

    • Author(s)
      川口 喬吾
    • Organizer
      RIKEN Summer School Retreat
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] マクロ非平衡系の揺らぎと秩序形成 & 生命現象との関わり2019

    • Author(s)
      竹内 一将
    • Organizer
      「生命の情報物理学」 第一回領域会議
    • Related Report
      2019 Annual Research Report
  • [Presentation] 神経幹細胞集団運動のキラリティとトポロジカル端状態2019

    • Author(s)
      川口 喬吾
    • Organizer
      IPB seminar
    • Related Report
      2019 Annual Research Report
  • [Presentation] 全反射顕微鏡の理想と現実2019

    • Author(s)
      岡田 康志
    • Organizer
      生物物理学会BPSセミナー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 情報熱力学、計測科学と生物学2019

    • Author(s)
      岡田 康志
    • Organizer
      生物物理学会総会シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Physical properties of homeostatic and active tissues2019

    • Author(s)
      川口 喬吾
    • Organizer
      The 57th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Novel extracellular fluid mechanism for regulation of secreted proteins in Xenopus laevis.2019

    • Author(s)
      猪股 秀彦
    • Organizer
      The 57th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] sCMOSカメラの性能はどこまで向上したか?2019

    • Author(s)
      岡田 康志
    • Organizer
      生物物理学会BPSセミナー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Second law and eigenstate thermalization in isolated quantum many-body systems2019

    • Author(s)
      沙川 貴大
    • Organizer
      Fundamental Aspects of Statistical Mechanics and the Emergence of Thermodynamics in Non-Equilibrium Systems
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 遺伝子技術と生細胞イメージングによる内在性分子濃度と解離定数の定量化2019

    • Author(s)
      青木 一洋
    • Organizer
      第60回日本組織細胞化学会総会・学術集会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 細胞ダイバーシティーへの数理的アプローチ2019

    • Author(s)
      小林 徹也
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Thermodynamic interpretation of information geometry and thermodynamic uncertainty relationships2019

    • Author(s)
      伊藤 創祐
    • Organizer
      2nd MBI-UBI Joint Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生細胞イメージングによるJNK活性の細胞間不均一性と確率的な細胞死の可視化2019

    • Author(s)
      青木 一洋
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] はいまわる細胞の形態表現空間とデータ駆動解析2019

    • Author(s)
      澤井 哲
    • Organizer
      2019年度日本数理生物学会年会 企画シンポジウム「データに基づく細胞・組織生物学」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Glansdorff-Prigogineの安定性規準と情報幾何の熱力学2019

    • Author(s)
      伊藤 創祐
    • Organizer
      日本物理学会 2019年 秋季大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 非平衡スケーリング則の物理学:基礎理論と実験的進展2019

    • Author(s)
      竹内 一将
    • Organizer
      立教大学 理学研究科 物理学専攻 集中講義
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 階層をつなぐ視点からダイナミクスを考える。2019

    • Author(s)
      澤井 哲
    • Organizer
      第31回高遠・分子細胞生物学シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 乱流転移に現れる臨界現象、普遍性2019

    • Author(s)
      竹内 一将
    • Organizer
      流体若手夏の学校 2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Nonequilibrium physics of collective cell migration and tissue homeostasis2019

    • Author(s)
      川口 喬吾
    • Organizer
      Academia Sinica (seminar)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] イメージングで細胞の生老病死は理解できるか2019

    • Author(s)
      岡田 康志
    • Organizer
      第1回老化研究セミナー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 生細胞イメージングによる細胞内シグナル伝達系の可視化、定量化、操作2019

    • Author(s)
      青木 一洋
    • Organizer
      第9回光科学異分野横断萌芽研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] KPZ普遍クラス -厳密解と実験が奏でる非平衡のスケーリング則-2019

    • Author(s)
      竹内 一将
    • Organizer
      第64回 物性若手夏の学校
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Second law and eigenstate thermalization in isolated quantum many-body systems2019

    • Author(s)
      沙川 貴大
    • Organizer
      International Workshop on Quantum Thermodynamics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Disclination turbulence - from defect dynamics to macroscopic scaling laws -2019

    • Author(s)
      竹内 一将
    • Organizer
      2019 Gordon Conference on Liquid Crystals
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Stochastic thermodynamics and information geometry2019

    • Author(s)
      伊藤 創祐
    • Organizer
      Statphys 27
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞内シグナル伝達系の 可視化、定量化、光操作2019

    • Author(s)
      青木 一洋
    • Organizer
      大阪大学蛋白質研究所セミナー がん研究の新機軸
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 免疫恒常性維持機構への数理的アプローチ2019

    • Author(s)
      小林 徹也
    • Organizer
      細胞ダイバース第四回公開シンポジウム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Live-cell quantification of endogenous protein interactions by genome editing technique and fluorescence cross-correlation spectroscopy2019

    • Author(s)
      青木 一洋
    • Organizer
      第71回細胞生物学会年次大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 成体組織恒常性の普遍モデルとその性質2019

    • Author(s)
      川口 喬吾
    • Organizer
      第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] クロマチン構造転移の統計物理学2019

    • Author(s)
      川口 喬吾
    • Organizer
      新学術領域 クロマチン潜在脳 領域会議
    • Related Report
      2019 Annual Research Report
  • [Presentation] Visualization and manipulation of cell signaling2019

    • Author(s)
      青木 一洋
    • Organizer
      ExCELLS visit talks at Institute of Biological Chemistry, Academia Sinica
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 成体組織恒常性の非平衡物理2019

    • Author(s)
      川口 喬吾
    • Organizer
      北大MMCセミナー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 神経幹細胞の回転運動と 3次元フローを幾何学的に制御する2019

    • Author(s)
      川口 喬吾
    • Organizer
      新学術領域 3Dモルフォロジック 領域会議
    • Related Report
      2019 Annual Research Report
  • [Presentation] Revisiting Model-A dynamic scaling laws in twisted nematics: phase ordering and critical percolation2019

    • Author(s)
      竹内 一将
    • Organizer
      FSP2019: Frontiers of Statistical Physics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Observing dynamics of topological defects in liquid crystal: toward understanding their hierarchical structure2019

    • Author(s)
      竹内 一将
    • Organizer
      第二回クラスター階層領域研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ライブセルイメージングおよび単一胚移植による産まれる発生パターンの解析2019

    • Author(s)
      小林 徹也
    • Organizer
      有性生殖にかかわる染色体・クロマチン・核動態に関する研究会(遺伝研研究会)
    • Related Report
      2019 Annual Research Report
  • [Presentation] Thermodynamics of information geometry2019

    • Author(s)
      伊藤 創祐
    • Organizer
      Data analysis and machine learning in dynamical systems
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Second law and eigenstate thermalization in isolated quantum many-body systems2019

    • Author(s)
      沙川 貴大
    • Organizer
      Quantum Spins at the Nanoscale
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Super-resolution live-cell imaging 2019: new optics, new dyes, and new algorithms.2019

    • Author(s)
      岡田 康志
    • Organizer
      カナダ顕微鏡学会(MSC-SMC annual meeting) 2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Understanding adaptive immune system as reinforcement learning2019

    • Author(s)
      小林 徹也
    • Organizer
      Interface between Immunology & Quantitative Biology
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Live-cell quantification of the concentration and dissociation constant of endogenous proteins by a combination of CRISPR/Cas9 genome editing and FCS/FCCS.2019

    • Author(s)
      青木 一洋
    • Organizer
      Interface between Immunology & Quantitative Biology
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] A physico-chemical modeling and data-driven approach to cell morphology dynamics2019

    • Author(s)
      澤井 哲
    • Organizer
      金沢大学NanoELSI 公開セミナー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Deciphering morphology landscape of fast migrationg cells by dynamical systems modeling and machine learning2019

    • Author(s)
      澤井 哲
    • Organizer
      A3 workshop for Mathematical Life Science
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Stochastic thermodynamics and information geometry2019

    • Author(s)
      伊藤 創祐
    • Organizer
      Statistical physics of complex systems
    • Related Report
      2019 Annual Research Report
  • [Presentation] Revisiting circular vs flat interfaces and application of variational principle2019

    • Author(s)
      竹内 一将
    • Organizer
      Key Challenges in Statistical Physics
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 生体内での情報と熱の物理法則2019

    • Author(s)
      伊藤 創祐
    • Organizer
      第5回 シンポジウム 「生物物理の新展開」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 生細胞イメージングにおける超解像光学顕微鏡の現状と課題2019

    • Author(s)
      岡田 康志
    • Organizer
      ナノプローブテクノロジー第167委員会第91回研究会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Lecture ‘Microinjection of the embryos (Xenopus session)’2019

    • Author(s)
      猪股 秀彦
    • Organizer
      The 15th Transgenic Technology Meeting
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Book] "物理科学,この1年 2020 (Parity)"2020

    • Author(s)
      川口 喬吾
    • Publisher
      丸善出版
    • ISBN
      9784621304860
    • Related Report
      2019 Annual Research Report
  • [Book] "物理科学, この1年 2020 (Parity)"2020

    • Author(s)
      岡田 康志
    • Publisher
      丸善出版
    • ISBN
      4621304860
    • Related Report
      2019 Annual Research Report
  • [Remarks] 情報物理学でひもとく生命の秩序と設計原理

    • URL

      https://infophys-bio.jp/

    • Related Report
      2019 Annual Research Report

URL: 

Published: 2019-07-04   Modified: 2022-07-01  

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