Environmental sensing of plants: Signal perception, processing and cellular responses

• Project Area: Environmental sensing of plants: Signal perception, processing and cellular responses
• Project/Area Number: 22120001
• Research Category: Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)
• Allocation Type: Single-year Grants
• Review Section: Biological Sciences
• Research Institution: Kyoto University
• Principal Investigator: NAGATANI Akira 京都大学, 理学(系)研究科(研究院), 教授 (40183082)
• Co-Investigator(Kenkyū-buntansha): MIMURA Tetsuro 神戸大学, 理学研究科, 教授 (20174120) ; UEMURA Matsuo 岩手大学, 農学部, 教授 (00213398) ; TOKUTOMI Satoru 大阪府立大学, 理学系研究科, 教授 (90142009) ; NISHIMURA Mikio 基礎生物学研究所, 教授 (80093061)
• Co-Investigator(Renkei-kenkyūsha): TAKAHASHI Hideyuki 東北大学, 生命科学研究科, 教授 (70179513) ; TAKAHASHI Katsutoshi 独立行政法人産業技術総合研究所, 主任研究員 (00271792) ; NISHIMURA Ikuko 京都大学, 理学研究科, 教授 (00241232) ; HOSOKAWA Yoichiro 奈良先端科学技術大学院大学, 物質創成科学研究科, 准教授 (20448088)
• Project Period (FY): 2010-04-01 – 2016-03-31
• Project Status: Completed(Fiscal Year 2015)
• Budget Amount: ¥180,310,000 (Direct Cost : ¥138,700,000、Indirect Cost : ¥41,610,000); Fiscal Year 2015 : ¥3,900,000 (Direct Cost : ¥3,000,000、Indirect Cost : ¥900,000); Fiscal Year 2014 : ¥14,560,000 (Direct Cost : ¥11,200,000、Indirect Cost : ¥3,360,000); Fiscal Year 2013 : ¥15,210,000 (Direct Cost : ¥11,700,000、Indirect Cost : ¥3,510,000); Fiscal Year 2012 : ¥15,990,000 (Direct Cost : ¥12,300,000、Indirect Cost : ¥3,690,000); Fiscal Year 2011 : ¥15,860,000 (Direct Cost : ¥12,200,000、Indirect Cost : ¥3,660,000); Fiscal Year 2010 : ¥114,790,000 (Direct Cost : ¥88,300,000、Indirect Cost : ¥26,490,000)
• Keywords: 環境応答 / 新技術 / 植物細胞 / 環境感覚 / ポストゲノム / 細胞微細解析

Outline of Annual Research Achievements

植物は、移動可能な動物と比較して、より過酷な光、温度、水分などの環境の変化にさらされているが、特殊化した感覚器官を発達させることなく巧みにこれに対応している。本領域では、植物環境応答分野、植物細胞生物学分野、細胞解析技術分野などの研究者が緊密に連携し、植物細胞に対する新規技術を開発するとともに、これをいちはやく実際の研究に応用し、植物科学分野における全く新しい研究領域を切り拓く。この目的に従い、領域としての活動を統括するために総括班を置いた。
研究班としての活動は昨年度で終了したが、総括班では、本領域の活動を総括するとともに、本領域で開発された新技術の普及が進むよう活動を行った。具体的には、日本植物生理学会が発行する国際誌Plant Cell Physiology（Impact factor 4.931）誌で特集号（NEW EMERGING TECHNOLOGIES FOR THE STUDY OF PLANT ENVIRONMETAL SENSING, July issue）の編集に携わり、本領域の成果に関連する論文9編を発表した。また、国際学会国内学会に参加し、本領域の活動に関する情報提供、情報交換に努めた。さらに、フェムト秒レーザー技術に関するデモンストレーションを含むワークショップを12月14日、奈良先端大、12月15日、京都大で開催し、領域内外の参加者に対し技術の普及に努めた。また、このワークショップでは、実際の共同研究が広く開始されるよう、参加者の実験材料で予備実験を行うなどフォローアップに努めた。

Research Progress Status

27年度が最終年度であるため、記入しない。

Strategy for Future Research Activity

27年度が最終年度であるため、記入しない。

Research Products

• [Int'l Joint Research] Ｂｒｉｓｔｏｌ Ｕｎｉｖｅｒｓｉｔｙ(ＵＫ)
• [Journal Article] Tissue-specific regulation of flowering by photoreceptors. (2016)
  • Author(s): Endo, M., T. Araki and A. Nagatani
  • Journal Title: Cell. Mol. Life Sci. Volume : 73(4) Pages : 829-39
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Spatial regulation of the gene expression response to shade in Arabidopsis seedlings. (2015)
  • Author(s): Nito, K., T. Kajiyama, J. Unten-Kobayashi, A. Fujii, N. Mochizuki, H. Kambara and A. Nagatani
  • Journal Title: Plant Cell Physiol Volume : 56(7) Pages : 1306-1319
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Position-specific gene expression analysis using a microgram dissection method combined with on-bead cDNA library construction. (2015)
  • Author(s): Kajiyama, T., A. Fujii, K. Arikawa, T. Habu, N. Mochizuki, A. Nagatani and H. Kambara
  • Journal Title: Plant Cell Physiol Volume : 56(7) Pages : 1320-1328
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] 1)Development and application of a high resolution imaging mass spectroscope for the study of plant tissues (2015)
  • Author(s): K.Takahashi, T.Kozuka, A.Anegawa, A.Nagatani, T.Mimura
  • Journal Title: PLANT AND CELL PHYSIOLOGY Volume : 56 Pages : 1329-1338
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Editorial: Emerging technologies for the study of plant environmental sensing. (2015)
  • Author(s): Nagatani A, Mimura T
  • Journal Title: Plant Cell Physiol Volume : 56(7) Pages : 1249-1251
  • Open Access / Acknowledgement Compliant
• [Journal Article] Spatial regulation of the gene expression response to shade in Arabidopsis seedlings (2015)
  • Author(s): Nito, K., T. Kajiyama, J. Unten-Kobayashi, A. Fujii, N. Mochizuki, H. Kambara and A. Nagatani
  • Journal Title: Plant Cell Physiol Volume : Apr 22
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Diffuse DCP2 accumulates in DCP1 foci under heat stress in Arabidopsis thaliana. (2015)
  • Author(s): Motomura K, Le Q, Kutsuna N, Mano S, Nishimura M, Hamada T, Watanabe Y
  • Journal Title: Plant and Cell Physiology Volume : 56 Pages : 107-115
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] A dominant mutation in the light-oxygen and voltage2 domain vicinity impairs phototropin1 signaling in tomato. (2014)
  • Author(s): Sharma, S., E. Kharshiing, A. Srinivas, K. Zikihara, S. Tokutomi, A. Nagatani, H. Fukuyuma, R. Bodanapu, R. K. Behera, Y. Sreelakshmi and R. Sharma
  • Journal Title: Plant Physiol. Volume : 164 Pages : 2030-2044
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Photobody localization of phytochrome B is tightly correlated with prolonged and light-dependent inhibition of hypocotyl elongation in the dark. (2014)
  • Author(s): Van Buskirk, E.K., A.K. Reddy, A. Nagatani and M. Chen
  • Journal Title: Plant Physiol. Volume : 165 Pages : 595-607
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Nanoscale bending movement of biological micro-object induced by femtosecond laser impulse and its detection by atomic force microscopy (2014)
  • Author(s): Takenaka, M., T. Iino, A. Nagatani and Y. Hosokawa
  • Journal Title: Appl. Phys. Express Volume : 7 Pages : 087002-087002
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Chaperone and protease functions of LON protease 2 modulate the peroxisomal transition and degradation with autophagy. (2014)
  • Author(s): Goto-Yamada, S., Mano, S., Nakamori, C., Kondo, M., Yamawaki, R., Kato, A., and Nishimura, M
  • Journal Title: Plant Cell Physiol. Volume : 55 Pages : 482-496
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] Measurement of the number of peroxisomes (2014)
  • Author(s): Shibata, M., Oikawa, K., Mano, S., and Nishimura, M
  • Journal Title: Bio-Protoc Volume : 4
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] The Plant Organelles Database 3 (PODB3) update 2014: integrating electron micrographs and new options for plant organelle research (2014)
  • Author(s): Mano, S., Nakamura, T., Kondo, M., Miwa, T., Nishikawa, S., Mimura, T., Nagatani, A., and Nishimura, M.
  • Journal Title: Plant Cell Physiol. Volume : 55
  • Peer Reviewed / Open Access / Acknowledgement Compliant
• [Journal Article] Interaction between chaperone and protease functions of LON2, and autophagy during the functional transition of peroxisomes (2014)
  • Author(s): Goto-Yamada, S., Mano, S., and Nishimura, M.
  • Journal Title: Plant Signal. Behav． Volume : 9
• [Journal Article] MAIGO5 functions in protein export from Golgi-associated endoplasmic reticulum exit sites in Arabidopsis (2014)
  • Author(s): Takagi et al.
  • Journal Title: Plant Cell Volume : 25 Pages : 4658-4675
  • Peer Reviewed / Open Access
• [Journal Article] Highly oxidized peroxisomes are selectively degraded via autophagy in Arabidopsis. (2014)
  • Author(s): Shibata M, Oikawa K, Yoshimoto K, Kondo M, Mano S, Yamada K, Hayashi M, Sakamoto W, Ohsumi Y, Nishimura M.
  • Journal Title: Plant Cell Volume : 25 Pages : 4967-4983
  • Peer Reviewed
• [Journal Article] Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses. (2014)
  • Author(s): Satoh M, Tokaji Y, Nagano AJ, Hara-Nishimura I, Hayashi M, Nishimura M, Ohta H6, Masuda S
  • Journal Title: Plant Physiol. Biochem. Volume : in press Pages : 90-95
  • Peer Reviewed
• [Journal Article] Organ-specific quality control of plant peroxisomes is mediated by autophagy. (2014)
  • Author(s): Yoshimoto K, Shibata M, Kondo M, Oikawa K, Sato M, Toyooka K, Shirasu K, Nishimura M, Ohsumi Y.
  • Journal Title: J Cell Sci. Volume : 15 Pages : 1161-1168
  • Peer Reviewed / Open Access
• [Journal Article] Light-induced conformational changes of LOV (Light Oxygen Voltage-sensing domain) 1 and LOV2 relative to the kinase domain and regulation of kinase activity in Chlamydomonas phototropin. (2014)
  • Author(s): Okajima, K., Y. Aihara, Y. Takayama, M. Nakajima, S. Kashojiya, T. Hikima, T. Oroguchi, A. Kobayashi, Y. Sekiguchi, M. Yamamoto, T. Suzuki, A. Nagatani, M. Nakasako and S. Tokutomi
  • Journal Title: J. Biol. Chem Volume : 289 Pages : 413-422
  • Peer Reviewed
• [Journal Article] The Phototropic Response is Locally Regulated Within the Topmost Light-Responsive Region of the Arabidopsis thaliana Seedling. (2014)
  • Author(s): Yamamoto K, Suzuki T, Aihara Y, Haga K, Sakai T, Nagatani A.
  • Journal Title: Plant Cell Physiol. Volume : 55 Pages : 497-506
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Mg-chelatase I subunit 1 and Mg-Protoporphyrin IX methyltransferase affct the stomatal aperture in Arabidopsis thaliana" (2014)
  • Author(s): Tomiyama, M., S. Inoue, T. Tsuzuki, M. Soda, S. Morimoto, Y. Okigaki, T. Ohishi, N. Mochizuki, K. Takahashi, and T. Kinoshita
  • Journal Title: J. Plant Res. Volume : in press
  • Peer Reviewed
• [Journal Article] The plastidic DEAD-box RNA helicase22, HS3, is essential for plastid function both in seed development and in seedling growth. (2013)
  • Author(s): Kanai, M., M. Hayashi, M. Kondo and M. Nishimura
  • Journal Title: Plant Cell Physiol Volume : 54 Pages : 1431-1440
  • Peer Reviewed
• [Journal Article] Spatiotemporal secretion of PEROXIDASE36 is required for seed coat mucilage extrusion in Arabidopsis. (2013)
  • Author(s): Kunieda T, Shimoda T, Kondo M, Nishimura M, Nishitani K, Hara-Nishimura I.
  • Journal Title: Plant Cell. Volume : 25(4) Pages : 1355-1367
  • Peer Reviewed
• [Journal Article] Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. (2013)
  • Author(s): Tameshige T, Fujita H, Watanabe K, Toyokura K, Kondo M, Tatematsu K, Matsumoto N, Tsugeki R, Kawaguchi M, Nishimura M, Okada K.
  • Journal Title: PLoS Genetics Volume : 97
  • Peer Reviewed
• [Journal Article] MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana. (2013)
  • Author(s): Li L, Shimada T, Takahashi H, Koumoto Y, Shirakawa M, Takagi J, Zhao X, Tu B, Jin H, Shen Z, Han B, Jia M, Kondo M, Nishimura M, Hara-Nishimura I
  • Journal Title: Plant J. Volume : 76 Pages : 781-791
  • Peer Reviewed
• [Journal Article] Novel proteins interacting with peroxisomal protein receptor PEX7 in Arabidopsis thaliana. (2013)
  • Author(s): Cui S, Mano S, Yamada K, Hayashi M, Nishimura M.
  • Journal Title: Plant Signal Behav. Volume : 8
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS. (2013)
  • Author(s): Endo, M., Y. Tanigawa, T. Murakami, T. Araki and A. Nagatani
  • Journal Title: Proc. Natl. Acad. Sci. USA Volume : 110 Pages : 18017-18022
  • Peer Reviewed / Acknowledgement Compliant
• [Journal Article] Perforated-tape Epidermal Detachment (PED): A simple and rapid method for isolating epidermal peels from specific areas of Arabidopsis leaves (2013)
  • Author(s): Harue Ibata, Akira Nagatani, Nobuyoshi Mochizuki
  • Journal Title: Plant Biotechnology Volume : 30 Pages : 497-502
  • Peer Reviewed
• [Journal Article] Loss of XRN4 function can trigger cosuppression in a sequence-dependent manner. (2013)
  • Author(s): Hayashi, M., et al.,
  • Journal Title: Plant Cell Physiol. Volume : 53 Pages : 1310-1321
  • Peer Reviewed
• [Journal Article] Plasma membrane-localized Al-transporter from blue hydrangea sepals is a member of the anion permease family. (2013)
  • Author(s): Negishi, T., Oshima, K., Hattori, M., Yoshida, K.
  • Journal Title: Genes to Cells Volume : In press
  • Peer Reviewed
• [Journal Article] Identification of two novel endoplasmic reticulum body-specific integral membrane proteins. (2013)
  • Author(s): Yamada K et al.
  • Journal Title: Plant Physiol. Volume : 161(1) Pages : 108-120
  • Peer Reviewed
• [Journal Article] Proteomic analysis reveals the Rab GTPase RabE1c is involved in the degradation of the peroxisomal protein receptor PEX7 (Peroxin 7) (2013)
  • Author(s): Soungkui Cui, Yoichiro Fukao, Shoji Mano, Kenji Yamada, Makoto Hayashi and Mikio Nishimura
  • Journal Title: Journal of Biological Chemistry Volume : 288 Pages : 6014-6023
  • Peer Reviewed
• [Journal Article] Inhibition of Arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner. (2013)
  • Author(s): Chen, J., K. Sonobe, N. Ogawa, S. Masuda, A. Nagatani, Y. Kobayashi and H. Ohta
  • Journal Title: J. Plant Res. Volume : 126 Pages : 161-168
  • Peer Reviewed
• [Journal Article] carboxy-terminal membraneassociation domain of phototropin 2 isnecessary for chloroplast movements (2013)
  • Author(s): Kong, S.-G., T. Kagawa, M. Wada, A.Nagatani A
  • Journal Title: Plant Cell Physiol Volume : 54 Pages : 57-68
  • Peer Reviewed
• [Journal Article] Antagonistic regulation of leafflattening by phytochrome B andphototropin in Arabidopsis thaliana (2013)
  • Author(s): Kozuka, T., N. Suetsugu, M. Wada, A.Nagatani
  • Journal Title: Plant Cell Physiol Volume : 54 Pages : 69-79
  • Peer Reviewed
• [Journal Article] Bothphototropin 1 and 2 localize on thechloroplast outer membrane with distinctlocalization activity (2013)
  • Author(s): Kong, S.-G., N. Suetsugu, S. Kikuchi, M.Nakai, A. Nagatani, M. Wada
  • Journal Title: Plant CellPhysiol Volume : 54 Pages : 80-92
  • Peer Reviewed
• [Journal Article] Myosin XI-i Links the Nuclear Membrane to the Cytoskeleton to Control Nuclear Movement and Shape in Arabidopsis. (2013)
  • Author(s): Li L, Shimada T, Takahashi H, Koumoto Y, Shirakawa M, Takagi J, Zhao X, Tu B, Jin H, Shen Z, Han B, Jia M, Kondo M, Nishimura M, Hara-Nishimura I.
  • Journal Title: Current biology : CB Volume : 23 Issue : 18 Pages : 1776-1781
  • Publisher: Elsevier Ltd.
  • PMID: 23973298
  • Year and Date: 2013-09-23
  • Peer Reviewed
• [Journal Article] Arabidopsis phytochrome a is modularly structured to integrate the multiple features that are required for a highly sensitized phytochrome. (2012)
  • Author(s): Oka Y, Ono Y, Toledo-Ortiz G, Kokaji K, Matsui M, Mochizuki N, Nagatani A.
  • Journal Title: Plant Cell Volume : 24 Pages : 2949-2962
  • Peer Reviewed
• [Journal Article] Phytochrome B inhibits binding of Phytochrome-Interacting Factors to their target promoters. (2012)
  • Author(s): Park, E., J. Park, J. Kim, A. Nagatani, J.C. Lagarias and G. Choi
  • Journal Title: Plant J. Volume : 72 Pages : 537-546
  • Peer Reviewed
• [Journal Article] Mutations in the N-terminal flanking region of the blue-light sensing domain LOV2 disrupt its repressive activity on the kinase domain in the Chlamydomonas Phototropin (2012)
  • Author(s): Aihara, Y., T.Yamamoto, K.Okajima, K.Yamamoto, T.Suzuki, S.Tokutomi, K.Tanaka, A.Nagatani
  • Journal Title: J Biol.Chem. Volume : 287 Pages : 9901-9909
  • Peer Reviewed
• [Journal Article] Mutations in N-terminal flanking region of blue light-sensing light-oxygen and voltage 2 (LOV2) domain disrupt its repressive activity on kinase domain in the Chlamydomonas phototropin. (2012)
  • Author(s): Aihara, Y., T. Yamamoto, K. Okajima, K. Yamamoto, T. Suzuki, S. Tokutomi, K. Tanaka and A. Nagatani
  • Journal Title: The Journal of biological chemistry Volume : 287 Issue : 13 Pages : 9901-9909
  • Publisher: American Society for Biochemistry and Molecular Biology
  • PMID: 22291022
  • Year and Date: 2012-03-23
  • Peer Reviewed
• [Journal Article] Tissue-Autonomous Promotion of Palisade Cell Development by Phototropin 2 in Arabidopsis (2011)
  • Author(s): Kozuka T., et al
  • Journal Title: Plant Cell Volume : 23 Pages : 3684-3695
  • Peer Reviewed
• [Journal Article] A defect of peroxisomal membrane protein 38 causes enlargement of peroxisomes (2011)
  • Author(s): Shoji Mano
  • Journal Title: Plant and Cell Physiology Volume : 52 Pages : 2157-2172
  • Peer Reviewed
• [Journal Article] Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruts of the PEX1/PEX6 complex to peroxisomes (2011)
  • Author(s): Goto Shino
  • Journal Title: Plant Cell Volume : 23 Pages : 1573-1587
  • Peer Reviewed
• [Journal Article] The Plant Organelles Database 2 (PODB2) : An update containing movie data of plant organelle dynamics (2011)
  • Author(s): Mano Shoji
  • Journal Title: Plant Cell Physiol Volume : 52 Pages : 244-253
  • Peer Reviewed
• [Journal Article] The Plant Organelles Database 2 (PODB2) : an updated resource containing movie data to address plant organelle dynamics (2011)
  • Author(s): Mano S.
  • Journal Title: Plant & Cell Physiology Volume : 52 Pages : 244-253
  • Peer Reviewed
• [Journal Article] Cadmium sorption to plasma membrane isolated from barley roots is hampered by copper association onto membranes. 180:300-305 (2011)
  • Author(s): Uemura M
  • Journal Title: Plant Science Volume : 180 Pages : 300-305
  • Peer Reviewed
• [Journal Article] A way to sense light intensity : Multiple-excitation of the BLUF photoreceptor TePixD suppresses conformational change (2011)
  • Author(s): Tanaka, K., Nakasone, Y., Okajima, K., Ikeuchi, M., Tokutomi, S., Terazima, M.
  • Journal Title: FEBS Lett. Volume : 585 Pages : 786-790
  • Peer Reviewed
• [Journal Article] Macromolecular ding Effects on Reactions of TePixD (Tl10078) (2011)
  • Author(s): Toyooka, T., Tanaka, K, Okajima, K., Ikeuchi, M., Tokutomi, S., Terazima, M.
  • Journal Title: Photochem Photobiol. Volume : 87 Pages : 584-589
  • Peer Reviewed
• [Journal Article] Involvement of auxin and brassinosteroid in the regulation of petiole elongation under the shade (2010)
  • Author(s): Kozuka, T., J.Kobayashi, G.Horiguchi, T.Demura, H.Sakakibara, H.Tsukaya, A.Nagatani
  • Journal Title: Plant Physiol. Volume : 153 Pages : 1608-1618
  • Peer Reviewed
• [Journal Article] Arabidopsis PHYTOCHROME INTERACTING FACTOR proteins promote phytochrome B polyubiquitination by COP1 E3 ligase in the nucleus (2010)
  • Author(s): Jang, I.C., R.Henriques, H.S.Seo, A.Nagatani, N.H.Chua
  • Journal Title: Plant Cell Volume : 22 Pages : 2370-2383
  • Peer Reviewed
• [Journal Article] Subcellular sites of the signal transduction and degradation of phytochrome A (2010)
  • Author(s): Toledo-Ortiz, G., Y.Kiryu, J.Kobayashil, Y.Kim, H.G.Nam, N.Mochizuki, A.Nagatani
  • Journal Title: Plant Cell Physiol Volume : 51 Pages : 1648-1660
  • Peer Reviewed
• [Journal Article] Arabidopsis synaptotagmin SYT1, a type I signal-anchor protein, requirestandem C2 domains for delivery to the plasma membrane (2010)
  • Author(s): Kawamura Y, Uemura M
  • Journal Title: Journal of Biological Chemistry Volume : 285 Pages : 23165-23176
  • Peer Reviewed
• [Journal Article] Dynamic compositional changes of detergent-resistant plasma membrane microdomains during plant cold acclimation (2010)
  • Author(s): Uemura M
  • Journal Title: Plant Signaling & Behavior Volume : 5 Pages : 1115-1118
  • Peer Reviewed
• [Journal Article] Phylogenetic footprint of the plant clock system in angiosperms : evolutionary processes of Pseudo-Response Regulators (2010)
  • Author(s): Uemura M
  • Journal Title: BMC Evolutionary Biology Volume : 10 Pages : 126-126
  • Peer Reviewed
• [Journal Article] 植物におけるカルシウム依存的凍結耐性の普遍性.56:71-76 (2010)
  • Author(s): 河村幸男、上村松生
  • Journal Title: 低温生物工学会誌 Volume : 56 Pages : 71-76
  • Peer Reviewed
• [Journal Article] Kinetics of conformational changes of the FKF1-LOV domain upon photoexcitation (2010)
  • Author(s): Nakasone, Y., Zikihara, K., Tokutomi, S., Terazima, M.
  • Journal Title: Biophys.J. Volume : 99 Pages : 3831-3839
  • Peer Reviewed
• [Journal Article] When is the helix conformation restored after the reverse reaction of Phototropin? (2010)
  • Author(s): Kawaguchi, Y., Nakasone, Y., Zikihara, K., Tokutomi, S., Terazima, M.
  • Journal Title: J.Amer.Chem.Soc. Volume : 132 Pages : 8838-8839
  • Peer Reviewed
• [Presentation] The First Step to Understanding Light-Responses in natura. (2016)
  • Author(s): Akira Nagatani, Ryota Otsuki, Yuko Sakurai, Nobuyoshi Mochizuki, Tomomi Suzuki
  • Organizer: 第57回日本植物生理学会年会シンポジウム「The First Step to Understanding Light-Responses in natura.」
  • Place of Presentation: 盛岡、岩手
  • Year and Date: 2016-03-18
  • Int'l Joint Research / Invited
• [Presentation] Inter-organ and inter-tissue communications in the shade avoidance response (2015)
  • Author(s): A. Nagatani
  • Organizer: 7th Asia and Oceania Conference on Photobiology
  • Place of Presentation: Taipei, Taiwan
  • Year and Date: 2015-11-15
  • Int'l Joint Research / Invited
• [Presentation] Spatiotemporal regulation of the shade avoidance response (2015)
  • Author(s): A. Nagatani
  • Organizer: Heidelberg-Bristol-Kyoto Symposium
  • Place of Presentation: Bristol, UK
  • Year and Date: 2015-11-05
  • Int'l Joint Research / Invited
• [Presentation] Spatial control of the shade avoidance response (2015)
  • Author(s): Akira Nagatani, Junko Unten-Kobayashi, Kazumasa Nito, Nobuyoshi Mochizuki, Tomomi Suzuki, Yohichro Hosokawa, Tomoharu Kajiyama, Akihiko Fujii, Hideki Kambara, Masahito Hosokawa, Haruko Takeyama
  • Organizer: 11th International Plant Molecular Biology Congress
  • Place of Presentation: Iguassu Falls, Brazil
  • Year and Date: 2015-10-25
  • Int'l Joint Research / Invited
• [Presentation] Spatiotemporal regulation of the hypocotyl elongation in response to the shade stimulus (2015)
  • Author(s): A. Nagatani
  • Organizer: The International Symposium on Plant Photobiology (ISPP 2015)
  • Place of Presentation: Austin, TX, USA
  • Year and Date: 2015-05-26
  • Int'l Joint Research / Invited
• [Presentation] The Plant Organelles Database (PODB) Version 3: 植物オルガネラデータベースにおける環境応答情報と電子顕微鏡写真を導入した改良 (2014)
  • Author(s): 真野昌二 他
  • Organizer: 第55回日本植物生理学会年会
  • Place of Presentation: 富山大学（富山）
• [Presentation] 光刺激に対する遺伝子発現応答の組織／器官特異性 (2014)
  • Author(s): 長谷あきら 他
  • Organizer: 第55回日本植物生理学会年会
  • Place of Presentation: 富山大学（富山）
• [Presentation] 青色光受容体photの膜局在メカニズム (2014)
  • Author(s): 鈴木友美 他
  • Organizer: 第55回日本植物生理学会年会
  • Place of Presentation: 富山大学（富山）
• [Presentation] シロイヌナズナ芽生えの脱黄化応答におけるメタボローム解析 (2014)
  • Author(s): 小塚俊明 他
  • Organizer: 第55回日本植物生理学会年会
  • Place of Presentation: 富山大学（富山）
• [Presentation] Analysis of plastid signaling in Marchantia (2014)
  • Author(s): 衣幡春映 他
  • Organizer: 第55回日本植物生理学会年会
  • Place of Presentation: 富山大学（富山）
• [Presentation] クリプトクロムはシロイヌナズナにおける多様な低応答の一端を担う (2014)
  • Author(s): 今井裕之 他
  • Organizer: 第55回日本植物生理学会年会
  • Place of Presentation: 富山大学（富山）
• [Presentation] Inter-organ communication network underlying the shade avoidance response (2014)
  • Author(s): Ａｋｉｒａ Ｎａｇａｔａｎｉ
  • Organizer: Bristol-Kyoto Workshop on Plant Environmental Signalling
  • Place of Presentation: Bristrol, UK
  • Year and Date: 2014-09-23 – 2014-09-25
  • Invited
• [Presentation] Inter-organ communications underlying the whole plant response to the shade (2014)
  • Author(s): Ａｋｉｒａ Ｎａｇａｔａｎｉ
  • Organizer: 16th International Congress of Photociology
  • Place of Presentation: Cordoba, Argentina
  • Year and Date: 2014-09-07 – 2014-09-12
  • Invited
• [Presentation] 植物の光応答の分子機構 (2014)
  • Author(s): 長谷あきら
  • Organizer: 第18回日本光生物学協会年会
  • Place of Presentation: 大阪
  • Year and Date: 2014-08-22 – 2014-08-23
  • Invited
• [Presentation] Dynamics of peroxisomes in Arabidopsis thaliana. (2013)
  • Author(s): Nishimura, M.
  • Organizer: PerFuMe kick-off conference on peroxisome formation, function, metabolism.
  • Place of Presentation: Hampshire Plaza（オランダ）
  • Invited
• [Presentation] Spatio-temporal regulation of the shade-avoidance response? (2013)
  • Author(s): A. Nagatani
  • Organizer: The 2013 International Symposium on Plant Photobiology
  • Place of Presentation: The University of Edinburgh（イギリス）
  • Invited
• [Presentation] 芽生え脱黄化応答におけるメタボローム解析 (2013)
  • Author(s): 小塚俊明 他
  • Organizer: 日本植物学会第77回大会
  • Place of Presentation: 北海道大学（北海道）
• [Presentation] フィトクロムAのモジュラー構造 (2013)
  • Author(s): 長谷あきら 他
  • Organizer: 第51回日本生物物理学会年会
  • Place of Presentation: 国立京都国際会館（京都）
  • Invited
• [Presentation] Application of new technologies to the phytochrome study. (2013)
  • Author(s): A. Nagatani
  • Organizer: The 6th Asia and Oceania Conference on Photobiology
  • Place of Presentation: Novotel Sydney Central（オーストラリア）
  • Invited
• [Presentation] Plant responses to light mediated by phytochrome. (2013)
  • Author(s): A. Nagatani
  • Organizer: Swiss-Kyoto Symposium
  • Place of Presentation: ETH Zurich Campus（スイス）
  • Invited
• [Presentation] Spatio-Temporal Regulation of the Shade Avoidance Responses. (2013)
  • Author(s): A. Nagatani
  • Organizer: International Symposium for "Biodiversity & Evolution" project of Excellent Graduate Schools
  • Place of Presentation: 京都大学（京都）
• [Presentation] “How does cotyledonous phytochrome control hypocotyl elongation with a long time lag?” (2012)
  • Author(s): A. Nagatani
  • Organizer: The 4th NIBB-MPIPZ-TLL Symposium “Arabidopsis and Emerging Model Systems”
  • Place of Presentation: 岡崎コンファレンスセンター（愛知）
  • Year and Date: 2012-11-19
• [Presentation] 「フェムト秒レーザーを用いた避陰応答の解析」 (2012)
  • Author(s): 小林淳子 他
  • Organizer: 近畿植物学会
  • Place of Presentation: 近畿大学（奈良）
  • Year and Date: 2012-11-10
• [Presentation] "The modular structure of phytochrome A" (2012)
  • Author(s): A. Nagatani
  • Organizer: 10th International Congress on Plant Molecular Biology
  • Place of Presentation: International Convention Center（韓国）
  • Year and Date: 2012-10-21
• [Presentation] 「植物生理学研究のための超高速レーザー細胞プロセス」 (2012)
  • Author(s): 長谷あきら
  • Organizer: 超短パルスレーザー細胞プロセス研究会
  • Place of Presentation: 奈良先端科学技術大学院大学（奈良）
  • Year and Date: 2012-04-13
• [Presentation] Modular structure of phytochrome A (2012)
  • Author(s): Akira Nagatani
  • Organizer: The 1st International Symposium on Plant Environmental Sensing
  • Place of Presentation: 東大寺総合文化センター(奈良県)(招待講演)
  • Year and Date: 2012-03-19
• [Presentation] フォトトロピンのLOV2領域・N末端側近傍の変異によりキナーゼ活性の抑制機能が失われる (2012)
  • Author(s): 相原悠介, ほか
  • Organizer: 第53回日本植物生理学会年会
  • Place of Presentation: 京都産業大学(京都府)
  • Year and Date: 2012-03-17
• [Presentation] Mg-Chelatase Hサブユニット(CHLH/GUN5)の構造・機能解析を中心とした、プラスチドシグナル伝達の解析 (2012)
  • Author(s): 衣幡春映, ほか
  • Organizer: 第53回日本植物生理学会年会
  • Place of Presentation: 京都産業大学(京都府)
  • Year and Date: 2012-03-16
• [Presentation] フィトクロムAの作用機構の生化学的解析 (2012)
  • Author(s): 後藤一也, ほか
  • Organizer: 第53回日本植物生理学会年会
  • Place of Presentation: 京都産業大学(京都府)
  • Year and Date: 2012-03-16
• [Presentation] MALDI-FTMSを用いたシロイヌナズナ光応答のメタボローム解析 (2012)
  • Author(s): 小塚俊明, ほか
  • Organizer: 第53回日本植物生理学会年会
  • Place of Presentation: 京都産業大学(京都府)
  • Year and Date: 2012-03-16
• [Presentation] 植物青色光受容体フォトトロピシ2の立体構造研究 (2011)
  • Author(s): 中迫雅由、高山裕貴、岩田彩、松井夕花、岡島公司、嘉祥寺谷幸子、徳富哲
  • Organizer: 第24回日本放射光学会年会
  • Place of Presentation: つくば国際会議場(茨城県)
• [Presentation] シロイヌナズナphot1のアミノ酸N476とK475はLOV2によるキナーゼ光制御に関わる (2011)
  • Author(s): 嘉祥寺谷幸子、岡島公司、徳富哲
  • Organizer: 第52回日本植物生理学会年会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] The molecular mechanism of growth regulation by phytochrome (2011)
  • Author(s): Akira Nagatani
  • Organizer: Strategies of Plants against Global Environmental Change
  • Place of Presentation: 倉敷市芸文館(岡山県)(招待講演)
  • Year and Date: 2011-12-09
• [Presentation] フィトクロムの生理応答の時空間的解析 (2011)
  • Author(s): 長谷あきら
  • Organizer: 第84回日本生化学会大会
  • Place of Presentation: 京都国際会館(京都府)(招待講演)
  • Year and Date: 2011-09-21
• [Presentation] The structural basis for phyA-specific functions (2011)
  • Author(s): Akira Nagatani
  • Organizer: 5th Asia and Oceania Conference for Photobiology
  • Place of Presentation: 奈良県新公会堂(奈良県)(招待講演)
  • Year and Date: 2011-07-31
• [Presentation] Spatio-temporal regulatory network controlling stem elongation under the shade (2011)
  • Author(s): Akira Nagatani
  • Organizer: Interplay of Light, Photoperiodism and Circadian Clock Function in Plant Development
  • Place of Presentation: Barcelona, Spain(招待講演)
  • Year and Date: 2011-05-05
• [Presentation] 植物細胞における小胞体の凍結挙動と低温順化の影響 (2011)
  • Author(s): 上村松生、河村幸男
  • Organizer: 第52回日本植物生理学会年会
  • Place of Presentation: 東北大学(宮城県)
  • Year and Date: 2011-03-20
• [Presentation] 凍結機械ストレスに対する単子葉植物の応答とその機構 (2011)
  • Author(s): 上村松生、河村幸男
  • Organizer: 第52回日本植物生理学会年会
  • Place of Presentation: 東北大学(宮城県)
  • Year and Date: 2011-03-20
• [Presentation] 植物の凍結耐性におけるダイナミンタンパク質の機能 (2011)
  • Author(s): 上村松生、河村幸男
  • Organizer: 第52回日本植物生理学会年会
  • Place of Presentation: 東北大学(宮城県)
  • Year and Date: 2011-03-20
• [Presentation] Cold stress induced inhibition of growth and development of plant is linked to intracellular protein trafficking (2011)
  • Author(s): Uemura M
  • Organizer: 第52回日本植物生理学会年会
  • Place of Presentation: 東北大学(宮城県)
  • Year and Date: 2011-03-20
• [Presentation] ブナ花成関連遺伝子FcCO,FcFTの単離と発現解析 (2011)
  • Author(s): 上村松生
  • Organizer: 第61回日本木材学会大会
  • Place of Presentation: 京都大学(京都府)
  • Year and Date: 2011-03-19
• [Presentation] involvement of lov2 Arg427 in light reception of ArAbidopsis phototropin 2 (2010)
  • Author(s): Okajima, K., Fukuoka, M., Katsura, H.
  • Organizer: 国際シロイヌナズナ研究会議
  • Place of Presentation: パシフィコ横浜(神奈川県)
• [Presentation] 植物の青色光受容体フォトトロピシにおいてLOV2のフォトサイクルがキナーゼの光感受性を制御する (2010)
  • Author(s): 岡島公司、嘉祥寺谷幸子、桂ひとみ、福岡翠、徳富哲
  • Organizer: 第16回日本光生物学協会年会
  • Place of Presentation: 大阪大学(大阪府)
• [Presentation] 青色光・緑色光によって可逆的光変換するシアノバクテリオクロムの紫外/可視吸収スペクトル、円二色性スペクトル解析 (2010)
  • Author(s): 吉原静恵、直原一徳、徳富哲
  • Organizer: 第16回日本光生物学協会年会
  • Place of Presentation: 大阪大学(大阪府)
• [Presentation] シロイヌナズナFKF1タンパクLOVドメインにおいて低温光反応で検出されるアニオンラジカルのEPR測定 (2010)
  • Author(s): 直原一徳、Till Biskup、Robert Bittl、徳富哲
  • Organizer: 第16回日本光生物学協会年会
  • Place of Presentation: 大阪大学(大阪府)
• [Presentation] BLUFドメインからLOVドメインへの変換? (2010)
  • Author(s): 西海健悟、田中啓介、岡島公司、徳富哲、寺嶋正秀
  • Organizer: 第4回分子科学討論会
  • Place of Presentation: 大阪大学(大阪府)
• [Presentation] Molecular Dynamics study on the mechanical difference in the LOV2-kinase domain interaction between photo1 and photo2 (2010)
  • Author(s): Zikihara, k., Tokutomi, s., Sakurai, m.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] Determination of the photoreaction product of blue light sensor BLUF protein TePixD (2010)
  • Author(s): Kuroi, K., Tanaka, K., Kimura, Y., Okajima, K., Ikeudhi, M., Tokutomi, S., Terajima, M.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] Replacement of Arg near FMN in LOV2 with Lys lead to shortening of the life time of S390 state in Arabidopsis phototropin (2010)
  • Author(s): Okajima, k., Kasyojiya, s., Tokutomi, s.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] Arabidopsis phot1LOV2-Jα(N/A) mutant shows longer life time of adduct state, S390 (2010)
  • Author(s): Kasyojiya, s., Okajima, k., Tokutomi, s.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] Circular Dichroism spectra of zebrafish Cryptochrome DASH (2010)
  • Author(s): Fukazawa, r., Zikihara, k., Ishikawa, t., Todo, t., Tokutomi, S.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] Molecular basis for the blue/green photoconversion of cyanobacteriochrome SyPixj1 revealed by UV-VIS absorption and circular dichroism (2010)
  • Author(s): Yoshihara, s., Zikihara, k., Tokutomi, s.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] Time-resolved observation of protein-protein interaction between blue-light receptor PixD and response regulator PixE (2010)
  • Author(s): Tanaka, k., Okajima, k., Ikeuchi, m., Tokutomi, s., Terazima, m.
  • Organizer: 第48回日本生物物理学会
  • Place of Presentation: 東北大学(宮城県)
• [Presentation] 青色光受容体フォトトロピシの光感受性は光受容ドメインの活性化状態の寿命で決まる (2010)
  • Author(s): 嘉祥寺谷幸子、岡島公司、徳富哲
  • Organizer: 日本植物学会近畿支部大会
  • Place of Presentation: キャンパスプラザ京都(京都府)
  • Year and Date: 2010-11-20
• [Presentation] Freezing tolerance in plants : physiology, biochemistry and molecular biology (2010)
  • Author(s): Uemura M
  • Organizer: Biology Department Seminar
  • Place of Presentation: The University of South Dakota (Vermillion, SD, USA)(招待講演)
  • Year and Date: 2010-11-08
• [Presentation] Plant adaptation to low temperatures : physiology, biochemistry and molecular biology (2010)
  • Author(s): Uemura M
  • Organizer: Horticulture Department Seminar
  • Place of Presentation: Texas A&M University (College Station, TX,USA)(招待講演)
  • Year and Date: 2010-11-04
• [Presentation] Plasma membrane proteomics and plant cold tolerance (2010)
  • Author(s): Uemura M
  • Organizer: Max-Planck Institute of Molecular Plant Physiology Weekly Seminar
  • Place of Presentation: Max-Planck Institute(Potsdam, Germany)(招待講演)
  • Year and Date: 2010-10-05
• [Presentation] Plasma membrane in plant cold tolerance (2010)
  • Author(s): Uemura M
  • Organizer: INRA-PIAF-UMR Seminar
  • Place of Presentation: INRA (Clermont-Ferrand, France)(招待講演)
  • Year and Date: 2010-09-28
• [Presentation] 種子形成・発芽におけるフィチン酸(イノシトール6リン酸)の動態 (2010)
  • Author(s): 益田陽平
  • Organizer: 日本植物学会第74会大会
  • Place of Presentation: 中部大学(愛知県)(招待講演)
  • Year and Date: 2010-09-11
• [Presentation] オオムギ根から単離した細胞膜小胞のカドミウム収着に対するマグネシウムの影響 (2010)
  • Author(s): 上村松生
  • Organizer: 日本土壌肥料学会2010年度北海道大会
  • Place of Presentation: 北海道大学(北海道)
  • Year and Date: 2010-09-08
• [Presentation] How to get published (2010)
  • Author(s): Uemura M
  • Organizer: The 6th SPPS PhD Student Conference
  • Place of Presentation: Conference Center (Espoo, Finland)(招待講演)
  • Year and Date: 2010-09-04
• [Presentation] シロイヌナズナの避陰応答における器官間光シグナル伝達機構の解析 (2010)
  • Author(s): 小林淳子, ほか
  • Organizer: 第16回日本光生物学協会年会
  • Place of Presentation: 大阪大学銀杏会館(大阪府)
  • Year and Date: 2010-08-11
• [Presentation] Adaptation strategy of temperate herbaceous plants for cold environments : plasma membrane compositions and functions (2010)
  • Author(s): Uemura M, Kawamura Y
  • Organizer: International Symposium on Biodiversity Sciences 2010
  • Place of Presentation: Rubura Oyama (Nagoya, Japan)
  • Year and Date: 2010-08-02
• [Presentation] Structural basis of phytochrome A specific functions (2010)
  • Author(s): Akira Nagatani
  • Organizer: Plant Signalling Mechanisms
  • Place of Presentation: University of Freiburg (Germany)(招待講演)
  • Year and Date: 2010-06-26
• [Presentation] 植物の光応答の研究
  • Author(s): 長谷あきら
  • Organizer: 滋賀県立膳所高等学校生徒向け公開講座
  • Place of Presentation: 京都大学（京都）
  • Invited
• [Presentation] Inter-cellular/tissue/organ communications in plant responses to light stimulus.
  • Author(s): A. Nagatani
  • Organizer: Symposium in Honor of Winslow Briggs
  • Place of Presentation: Stanford University（アメリカ合衆国）
  • Invited
• [Presentation] シロイヌナズナ表皮細胞における力学的刺激に応答した細胞質ゾル蛋白質の動態変化
  • Author(s): 小林幹康 他
  • Organizer: 平成25年度近畿植物学会講演会
  • Place of Presentation: 帝塚山大学（奈良）
• [Presentation] 感じる植物、その仕組みを探る
  • Author(s): 長谷あきら
  • Organizer: 京都大学アカデミックデイ2013
  • Place of Presentation: 京都大学（京都）
  • Invited
• [Presentation] Molecular mechanisms for the shade avoidance response.
  • Author(s): A. Nagatani
  • Organizer: The 2nd Kyoto-Bristrol Symposium 2014
  • Place of Presentation: 京都大学（京都）
  • Invited
• [Book] Sexual Reproduction in Animals and Plants (2014)
  • Author(s): Goto-Yamada, S., S. Mano, and M. Nishimura
  • Total Pages: 480
  • Publisher: Springer Japan
• [Book] 「生き物たちのつづれおり[上]―多様性と普遍性が彩る生物模様―」 (2012)
  • Author(s): 長谷あきら
  • Total Pages: 237
  • Publisher: 京都大学学術出版会
• [Book] Introduction To Sequence and Genome Analysis (2012)
  • Author(s): Mano Shoji
  • Total Pages: 27
  • Publisher: iConcept Press
• [Book] Genetic Engineering-Basics, New Applications and Responsibilities (2012)
  • Author(s): Tanaka Yuji
  • Total Pages: 24
  • Publisher: InTech
• [Remarks] 植物の環境感覚：刺激受容から細胞応答まで
  • URL: http://esplant.net/
• [Remarks] 代表者研究室ホームページ
  • URL: http://physiol2.bot.kyoto-u.ac.jp/HP3/
• [Remarks] 研究分担者研究室ホームページ
  • URL: http://www.nibb.ac.jp/celmech/jp/
• [Remarks] 植物の環境感覚：刺激受容から細胞応答まで
  • URL: http://esplant.net/index.html
• [Remarks] 京都大学大学院理学研究科生物科学専攻植物学系植物生理学分科
  • URL: http://physiol2.bot.kyoto-u.ac.jp/~nagatani/HP3/
• [Remarks] 自然科学研究機構 基礎生物学研究所 高次細胞機構研究部門（西村研究室）
  • URL: http://www.nibb.ac.jp/celmech/jp/Main_frame.html
• [Remarks] 植物の環境感覚：刺激受容から細胞応答まで
  • URL: http://esplant.net/index.html
• [Remarks] 京都大学大学院理学研究科生物科学専攻植物学系植物生理学分科
  • URL: http://physiol2.bot.kyoto-u.ac.jp/~nagatani/HP3/
• [Remarks]
  • URL: http://esplant.net/index.html
• [Remarks]
  • URL: http://esplant.net/index.html
• [Remarks]
  • URL: http://physiol2.bot.kyoto-u.ac.jp/~nagatani/HP3/
• [Remarks]
  • URL: http://www.b.s.osakafu-u.ac.jp/~toxan/home.html
• [Patent(Industrial Property Rights)] The Method for Producing plant body granted freezing tolerance, and utilization thereof (2010)
  • Inventor(s): Uemura M
  • Industrial Property Rights Holder: Iwate University
  • Filing Date: 2010-11-17
  • Application Year: 2010
  • Overseas