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Chemical biology using natural products

Administrative Group

Project AreaChemical Biology using bioactive natural products as specific ligands: identification of molecular targets and regulation of bioactivity
Project/Area Number 23102001
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionTohoku University

Principal Investigator

UEDA Minoru  東北大学, 理学研究科, 教授 (60265931)

Co-Investigator(Kenkyū-buntansha) 入江 一浩  京都大学, (連合)農学研究科(研究院), 教授 (00168535)
渡邉 秀典  東京大学, 農学生命科学研究科, 教授 (00202416)
品田 哲郎  大阪市立大学, 理学(系)研究科(研究院), 教授 (30271513)
小林 資正  大阪大学, 薬学研究科(研究院), 教授 (40116033)
叶 直樹  東北大学, 薬学研究科(研究院), 准教授 (40317293)
岡本 隆一  東京医科歯科大学, 学内共同利用施設等, 教授 (50451935)
松永 茂樹  東京大学, 農学生命科学研究科, 教授 (60183951)
井本 正哉  慶應義塾大学, 理工学部, 教授 (60213253)
半田 宏  東京医科大学, 医学部, 教授 (80107432)
渡辺 肇  大阪大学, 工学(系)研究科(研究院), 教授 (80212322)
佐々木 誠  東北大学, 生命科学研究科, 教授 (80235267)
木越 英夫  筑波大学, 数理物質科学研究科(系), 教授 (90169839)
西川 俊夫  名古屋大学, 生命農学研究科, 教授 (90208158)
石橋 正己  千葉大学, 薬学研究科(研究院), 教授 (90212927)
Project Period (FY) 2011-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥152,620,000 (Direct Cost: ¥117,400,000、Indirect Cost: ¥35,220,000)
Fiscal Year 2015: ¥32,370,000 (Direct Cost: ¥24,900,000、Indirect Cost: ¥7,470,000)
Fiscal Year 2014: ¥32,370,000 (Direct Cost: ¥24,900,000、Indirect Cost: ¥7,470,000)
Fiscal Year 2013: ¥34,190,000 (Direct Cost: ¥26,300,000、Indirect Cost: ¥7,890,000)
Fiscal Year 2012: ¥33,930,000 (Direct Cost: ¥26,100,000、Indirect Cost: ¥7,830,000)
Fiscal Year 2011: ¥19,760,000 (Direct Cost: ¥15,200,000、Indirect Cost: ¥4,560,000)
Keywords天然物 / ケミカルバイオロジー / 標的同定 / 天然物化学 / 天然物リガンド / 国際交流(ドイツ) / 国際交流(米国) / 国際交流(韓国) / 国際交流(スウェーデン) / 異分野融合 / 国際研究者交流(米国) / 国際研究者交流(中国) / 国際研究者交流(韓国) / 天然物ケミカルバイオロジー / 分子設計
Outline of Final Research Achievements

This research program realized the target ID of many natural products. This can be attributed to the application of beads technology as well as so many trial (and error) of novel methods. The results revealed that a natural product is multifunctional and have plural targets including their off-targets, that is like a bunch of keys, not a canonical concept, lock-and-key. Our growing knowledge on the mode of action of natural product moves to the next step.

Report

(6 results)
  • 2016 Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (41 results)

All 2017 2016 2015 2014 2013 2012 2011 Other

All Journal Article (20 results) (of which Peer Reviewed: 19 results,  Open Access: 3 results,  Acknowledgement Compliant: 6 results) Presentation (14 results) (of which Int'l Joint Research: 1 results,  Invited: 13 results) Book (2 results) Remarks (1 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results) Funded Workshop (2 results)

  • [Journal Article] Design and synthesis of a second-generation ligand-tethered calcium indicator for plant cell biology based on the fundamental analyses of the structure and physical property2017

    • Author(s)
      Y. Takaoka, M. Imai, M. Shigenaga, M. Ueda
    • Journal Title

      Tetrahedron

      Volume: 73

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Covalent cross-linking between cellulose chains by the plant cell-wall enzyme AtXTH32017

    • Author(s)
      N. Shinohara, N. Sunagawa, S. Tamura, M. Ueda, K. Igarashi, K. Nishitani
    • Journal Title

      Sci. Rep.

      Volume: 7

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] AtSWEET13 and AtSWEET14 regulate gibberellin-mediated physiological processes2016

    • Author(s)
      Y. Kanno, T. Oikawa, Y. Chiba, Y. Ishimaru, T. Shimizu, N. Sano, T. Koshiba, Y. Kamiya, M. Ueda, M. Seo
    • Journal Title

      Nature Commun.

      Volume: 7 Issue: 1 Pages: 1-11

    • DOI

      10.1038/ncomms13245

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The jasmonate-responsive GTR1 transporter is required for gibberellin-mediated stamen development in Arabidopsis2015

    • Author(s)
      H. Saito, T. Oikawa, S. Hamamoto, Y. Ishimaru, T. Utsumi, J. Chen, M. Kanamori, Y. Sasaki-Sekimoto, M. Shimojima, S. Masuda, Y. Kamiya, M. Seo, N. Uozumi, M. Ueda, H. Ohta, A
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 6095-6095

    • DOI

      10.1038/ncomms7095

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Total synthesis, stereochemical reassignment, and biological evaluation of (-)-lyngbyaloside B2015

    • Author(s)
      H. Fuwa, Y. Okuaki, N. Yamagata, M. Sasaki
    • Journal Title

      Angewandte Chemie - International Edition

      Volume: 54 Pages: 868-873

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification of the target protein of agelasine D, a marine sponge diterpene alkaloid, as an anti-dormant mycobacterial substance2014

    • Author(s)
      M. Arai, Y. Yamano, A. Setiawan, M. Kobayashi
    • Journal Title

      Chembiochem

      Volume: 15 Pages: 117-123

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Xanthohumol suppresses oestrogen-signalling in breast cancer through the inhibition of BIG3-PHB2 interactions2014

    • Author(s)
      T. Yoshimaru, M. Komatsu, E. Tashiro, M. Imoto, H. Osada, Y. Miyoshi, J. Honda, M. Sasa, T. Katagiri
    • Journal Title

      Scientific reports

      Volume: 4 Pages: 7355-7355

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Inhibition of microtubule assembly by a complex of actin and antitumof macrolide aplyronine A.2013

    • Author(s)
      Kita M, Hirayama Y, Yoneda K, Yamagishi K, Chinen T, Usui T, Sumiya E, Uesugi M, Kioshi H.
    • Journal Title

      Journal of American Chemical Society

      Volume: vol. 135 Issue: 48 Pages: 18089-18095

    • DOI

      10.1021/ja406580w

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Concise synthesis and biological assessment of (+)-neopeltolide and a 16-member stereoisomer library of 8,9-dehydroneopeltolide: Identification of pharmacophoric elements2013

    • Author(s)
      H. Fuwa, M. Kawakami, K. Noto, T. Muto, Y. Suga, K. Konoki, M. Yotsu-Yamashita, and M. Sasaki
    • Journal Title

      Chem. Eur.J.

      Volume: 19 Issue: 25 Pages: 8100-8110

    • DOI

      10.1002/chem.201300664

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An unsaturated aliphatic alcohol as a natural ligand for a mouse odorant receptor2013

    • Author(s)
      K. Yoshikawa, H. Nakagawa, N. Mori, H. Watanabe, K. Touhara
    • Journal Title

      Nature Chemical Biology

      Volume: 9 Issue: 3 Pages: 160-162

    • DOI

      10.1038/nchembio.1164

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Xylogranin B: a potent Wnt signal inhibitory limonoid from Xylocarpus granatum2013

    • Author(s)
      K. Toume, K. Kamiya, M. A. Arai, N. Mori, S. K. Sadhu, F. Ahmed, M. Ishibashi
    • Journal Title

      Org. Lett.

      Volume: 15 Issue: 23 Pages: 6106-6109

    • DOI

      10.1021/ol4029995

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An improved fluorogenic NAD(P)^+ detection method using 2-acetylbenzofuran : its origin and application2013

    • Author(s)
      Takashi Moriya, Ayano Kawamata, Yusuke Takahashi, Yoshiharu Iwabuchi and Naoki Kanoh
    • Journal Title

      Chemical Communications

      Volume: 49巻 Issue: 98 Pages: 11500-11502

    • DOI

      10.1039/c3cc47264g

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Vitamin K2 Covalently Binds to Bak and Induces Bak-Mediated Apoptosis2013

    • Author(s)
      S. Karasawa, M. Azuma, T. Kasama, S. Sakamoto, Y. Kabe, T. Imai, Y. Yamaguchi, K. Miyazawa, and H. Handa
    • Journal Title

      Mol. Pharmacol.

      Volume: 83 Pages: 613-620

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hybrid Stereoisomers of Compact Molecular Probes Based on Jasmonic Acid Glucoside: Syntheses and Biological Evaluations,2012

    • Author(s)
      M. Ueda, G. Yang, Y. Ishimaru, S. Tamura, T. Itabashi, K. Kiyota, S. Kuwahara, S. Inomata, M. Shoji, T. Sugai
    • Journal Title

      Bioorg. Med. Chem.,

      Volume: 20 Pages: 5832-5843

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure#8211;activity studies on the spiroketal moiety of a simplified analog of debromoaplysiatoxin with antiproliferative activity2012

    • Author(s)
      M. Kikumori, R. C. Yanagita, H. Tokuda, N. Suzuki, H. Nagai, K. Suenaga, K. Irie
    • Journal Title

      J. Med. Chem.

      Volume: 55 Pages: 5614-5626

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Total Synthesis and Complete Stereostructure of Gambieric Acid A2012

    • Author(s)
      H. Fuwa, K. Ishigai, K. Hashizume, M. Sasaki
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 134 Pages: 11984-11987

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interactions of the Antitumor Macrolide Aplyronine A with Actin and Actin-Related Proteins Established by Its Versatile Photoaffinity Derivatives2012

    • Author(s)
      M. Kita, Y. Hirayama, K. Yamagishi, K. Yoneda, R. Fujisawa, H. Kigoshi
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 134 Pages: 20314-20317

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Cell selective targeting of a simian virus 40 virus-like particle conjugated to epidermal growth factor2011

    • Author(s)
      Y.Kitai, H.Fukuda, T.Enomoto, Y.Asakawa, T.Suzuki, S.Inouye, H.Handa
    • Journal Title

      J.Biotechnol.

      Volume: 155 Issue: 2 Pages: 251-256

    • DOI

      10.1016/j.jbiotec.2011.06.030

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of 14-3-3 Proteins in the Second Epidermal Growth Factor-induced Wave of Rac1 Activation in the Process of Cell Migration2011

    • Author(s)
      Hiroki Kobayashi, Yusuke Ogura, Masato Sawada, Ryoji Nakayama, Kei Takano, Yusuke Minato, Yasushi Takemoto, Etsu Tashiro, Hidenori Watanabe, Masaya Imoto
    • Journal Title

      Journal of Biological Chemistry

      Volume: 286 Issue: 45 Pages: 39259-39268

    • DOI

      10.1074/jbc.m111.255489

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] "Click-made" biaryl-linker improving efficiency in protein labelling for the membrane target protein of a bioactive compound2011

    • Author(s)
      Y.Nakamura, S.Inomata, M.Ebine, Y.Manabe, I.Iwakura, M.Ueda
    • Journal Title

      Org.Biomol.Chem.

      Volume: 9 Issue: 1 Pages: 83-85

    • DOI

      10.1039/c0ob00843e

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Plant Chemical Biology using Bioactive Natural Products2016

    • Author(s)
      Minoru Ueda
    • Organizer
      RIKEN-Max Planck Joint Research Center Fifth Annual Symposium
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      2016-04-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ジャスモン酸類のケミカルバイオロジー2015

    • Author(s)
      上田 実
    • Organizer
      日本農芸化学会2015年度大会
    • Place of Presentation
      岡山大学
    • Year and Date
      2015-03-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 植物天然毒素コロナチンの気孔開口作用解明を目指した植物細胞のin vivoラマンイメージング2014

    • Author(s)
      上田 実
    • Organizer
      最先端光計測とライフサイエンスの近未来
    • Place of Presentation
      東北大学
    • Year and Date
      2014-05-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Expansion from chemical target identification to drug discovery2014

    • Author(s)
      Hiroshi Handa
    • Organizer
      Thalidomide Embryopathy Conference
    • Place of Presentation
      Geneva, Switzerland
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] CHEMICAL BIOLOGY OF PLANT AND ANIMAL HORMONES: “GLYCOSYLATION SWITCHING”2014

    • Author(s)
      Minoru Ueda
    • Organizer
      25th Mona Symposium
    • Place of Presentation
      Kingston, Jamaica
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] "Glycosylation Switching"による天然物リガンドの活性制御2013

    • Author(s)
      上田 実
    • Organizer
      日本化学会第93春期年会特別企画
    • Place of Presentation
      立命館大学BKC
    • Year and Date
      2013-03-22
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Synthesis and biological activities of the simplified analogs of a natural PKC ligand aplysiatoxin2013

    • Author(s)
      Kazuhiro irie
    • Organizer
      International Symposium on Natural Products Chemistry and Chemical Biology 2013
    • Place of Presentation
      , Nagoya, Japan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Metabolomic Identification of the Target of Microbial Probes Modulating Cellular Responses2013

    • Author(s)
      Masaya Imoto,
    • Organizer
      , The 2nd International Symposium on Chemical Biology of Natural Products.
    • Place of Presentation
      Yokohama Japan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Chemical Biology of Glycoside Natural Products2013

    • Author(s)
      Minoru Ueda
    • Organizer
      RACI NSW Natural Products Symposium 2013
    • Place of Presentation
      Sydney, Australia
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 巨大複雑ポリエーテル天然物の全合成と機能解析2013

    • Author(s)
      佐々木 誠
    • Organizer
      日本農芸化学会2013年度大会シンポジウム
    • Place of Presentation
      東北大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 海洋産抗腫瘍性物質の生物有機化学2013

    • Author(s)
      木越英夫
    • Organizer
      第23回神奈川大学平塚シンポジウム
    • Place of Presentation
      神奈川大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 眠る植物と食虫植物の科学-不思議な生物現象の化学-2012

    • Author(s)
      上田実
    • Organizer
      未来の科学者養成講座の公開講演会
    • Place of Presentation
      福岡
    • Year and Date
      2012-02-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] 「ケミカルによる生命の謎への挑戦」(Challenge to the mystery of life by chemical)2012

    • Author(s)
      半田 宏
    • Organizer
      日本糖鎖コンソーシアム(JCGG)シンポジウム
    • Place of Presentation
      東京コンファレンスセンター
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] プロテインキナーゼCを標的とした新規抗がん剤シーズ2012

    • Author(s)
      入江 一浩
    • Organizer
      京都大学新技術説明会(招待講演)
    • Place of Presentation
      JST東京別館ホール(東京、市ヶ谷)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] CSJカレントレビュー19 生物活性分子のケミカルバイオロジー:標的同定と作用機構2015

    • Author(s)
      上田 実他
    • Total Pages
      208
    • Publisher
      化学同人
    • Related Report
      2014 Annual Research Report
  • [Book] A. Volkov eds. “Plant Electrophysiology Signaling and Responses”2012

    • Author(s)
      Y. Ishimaru, S. Hamamoto, N. Uozumi, and M. Ueda
    • Publisher
      Springer-Verlag
    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://chembiochem.jp/

    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] 新規アプリシアトキシン誘導体及びそれを含有する抗がん剤2013

    • Inventor(s)
      入江一浩,菊森将之,蒲池弘明,柳田 亮,中川 優
    • Industrial Property Rights Holder
      入江一浩,菊森将之,蒲池弘明,柳田 亮,中川 優
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013-04-16
    • Related Report
      2013 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 新規アプリシアトキシン誘導体及びそれを含有する抗がん剤2012

    • Inventor(s)
      入江一浩,菊森将之,蒲池弘明,柳田 亮,中川 優
    • Industrial Property Rights Holder
      入江一浩,菊森将之,蒲池弘明,柳田 亮,中川 優
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2012-092842
    • Filing Date
      2012-04-16
    • Related Report
      2012 Annual Research Report
  • [Funded Workshop] Symposium #237"Molecualr function of natural products: advances towards chemical biology" in Paciifichem 20152015

    • Place of Presentation
      Honolulu, Hawaii, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
  • [Funded Workshop] Joint international session with 10th annual meeting of Japanese Society for Chemical Biology2015

    • Place of Presentation
      Sendai, Japan
    • Related Report
      2015 Annual Research Report

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Published: 2011-08-01   Modified: 2019-07-29  

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