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The development of fundamental bioimaging technologies for comprehensive understanding

Planned Research

Project AreaResonance Biology for Innovative Bioimaging
Project/Area Number 15H05948
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Atsushi Miyawaki  国立研究開発法人理化学研究所, 脳神経科学研究センター, チームリーダー (80251445)

Co-Investigator(Kenkyū-buntansha) 牧 昌次郎  電気通信大学, 大学院情報理工学研究科, 准教授 (20266349)
小松 直貴  国立研究開発法人理化学研究所, 脳神経科学研究センター, 基礎科学特別研究員 (30737440)
下薗 哲  国立研究開発法人理化学研究所, 脳神経科学研究センター, 研究員 (40391982)
阪上 朝子  国立研究開発法人理化学研究所, 脳神経科学研究センター, 研究員 (90462689)
濱 裕  国立研究開発法人理化学研究所, 脳科学総合研究センター, 専門職研究員 (30261796)
Project Period (FY) 2015-06-29 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥241,930,000 (Direct Cost: ¥186,100,000、Indirect Cost: ¥55,830,000)
Fiscal Year 2019: ¥46,410,000 (Direct Cost: ¥35,700,000、Indirect Cost: ¥10,710,000)
Fiscal Year 2018: ¥46,540,000 (Direct Cost: ¥35,800,000、Indirect Cost: ¥10,740,000)
Fiscal Year 2017: ¥46,540,000 (Direct Cost: ¥35,800,000、Indirect Cost: ¥10,740,000)
Fiscal Year 2016: ¥46,410,000 (Direct Cost: ¥35,700,000、Indirect Cost: ¥10,710,000)
Fiscal Year 2015: ¥56,030,000 (Direct Cost: ¥43,100,000、Indirect Cost: ¥12,930,000)
Keywordsバイオイメージング / 共鳴エネルギ移動 / 細胞周期 / レチノイン酸 / 固定イメージング / 共鳴エネルギー移動 / 個体イメージング / 固体イメージング
Outline of Final Research Achievements

Mitophagy removes dysfunctional mitochondria through lysosomal degradation. Thorough investigation of the behaviors and fates of fluorescent proteins inside lysosomes enabled us to develop an indicator for mitophagy. Large-scale image-based high-throughput screening led to the discovery of a hit compound that induces selective mitophagy of damaged mitochondria. In a mouse model of Parkinson’s disease, we found that dopaminergic neurons selectively failed to execute mitophagy that promoted their survival within lesions. We performed directed evolution of firefly luciferase using a red-shifted and highly deliverable luciferin analogue to establish AkaBLI, an all-engineered bioluminescence in vivo imaging system. AkaBLI produced 100 to 1,000-fold brighter emission in vivo than conventional systems, allowing non-invasive visualization of single cells inside deep internal organs of freely moving animals.

Academic Significance and Societal Importance of the Research Achievements

上記いずれの開発技術もバイオイメージングの課題に真正面から取り組んで創り上げたもので各分野における可視化技術を革新した。学術分野における普及はもちろん、産業分野への伝播も意図されている。実際、mito-SRAIは武田薬品工業で創薬ツールとして導入され、AkaBLIは和光純薬で販売されている。他にも顕微鏡球面収差自動補正装置Deep-C(BBRC 2018)はオリンパスと、液相分離の原理に基づく生体分子相互作用検出技術Fluoppi(Sci. Rep. 2017)は医学生物学研究所との共同研究である。

Report

(6 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (53 results)

All 2020 2019 2018 2017 2016 2015 Other

All Int'l Joint Research (12 results) Journal Article (11 results) (of which Int'l Joint Research: 5 results,  Peer Reviewed: 10 results,  Open Access: 6 results,  Acknowledgement Compliant: 1 results) Presentation (25 results) (of which Int'l Joint Research: 19 results,  Invited: 19 results) Book (2 results) Remarks (1 results) Funded Workshop (2 results)

  • [Int'l Joint Research] University of California, Los Angeles/California Institute of Techonology/MIT(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] MRC/Lancaster University/Univeristy of East Anglia(英国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Vienna University of Technology/Medical University of Vienna(オーストリア)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Ludwig Maximilians University of Munich/Munich Cluster for Systems Neurology(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] The University of Melbourne(オーストラリア)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of California, Los Angeles/California Institute of Technology/MIT(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] MRC/Lancaster University/University of East Anglia(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Vienna University of Technology/Medical University of Vienna(オーストリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Ludwig Maximilians University of Munich/Munich Cluster for Systems Neurology(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] The University of Melbourne(オーストラリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Visualizing and modulating mitophagy for therapeutic studies of neurodegeneration2020

    • Author(s)
      Katayama H., Hama H., Nagasawa K., Kurokawa H., Sugiyama M., Ando R., Funata M., Yoshida N., Homma M., Nishimura T., Takahashi M., Ishida Y., Hioki H., Tsujihata Y., Miyawaki A.
    • Journal Title

      Cell

      Volume: in press

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Voices in methods development2019

    • Author(s)
      Anikeeva P. et. al.
    • Journal Title

      Nature Methods

      Volume: 16 Issue: 10 Pages: 945-951

    • DOI

      10.1038/s41592-019-0585-6

    • Related Report
      2019 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Moments reconstruction and local dynamic range compression of high order superresolution optical fluctuation imaging2019

    • Author(s)
      Yi X., Son S., Ando R., Miyawaki A., Weiss S.
    • Journal Title

      Biomed. Opt. Express

      Volume: 10 Issue: 5 Pages: 2430-2445

    • DOI

      10.1364/boe.10.002430

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] G9a-dependent histone methylation can be induced in G1 phase of cell cycle.2018

    • Author(s)
      Fukuda M, Sakaue-Sawano A, Shimura C, Tachibana M, Miyawaki A, Shinkai Y.
    • Journal Title

      Sci. Rep.

      Volume: 9 Issue: 1 Pages: 956-956

    • DOI

      10.1038/s41598-018-37507-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.2018

    • Author(s)
      Mano T, Albanese A, Dodt HU, Erturk A, Gradinaru V, Treweek JB, Miyawaki A, Chung K, Ueda HR.
    • Journal Title

      J. Neurosci.

      Volume: 38 Issue: 44 Pages: 9330-9337

    • DOI

      10.1523/jneurosci.1677-18.2018

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Infrared spectroscopy reveals multi-step multi-timescale photoactivation in the photoconvertible protein archetype dronpa2018

    • Author(s)
      Laptenok SP, Gil AA, Hall CR, Lukacs A, Iuliano JN, Jones GA, Greetham GM, Donaldson P, Miyawaki A, Tonge PJ, Meech SR.
    • Journal Title

      Nat. Chem.

      Volume: 10 Issue: 8 Pages: 845-852

    • DOI

      10.1038/s41557-018-0073-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A spherical aberration-free microscopy system for live brain imaging2018

    • Author(s)
      Ue Yoshihiro、Monai Hiromu、Higuchi Kaori、Nishiwaki Daisuke、Tajima Tetsuya、Okazaki Kenya、Hama Hiroshi、Hirase Hajime、Miyawaki Atsushi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 500 Issue: 2 Pages: 236-241

    • DOI

      10.1016/j.bbrc.2018.04.049

    • NAID

      40021394427

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Single-cell bioluminescence imaging of deep tissue in freely moving animals.2018

    • Author(s)
      Iwano S, Sugiyama M, Hama H, Watakabe A, Hasegawa N, Kuchimaru T, Tanaka KZ, Takahashi M, Ishida Y, Hata J, Shimozono S, Namiki K, Fukano T, Kiyama M, Okano H, Kizaka-Kondoh S, McHugh TJ, Yamamori T, Hioki H, Maki S, Miyawaki A.
    • Journal Title

      Science

      Volume: 359 Issue: 6378 Pages: 935-939

    • DOI

      10.1126/science.aaq1067

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A dual-ligand-modulable fluorescent protein based on UnaG and calmodulin.2018

    • Author(s)
      Shitashima Y, Shimozawa T, Asahi T, Miyawaki A.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 496 Issue: 3 Pages: 872-879

    • DOI

      10.1016/j.bbrc.2018.01.134

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetically Encoded Tools for Optical Dissection of the Mammalian Cell Cycle2017

    • Author(s)
      Sakaue-Sawano Asako、Yo Masahiro、Komatsu Naoki、Hiratsuka Toru、Kogure Takako、Hoshida Tetsushi、Goshima Naoki、Matsuda Michiyuki、Miyoshi Hiroyuki、Miyawaki Atsushi
    • Journal Title

      Molecular Cell

      Volume: 68 Issue: 3 Pages: 626-640

    • DOI

      10.1016/j.molcel.2017.10.001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic visualization of protein interactions harnessing liquid phase transitions.2017

    • Author(s)
      Watanabe T, Seki T, Fukano T, Sakaue-Sawano A, Karasawa S, Kubota M, Kurokawa H, Inoue K, Akatsuka J, Miyawaki A.
    • Journal Title

      Science Report

      Volume: 7 Issue: 1 Pages: 46380-46380

    • DOI

      10.1038/srep46380

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] The evolution of new frontiers in bioimaging technology with naturally luminescent proteins that has decoded the regulatory logic of space and time in biological events2019

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      Resonance Bio International Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cruising inside cells2019

    • Author(s)
      宮脇敦史
    • Organizer
      第6回板橋オプトフォーラム
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Interplay between Light and Life 光と生命との相互作用2019

    • Author(s)
      宮脇敦史
    • Organizer
      Tokyo Breast Cancer Meeting 2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Genetically encoded luminescent tools for life sciences2019

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      EMBO | EMBL Symposium: Seeing is Believing
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetically encoded tools for brain studies2019

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      IBRO 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualization of retinoic acid gradients2019

    • Author(s)
      下薗哲
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] RAome - omics of RA2019

    • Author(s)
      Satoshi Shimozono
    • Organizer
      Resonance Bio International Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Unraveling mTORC1 activity dynamics and its biological roles in cell cycle progression2019

    • Author(s)
      Naoki Komatsu
    • Organizer
      Resonance Bio International Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Visualization of Homeostatic Disturbances in Space2019

    • Author(s)
      Asako Sakaue-Sawano
    • Organizer
      Resonance Bio International Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] AkaBLI: An all-engineered bioluminescence system for highly sensitive in vivo imaging2019

    • Author(s)
      Satoshi Iwano
    • Organizer
      Resonance Bio International Symposium
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Luminescent protein applications in research, medicine, and bioengineering2019

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      The 9th BRI International Symposium on Visualization of brain network and function
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cruising inside cells-A graduate fantasy at IPR in the 80’s-2018

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      大阪大学蛋白質研究所創設60周年記念国際シンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 光と生命2018

    • Author(s)
      宮脇敦史
    • Organizer
      第39回日本炎症・再生医学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Genetically encoded tools based on luminescent proteins2018

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      WCP2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cruising inside the cells2017

    • Author(s)
      宮脇敦史
    • Organizer
      第90回日本薬理学会年会
    • Place of Presentation
      長崎ブリックホール(長崎県長崎市)
    • Year and Date
      2017-03-17
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Cruising inside cells: New Fluorescent Probes and New Perspectives in Bioscience2017

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      2017 SGP Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetically encoded tools for brain analysis2017

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      a KIBM symposium on imaging the brain
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Genetically encoded tools based on fluorescent proteins2017

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      EMBL Symposia on Seeing is Believing
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Fluorescent protein applications in research, medicine, and bioengineering2016

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      International conference on Labeling & Nanoscopy
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2016-10-31
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 巡航分子スパイ2016

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      第3回京都大学-稲盛財団合同京都賞シンポジウム
    • Place of Presentation
      京都大学(京都府京都市)
    • Year and Date
      2016-07-09
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Fluorescent Protein2016

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      19th International Symposium on Bioluminescence & Chemiluminescence
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2016-06-02
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Flourescent Protein Technologies for Neurosciences2015

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      The Thirty-Seventh Annual W. Alden Spencer Award and Lecture
    • Place of Presentation
      New York, USA
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Genetically encoded tools for brain analysis2015

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      EMBL symposium on Seeing is Believing - Imaging the Processes of Life, invited speaker
    • Place of Presentation
      Heidelberg, Germany
    • Year and Date
      2015-10-08
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualizing developmentally programmed endoreplication in mammals and drug-induced cell cycle modulation using ubiquitin oscillators2015

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      EMBO Cell Cycle Workshop 2015
    • Place of Presentation
      Budapest, Hungary
    • Year and Date
      2015-09-05
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cruising Inside X2015

    • Author(s)
      Atsushi Miyawaki
    • Organizer
      PicoQuant to hold 21st International Single Molecule Workshop
    • Place of Presentation
      Berlin, Germany
    • Year and Date
      2015-09-03
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Book] 組織の透明化技術. 生体の科学2017

    • Author(s)
      濱裕、日置寛之、並木香奈、星田哲志、黒川裕、宮脇敦史
    • Total Pages
      94
    • Publisher
      生体の科学
    • Related Report
      2016 Annual Research Report
  • [Book] 脳透明化技術の現状と今後の発展 ―ScaleS法に焦点を当てて―2017

    • Author(s)
      日置寛之、濱裕、孫在隣、黄晶媛、並木香奈、星田哲志、黒川裕、宮脇敦史
    • Total Pages
      42
    • Publisher
      日本薬理学雑誌
    • Related Report
      2016 Annual Research Report
  • [Remarks] 共鳴誘導で革新するバイオイメージング

    • URL

      https://reso.m.ehime-u.ac.jp/

    • Related Report
      2017 Annual Research Report
  • [Funded Workshop] Resonance Bio International Symposium2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] Symposium in the 92nd annual meeting of the JBS2019

    • Related Report
      2019 Annual Research Report

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Published: 2015-07-02   Modified: 2023-03-16  

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