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Analysis of the singularity cells controlling the pattern formation of multicellular system

Planned Research

Project AreaSingularity biology
Project/Area Number 18H05415
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionThe University of Tokushima

Principal Investigator

HORIKAWA Kazuki  徳島大学, 先端研究推進センター, 教授 (70420247)

Co-Investigator(Kenkyū-buntansha) 竹本 龍也  徳島大学, 先端酵素学研究所, 教授 (30443899)
Project Period (FY) 2018-06-29 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥128,960,000 (Direct Cost: ¥99,200,000、Indirect Cost: ¥29,760,000)
Fiscal Year 2022: ¥25,870,000 (Direct Cost: ¥19,900,000、Indirect Cost: ¥5,970,000)
Fiscal Year 2021: ¥26,910,000 (Direct Cost: ¥20,700,000、Indirect Cost: ¥6,210,000)
Fiscal Year 2020: ¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2019: ¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2018: ¥26,650,000 (Direct Cost: ¥20,500,000、Indirect Cost: ¥6,150,000)
Keywords自己組織化 / 生物物理 / cAMP / パターン形成 / ゲノム編集 / 細胞周期 / 社会性アメーバ / 光メモリー
Outline of Final Research Achievements

Developmental pattern formation is an excellent model of singularity phenomena. By using a newly developed transscale scope, we investigated the onset dynamics of collective signaling in the population of chemotacting cells at 1-cell resolution. A large-scale 1-cell tracking revealed that the cell population is highly heterogeneous in their signal-relaying ability where a small number of cells, called leaders and followers, functioned as a signal initiator and amplifier, respectively. Our mathematical simulation incorporating experimentally observed features demonstrated that such cellular heterogeneity is the key determinant to developing the spiral-shaped signaling pattern, whose initiation mechanisms have remained long elusive. Associated development of new technologies, such as a semi-automated detection of signaling cells and optical highlighters for leaders and followers, would benefit the analysis of other models for singularity phenomena in physiological and pathological cases.

Academic Significance and Societal Importance of the Research Achievements

研究開始時には「システム全体の挙動がレア細胞に支配される」というシンギュラリティ現象は作業仮説でしかなかったが、本件研究によって細胞集団内に大事でレアな細胞の存在すること、こうしたレア細胞の挙動が細胞集団システム全体の挙動を大きく変えることが明らかになった点において大きな学術的意義がある。本研究により確かめられたシンギュラリティ現象は、正常発生における様々なパターン形成や、がんや神経変性などの疾患にも関与する可能性がある。様々なシンギュラリティ研究を加速させうる様々な基盤技術を開発できたは大きな社会的な意義を有するといえる。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (38 results)

All 2023 2022 2021 2020 2019 2018

All Journal Article (27 results) (of which Peer Reviewed: 26 results,  Open Access: 22 results) Presentation (8 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results) Book (3 results)

  • [Journal Article] Intercellular exchange of Wnt ligands reduces cell population heterogeneity during embryogenesis2023

    • Author(s)
      Yudai Hatakeyama, Nen Saito, Yusuke Mii, Ritsuko Takada, Takuma Shinozuka, Tatsuya Takemoto, Honda Naoki, Shinji Takada
    • Journal Title

      Nature Communications

      Volume: 14 Pages: 1-16

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Binding of LAG-3 to stable peptide-MHC class II limits T?cell function and suppresses autoimmunity and anti-cancer immunity2022

    • Author(s)
      Maruhashi Takumi、Sugiura Daisuke、Okazaki Il-mi、Shimizu Kenji、Maeda Takeo K.、Ikubo Jun、Yoshikawa Harunori、Maenaka Katsumi、Ishimaru Naozumi、Kosako Hidetaka、Takemoto Tatsuya、Okazaki Taku
    • Journal Title

      Immunity

      Volume: - Issue: 5 Pages: 912-924

    • DOI

      10.1016/j.immuni.2022.03.013

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Live Imaging of cAMP Signaling in D. discoideum Based on a Bioluminescent Indicator, Nano-lantern (cAMP)2022

    • Author(s)
      Horikawa Kazuki、Nagai Takeharu
    • Journal Title

      Methods in Molecular Biology

      Volume: 2483 Pages: 231-240

    • DOI

      10.1007/978-1-0716-2245-2_14

    • ISBN
      9781071622445, 9781071622452
    • Related Report
      2022 Annual Research Report
  • [Journal Article] C-type Natriuretic Peptide-induced PKA Activation Promotes Endochondral Bone Formation in Hypertrophic Chondrocytes2022

    • Author(s)
      Keisho Hirota, Tsuyoshi Hirashima, Kazuki Horikawa, Akihiro Yasoda, Michiyuki Matsuda
    • Journal Title

      Endocrinology

      Volume: 163(3) Issue: 3 Pages: 1-12

    • DOI

      10.1210/endocr/bqac005

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of a screening system for agents that modulate taste receptor expression with the CRISPR-Cas9 system in medaka2022

    • Author(s)
      Beppu Kana、Tsutsumi Rie、Ansai Satoshi、Ochiai Nana、Terakawa Mai、Mori Marie、Kuroda Masashi、Horikawa Kazuki、Tomoi Takumi、Sakamoto Joe、Kamei Yasuhiro、Naruse Kiyoshi、Sakaue Hiroshi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 601 Pages: 65-72

    • DOI

      10.1016/j.bbrc.2022.02.082

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PD-1 agonism by anti-CD80 inhibits T cell activation and alleviates autoimmunity2022

    • Author(s)
      Sugiura Daisuke、Okazaki Il-mi、Maeda Takeo K.、Maruhashi Takumi、Shimizu Kenji、Arakaki Rieko、Takemoto Tatsuya、Ishimaru Naozumi、Okazaki Taku
    • Journal Title

      Nature Immunology

      Volume: 23 Issue: 3 Pages: 399-410

    • DOI

      10.1038/s41590-021-01125-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] JRAB/MICAL-L2 undergoes liquid-liquid phase separation to form tubular recycling endosomes2021

    • Author(s)
      Sakane Ayuko、Yano Taka-aki、Uchihashi Takayuki、Horikawa Kazuki、Hara Yusuke、Imoto Issei、Kurisu Shusaku、Yamada Hiroshi、Takei Kohji、Sasaki Takuya
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 551-551

    • DOI

      10.1038/s42003-021-02080-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] FRET-Based Detection and Quantification of HIV-1 Virion Maturation2021

    • Author(s)
      Sarca Anamaria D.、Sardo Luca、Fukuda Hirofumi、Matsui Hiroyuki、Shirakawa Kotaro、Horikawa Kazuki、Takaori-Kondo Akifumi、Izumi Taisuke
    • Journal Title

      Frontiers in Microbiology

      Volume: 12 Pages: 1-13

    • DOI

      10.3389/fmicb.2021.647452

    • NAID

      120007180366

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Design and synthesis of gene-directed caged cyclic nucleotides exhibiting cell type selectivity2021

    • Author(s)
      Suzuki Akinobu Z.、Sakano Taichi、Sasaki Hirona、Watahiki Rei、Sone Masaki、Horikawa Kazuki、Furuta Toshiaki
    • Journal Title

      Chemical Communications

      Volume: 57 Issue: 46 Pages: 5630-5633

    • DOI

      10.1039/d1cc01405f

    • NAID

      120007175419

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exploring rare cellular activity in more than one million cells by a transscale scope2021

    • Author(s)
      Ichimura T.、Kakizuka T.、Horikawa K.、Seiriki K.、Kasai A.、Hashimoto H.、Fujita K.、Watanabe T. M.、Nagai T.
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 16539-16539

    • DOI

      10.1038/s41598-021-95930-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Programmed death (PD)‐1/PD‐ligand 1 blockade mediates antiangiogenic effects by tumor‐derived CXCL10/11 as a potential predictive biomarker2021

    • Author(s)
      Mitsuhashi Atsushi、Kondoh Kensuke、Horikawa Kazuki、Koyama Kazuya、Nguyen Na Thi、Afroj Tania、Yoneda Hiroto、Otsuka Kenji、Ogino Hirokazu、Nokihara Hiroshi、Shinohara Tsutomu、Nishioka Yasuhiko
    • Journal Title

      Cancer Science

      Volume: 112 Issue: 12 Pages: 4853-4866

    • DOI

      10.1111/cas.15161

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PD-1 preferentially inhibits the activation of low-affinity T cells2021

    • Author(s)
      Shimizu Kenji、Sugiura Daisuke、Okazaki Il-mi、Maruhashi Takumi、Takemoto Tatsuya、Okazaki Taku
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 35

    • DOI

      10.1073/pnas.2107141118

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The nephric mesenchyme lineage of intermediate mesoderm is derived from Tbx6-expressing derivatives of neuro-mesodermal progenitors via BMP-dependent Osr1 function2021

    • Author(s)
      Hayashi Shinichi、Suzuki Hitomi、Takemoto Tatsuya
    • Journal Title

      Developmental Biology

      Volume: 478 Pages: 155-162

    • DOI

      10.1016/j.ydbio.2021.07.006

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An information-theoretic approach to infer the underlying interaction domain among elements from finite length trajectories in a noisy environment2021

    • Author(s)
      Basak Udoy S.、Sattari Sulimon、Hossain Md. Motaleb、Horikawa Kazuki、Komatsuzaki Tamiki
    • Journal Title

      The Journal of Chemical Physics

      Volume: 154 Issue: 3 Pages: 034901-034901

    • DOI

      10.1063/5.0034467

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transfer entropy dependent on distance among agents in quantifying leader-follower relationships2021

    • Author(s)
      Basak Udoy S.、Sattari Sulimon、Hossain Motaleb、Horikawa Kazuki、Komatsuzaki Tamiki
    • Journal Title

      Biophysics and Physicobiology

      Volume: 18 Issue: 0 Pages: 131-144

    • DOI

      10.2142/biophysico.bppb-v18.015

    • NAID

      130008054076

    • ISSN
      2189-4779
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Inferring domain of interactions among particles from ensemble of trajectories2020

    • Author(s)
      Basak Udoy S.、Sattari Sulimon、Horikawa Kazuki、Komatsuzaki Tamiki
    • Journal Title

      Physical Review E

      Volume: 102 Issue: 1

    • DOI

      10.1103/physreve.102.012404

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sox2 gene regulation via the D1 enhancer in embryonic neural tube and neural crest by the combined action of SOX2 and ZIC22020

    • Author(s)
      Iida Hideaki、Furukawa Yoko、Teramoto Machiko、Suzuki Hitomi、Takemoto Tatsuya、Uchikawa Masanori、Kondoh Hisato
    • Journal Title

      Genes to Cells

      Volume: In press Issue: 4 Pages: 242-256

    • DOI

      10.1111/gtc.12753

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Point mutagenesis in mouse reveals contrasting pathogenetic effects between MEN2B‐ and Hirschsprung disease‐associated missense mutations of the RET gene2020

    • Author(s)
      Nakatani Taichi、Iwasaki Mitsuhiro、Yamamichi Atsuhiro、Yoshioka Yuta、Uesaka Toshihiro、Bitoh Yuko、Maeda Kosaku、Fukumoto Takumi、Takemoto Tatsuya、Enomoto Hideki
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62 Issue: 4 Pages: 214-222

    • DOI

      10.1111/dgd.12664

    • NAID

      120006863591

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sox2 gene regulation via the D1 enhancer in embryonic neural tube and neural crest by the combined action of SOX2 and ZIC22020

    • Author(s)
      Iida H, Furukawa Y, Teramoto M, Suzuki H, Takemoto T, Uchikawa M, Kondoh H.
    • Journal Title

      Genes to Cells

      Volume: 25(4) Pages: 242-256

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The absence of SOX2 in the anterior foregut alters the esophagus into trachea and bronchi in both epithelial and mesenchymal components2020

    • Author(s)
      Teramoto M, Sugawara R, Minegishi K, Uchikawa M, Takemoto T, Kuroiwa A, Ishii Y, Kondoh H.
    • Journal Title

      Biology Open

      Volume: 9 (2) Pages: 558-566

    • NAID

      120006859990

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Restriction of PD-1 function by cis-PD-L1/CD80 interactions is required for optimal T cell responses2019

    • Author(s)
      Sugiura D, Maruhashi T, Okazaki I, Shimizu K, Maeda T, Takemoto T, Okazaki T.
    • Journal Title

      Science

      Volume: 364 (6440) Pages: 558-566

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hoxa13 regulates expression of common Hox target genes involved in cartilage development to coordinate the expansion of the autopodal anlage2019

    • Author(s)
      Yamamoto S, Uchida Y, Ohtani T, Nozaki E, Yin C, Gotoh Y, Yakushiji‐Kaminatsui N, Higashiyama T, Suzuki T, Takemoto T, Shiraishi Y, Kuroiwa A.
    • Journal Title

      Development, growth & differentiation

      Volume: 61 (3) Pages: 228-251

    • NAID

      120006941124

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of PDX-1 mutant porcine blastocysts by introducing CRISPR/Cas9-system into porcine zygotes via electroporation2019

    • Author(s)
      Tanihara F, Hirata M, Nguyen NT, Le QA, Hirano T, Takemoto T, Nakai M, Fuchimoto DI, Otoi T
    • Journal Title

      Anim Sci J

      Volume: 90(1) Pages: 55-61

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cardiomyocytes cultured on mechanically compliant substrates, but not on conventional culture devices, exhibit prominent mitochondrial dysfunction due to reactive oxygen species and insulin resistance under high glucose2018

    • Author(s)
      Morishima M, Horikawa K, Funaki M
    • Journal Title

      PLOS/ONE

      Volume: 13(8)

    • NAID

      120006871191

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of a TP53-modified porcine cancer model by CRISPR/Cas9-mediated gene modification in porcine zygotes via electroporation2018

    • Author(s)
      Tanihara F, Hirata M, Nguyen NT, Le QA, Hirano T, Takemoto T, Nakai M, Fuchimoto DI, Otoi T
    • Journal Title

      PLoS One

      Volume: 13(10)

    • NAID

      120006548638

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration2018

    • Author(s)
      Harada A, Maehara K, Ono Y, Taguchi H, Yoshioka K, Kitajima Y, Xie Y, Sato Y, Iwasaki T, “Nogami J, Okada S, Komatsu T, Semba Y, Takemoto T, Kimura H, Kurumizaka H, Ohkawa Y
    • Journal Title

      Nat Commun

      Volume: 9(1) Pages: 1400-1400

    • NAID

      120006949474

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Effects of voltage strength during electroporation on the development and quality of in vitro-produced porcine embryos2018

    • Author(s)
      Nishio K, Tanihara F, Nguyen TV, Kunihara T, Nii M, Hirata M, Takemoto T, Otoi T
    • Journal Title

      Reprod Domest Anim

      Volume: 53(2) Pages: 313-318

    • NAID

      120007099364

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 10万細胞の集団に生じる細胞間信号波の形成機構2022

    • Author(s)
      堀川一樹
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 多細胞システムのパターン形成を駆使するシンギュラリティ細胞の同定と操作2022

    • Author(s)
      堀川一樹
    • Organizer
      新学術領域「シンギュラリティ生物学」成果報告シンポジウム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 円順列変異体化による 1 蛍光型プローブの機能改良2022

    • Author(s)
      堀川一樹
    • Organizer
      物質・デバイス領域キックオフシンポジウム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 興奮性多細胞システムのトランススケールイメージングで明らかになったらせん状信号波の形成機構2021

    • Author(s)
      堀川一樹
    • Organizer
      第60回日本生体医工学会・第36回日本生体磁気学会 合同大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Onset of the signaling wave at 10,000 cell population2021

    • Author(s)
      Kazuki Horikawa
    • Organizer
      PacifiChem2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 大規模イメージングで明らかになった、cAMP信号波の螺旋コア形成機構2019

    • Author(s)
      堀川一樹
    • Organizer
      第42回日本分子生物学会
    • Related Report
      2019 Annual Research Report
  • [Presentation] “Singularity Biology : small elements change the function of the systems”2019

    • Author(s)
      Kazuki Horikawa
    • Organizer
      ICSB2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Red fluorescent cAMP indicator with increased affinity and expanded dynamic range2018

    • Author(s)
      Kazuki Horikawa
    • Organizer
      The 18th Annual Meeting of the Protein Science Society of Japan
    • Related Report
      2018 Annual Research Report
  • [Book] "Zygote Electroporation for CRISPR/Cas9 Delivery to Generate Genetically Modified Mice" in Electroporation Protocols (Methods in Molecular Biology)2020

    • Author(s)
      Tatsuya Takemoto
    • Total Pages
      6
    • Publisher
      Humana Press
    • ISBN
      9781493997398
    • Related Report
      2019 Annual Research Report
  • [Book] How Low Can You Go? The Numbers of Cells That Make Up Bodies: Large Numbers and Small Numbers, Minorities and Small Numbers from Molecules to Organisms in Biology-Toward a New Understanding of Biological Phenomena2018

    • Author(s)
      Kazuki Horikawa
    • Total Pages
      7
    • Publisher
      Springer
    • ISBN
      9789811320835
    • Related Report
      2018 Annual Research Report
  • [Book] 蛍光タンパク質ⅳ.cAMPプローブ, 生きてるものは全部観る! イメージングの選び方・使い方100+実験医学増刊 36 No.202018

    • Author(s)
      堀川一樹
    • Total Pages
      2
    • Publisher
      羊土社
    • ISBN
      9784758103756
    • Related Report
      2018 Annual Research Report

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Published: 2018-07-20   Modified: 2024-01-30  

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