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Structural analysis of CBL protein complexes as a signal suppressor

Planned Research

Project AreaStructural basis of cell-signalling complexes mediating signal perception, transduction and responses
Project/Area Number 22121008
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionHokkaido University

Principal Investigator

INAGAKI Fuyuhiko  北海道大学, 先端生命科学研究科(研究院), 特任教授 (70011757)

Project Period (FY) 2010-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥82,290,000 (Direct Cost: ¥63,300,000、Indirect Cost: ¥18,990,000)
Fiscal Year 2014: ¥19,370,000 (Direct Cost: ¥14,900,000、Indirect Cost: ¥4,470,000)
Fiscal Year 2013: ¥20,280,000 (Direct Cost: ¥15,600,000、Indirect Cost: ¥4,680,000)
Fiscal Year 2012: ¥21,320,000 (Direct Cost: ¥16,400,000、Indirect Cost: ¥4,920,000)
Fiscal Year 2011: ¥10,530,000 (Direct Cost: ¥8,100,000、Indirect Cost: ¥2,430,000)
Fiscal Year 2010: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
Keywordsチロシンキナーゼ / 過度的複合体 / 同位体ラベル / NMR / ナノディスク / 過渡的複合体 / ドッキング計算 / 架橋実験 / Cb1-b / E3リガーゼ / 自己免疫疾患 / ガン化 / SH2 / RING / チロシンリン酸化 / ユビキチン化 / PI / エフェクタータンパク質 / FYVEドメイン / PH / PX
Outline of Final Research Achievements

CBLis a RING-type E3 ubiquitin ligase that functions as a negative regulator of T-cell activation and growth factor receptor and nonreceptor-type tyrosine kinase signaling. NMR and small angle X-ray scattering analyses revealed that the unphosphorylated N-terminal region of CBL forms a compact structure by an intramolecular interaction, which masks interaction surface of the RING domain with an E2 ubiquitin-conjugating enzyme. Phosphorylation of Y371 disrupts the interdomain interaction to expose the E2 binding surface of the RING domain for efficient ubiquitination.
Ordered phosphorylation is required for receptor tyrosine kinase (RTK) activation; a process mediated by transient dimer formation of the kinase domains. This process is triggered by the tyrosine phosphorylation in the activation-loop. Here, we report structural and biochemical analyses of the tyrosine kinase domain interaction of FGFR required for the initial phosphorylation step.

Report

(6 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (58 results)

All 2014 2013 2012 2011 2010

All Journal Article (15 results) (of which Peer Reviewed: 14 results) Presentation (43 results) (of which Invited: 3 results)

  • [Journal Article] Structural basis of starvation-induced assembly of the autophagy initiation complex2014

    • Author(s)
      Yuko Fujioka, Sho W Suzuki, Hayashi Yamamoto, Chika Kondo-Kakuta, Yayoi Kimura, Hisashi Hirano, Rinji Akada, Fuyuhiko Inagaki, Yoshinori Ohsumi, Nobuo N Noda
    • Journal Title

      NATURE STRUCTURAL & MOLECUIAR BIOLOGY

      Volume: 21(発表確定) Issue: 6 Pages: 513-521

    • DOI

      10.1038/nsmb.2822

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1.2014

    • Author(s)
      Kumeta H, Sakakibara H, Enokizono Y, Ogura K, Horiuchi M, Matsumoto M, Seya T, Inagaki F.
    • Journal Title

      J Biomol NMR

      Volume: 58(3) Issue: 3 Pages: 227-30

    • DOI

      10.1007/s10858-014-9819-1

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structures and interface mapping of the TIR domain-containing adaptor molecules involved in interferon signaling.2013

    • Author(s)
      Enokizono Y, Kumeta H, Funami K, Horiuchi M, Sarmiento J, Yamashita K, Standley DM, Matsumoto M, Seya T, Inagaki F.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 110(49) Issue: 49 Pages: 19908-19913

    • DOI

      10.1073/pnas.1222811110

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-Throughput Evaluation Method for Drug Association with Pregnane X Receptor (PXR) Using Differential Scanning Fluorometry.2013

    • Author(s)
      Sekiguchi M., Kobashigawa Y., Moriguchi H., Kawasaki M., Yuda M, Teramura T., Inagaki F.
    • Journal Title

      J Biomol Screen

      Volume: 18(9) Issue: 9 Pages: 1084-91

    • DOI

      10.1177/1087057113491826

    • Related Report
      2013 Annual Research Report
  • [Journal Article] Practical applications of hydrostatic pressure to refold proteins from inclusion bodies for NMR structural studies.2013

    • Author(s)
      Ogura K., Kobashigawa Y., Saio T., Kumeta H., Torikai S., Inagaki F.
    • Journal Title

      Protein Eng Des Sel.

      Volume: 26(6) Issue: 6 Pages: 409-16

    • DOI

      10.1093/protein/gzt012

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conformational dynamics of yeast calmodulin in the Ca(2+)-bound state probed using NMR relaxation dispersion2012

    • Author(s)
      Kenji Ogura, Hideyasu Okamura, Masato Katahira, Etsuko Katoh, and Fuyuhiko Inagaki
    • Journal Title

      FEBS Letters

      Volume: 586 Issue: 16 Pages: 2548-2554

    • DOI

      10.1016/j.febslet.2012.06.031

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A low-cost affinity purification system using beta-1,3-glucan recognition protein and curdlan beads2012

    • Author(s)
      Horiuchi, M., Takahasi, K., Kobashigawa, Y., Ochiai, M. and Inagaki, F.
    • Journal Title

      PEDS

      Volume: 25 Issue: 8 Pages: 405-413

    • DOI

      10.1093/protein/gzs028

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural biology: CrkL is not Crk-like2012

    • Author(s)
      Kobashigawa Y
    • Journal Title

      Nat Chem Biol

      Volume: 8 Issue: 6 Pages: 504-505

    • DOI

      10.1038/nchembio.963

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin2012

    • Author(s)
      Ogura, K.
    • Journal Title

      Genes to Cells

      Volume: 17 Issue: 3 Pages: 159-172

    • DOI

      10.1111/j.1365-2443.2012.01580.x

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Convenient method for resolving degeneracies due to symmetry of the magnetic susceptibility tensor and its application to pseudo contact shift-based protein-protein complex structure determination2012

    • Author(s)
      Yoshihiro Kobashigawa, Tomohide Saio, Masahiro Ushio, Mitsuhiro Sekiguchi, Masashi Yokochi, Kenji Ogura, and Fuyuhiko Inagaki
    • Journal Title

      Journal of Biomolecular NMR

      Volume: 53 Issue: 1 Pages: 53-63

    • DOI

      10.1007/s10858-012-9623-8

    • NAID

      120005946609

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cb1-b2011

    • Author(s)
      Kobashigawa Y
    • Journal Title

      Proc Natl Acad Sci U S A

      Volume: 108(51) Pages: 20579-20584

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An NMR strategy for fragment-based ligand screening utilizing a paramagnetic lanthanide probe2011

    • Author(s)
      Saio T
    • Journal Title

      J Biomol NMR

      Volume: 51(3) Pages: 395-408

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An evaluation tool for FKBP12-dependent and -independent mTOR inhibitors using a combination of FKBP-mTOR fusion protein, DSC and NMR2011

    • Author(s)
      Sekiguchi M
    • Journal Title

      Protein Eng Des Sel

      Volume: 24(11) Pages: 811-817

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] PCS-based structure determination of protein-protein complexes.2010

    • Author(s)
      Saio T
    • Journal Title

      J Biomol NMR

      Volume: 46(4) Pages: 271-280

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphoinositide-incorporated lipid-protein Nanodiscs : A tool for studying protein-lipid interactions.2010

    • Author(s)
      Kobashigawa Y
    • Journal Title

      Anal Biochem

      Volume: 410(1) Pages: 77-83

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Paramagnetic lanthanide probe visualizes change of domain orientation induced by substrate and inhibitor binding and is a useful tool for drug screening.2014

    • Author(s)
      稲垣 冬彦
    • Organizer
      第5回日台NMRシンポジウム
    • Place of Presentation
      北海道大学百年記念会館(北海道札幌市)
    • Year and Date
      2014-09-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] Paramagnetic lanthanide probe visualizes change of domain orientation induced by substrate and inhibitor binding and is a useful tool for drug screening.2014

    • Author(s)
      稲垣 冬彦
    • Organizer
      ICMRBS 2014
    • Place of Presentation
      ハイアット リージェンシー (アメリカ合衆国)
    • Year and Date
      2014-08-24 – 2014-08-29
    • Related Report
      2014 Annual Research Report
  • [Presentation] 常磁性イオンを利用した長距離情報の取得/Acquirement of long distance information using paramagnetic ion.2014

    • Author(s)
      稲垣 冬彦
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜/横浜産貿ホール マリネリア(神奈川県横浜市)
    • Year and Date
      2014-06-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 金属イオンを利用した古くて新しい常磁性 NMR 解析2013

    • Author(s)
      稲垣 冬彦
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Ligand-driven conformational changes of MurD characterized by paramagnetic NMR.2013

    • Author(s)
      稲垣 冬彦
    • Organizer
      第52回 NMR 討論会
    • Place of Presentation
      石川県立音楽堂(石川県金沢市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] Ligand-driven conformational changes of MurD characterized by paramagnetic NMR2013

    • Author(s)
      稲垣 冬彦
    • Organizer
      APNMR5(5th Asia-Pacific NMR Symposium in conjunction with ANZMAG 2013)
    • Place of Presentation
      Brisbane Convention and Exhibition Centre, Australia
    • Related Report
      2013 Annual Research Report
  • [Presentation] NADPHオキシダーゼ細胞質因子p47phoxの柔軟な構造と機能2012

    • Author(s)
      小椋 賢治
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      マリンメッセ福岡・福岡国際会議場(福岡県)
    • Year and Date
      2012-12-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structure and dynamics of yeast calmodulin2012

    • Author(s)
      小椋 賢治
    • Organizer
      第51回NMR討論会
    • Place of Presentation
      ウインクあいち(愛知県)
    • Year and Date
      2012-11-08
    • Related Report
      2012 Annual Research Report
  • [Presentation] Structural Biology of Innate Immunity2012

    • Author(s)
      Fuyuhiko INAGAKI
    • Organizer
      Towards Comprehensive Understandingf of Immune Dynamism2012
    • Place of Presentation
      Osaka University(吹田市)
    • Year and Date
      2012-10-29
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] NMR-based drug discovery utilizing paramagnetic lanthanide probe2012

    • Author(s)
      Fuyuhiko INAGAKI
    • Organizer
      International Conference on Magnetic Resonance in Biological Systems2012
    • Place of Presentation
      Lyon Convention Centre (フランス)
    • Year and Date
      2012-08-19
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Structure and dinamics of yeast calmodulin2012

    • Author(s)
      K. Ogura
    • Organizer
      International Conference on Magnetic Resonance in Biological Systems2012
    • Place of Presentation
      Lyon Convention Centre (フランス)
    • Year and Date
      2012-08-19
    • Related Report
      2012 Annual Research Report
  • [Presentation] NMR analyses of the interaction between EEA1 FYVE domain and phosphoinositide embedded in lipid bilayer2012

    • Author(s)
      M.Yokogawa
    • Organizer
      International Conference on Magnetic Resonance in Biological Systems2012
    • Place of Presentation
      Lyon Convention Centre(フランス)
    • Year and Date
      2012-08-19
    • Related Report
      2012 Annual Research Report
  • [Presentation] 酵母カルモジュリンの構造とダイナミクス2012

    • Author(s)
      小椋 賢治
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2012-06-20
    • Related Report
      2012 Annual Research Report
  • [Presentation] シグナル抑制因子CBLの分子複合体構造と病因変異の解析2012

    • Author(s)
      稲垣冬彦
    • Organizer
      新学術領域研究「構造細胞生物学」 平成24年度全体会議・総括班会議
    • Place of Presentation
      湯本富士屋ホテル(神奈川県)
    • Year and Date
      2012-06-13
    • Related Report
      2012 Annual Research Report
  • [Presentation] 脂質結合タンパク質p47phoxの準安定構造とNADPHオキシダーゼの機能の関連2012

    • Author(s)
      小椋 賢治
    • Organizer
      新学術領域 過渡的複合体 班会議
    • Place of Presentation
      リゾナーレ(山梨県)
    • Year and Date
      2012-05-17
    • Related Report
      2012 Annual Research Report
  • [Presentation] Development and application of NMR tools useful for structural cell biology2011

    • Author(s)
      稲垣冬彦
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪)(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structure and dynamics of a proline-rich peptide2011

    • Author(s)
      小椋賢治
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR-based drug discovery utilizing paramagnetic lanthanide probe2011

    • Author(s)
      斉尾智英
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪)
    • Related Report
      2011 Annual Research Report
  • [Presentation] シグナル抑制因子CBLの分子複合体構造と病因変異の解析2011

    • Author(s)
      稲垣冬彦
    • Organizer
      第2回全体会議新学術領域研究「構造細胞生物学」
    • Place of Presentation
      ホテル日航奈良(奈良)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Phosphorylation induced conformation change and its biological implication2011

    • Author(s)
      稲垣冬彦
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(姫路)(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Characterizing conformational change in yeast calmodulin using NMR relaxation dispersion and SAXS2011

    • Author(s)
      小椋賢治
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      兵庫県立大学姫路書写キャンパス(姫路)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural and Functional Studies of Proteins by NMR2011

    • Author(s)
      稲垣冬彦
    • Organizer
      プロテイン・アイランド・松山国際シンポジウム2011
    • Place of Presentation
      松山全日空ホテル(松山)(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 高圧リフォールディングによるタンパク質立体構造解析試料の調製法2011

    • Author(s)
      小椋賢治
    • Organizer
      第52回高圧討論会
    • Place of Presentation
      沖縄キリスト教学院(沖縄)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Application of the paframagnetic lanthanide probe using a tag : structural analysis, ligand screening, and signal assignment2011

    • Author(s)
      Fuyuhiko Inagaki
    • Organizer
      ISNMR2011
    • Place of Presentation
      大さん橋ホール(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structure and dynamics of yeast calmodulin2011

    • Author(s)
      Kenji Ogura
    • Organizer
      ISNMR2011
    • Place of Presentation
      大さん橋ホール(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Novel interaction mode of Atg8 with the extreme C-terminal region of Atg72011

    • Author(s)
      Hiroyuki Kumeta
    • Organizer
      ISNMR2011
    • Place of Presentation
      大さん橋ホール(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Convenient method for modulating the direction of the magnetic susceptibility tensor relative to the target protein and its application for PCS-based protein-protein complex structure determination2011

    • Author(s)
      Yoshihiro Kobashigawa
    • Organizer
      ISNMR2011
    • Place of Presentation
      大さん橋ホール(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] NMR Analyses of the protein-membrane interaction by using phosphoinositide-incorporated lipid-protein nanodiscs2011

    • Author(s)
      Mariko Yokogawa
    • Organizer
      ISNMR2011
    • Place of Presentation
      大さん橋ホール(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Software tool for sequence-specific resonance assignment of proteins using the lanthanide probe method2011

    • Author(s)
      Masashi Yokochi
    • Organizer
      ISNMR2011
    • Place of Presentation
      大さん橋ホール(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Lanthanide probe method and its application to ligand screening2011

    • Author(s)
      Fuyuhiko Inagaki
    • Organizer
      平成23年度日本分光学会年次講演会
    • Place of Presentation
      理化学研究所横浜研究所交流棟(横浜)(招待講演)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Crystal structure of Oligosaccharyltransferase from Archaeoglobus fulgidus2011

    • Author(s)
      Shunsuke Matsumoto
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structure and dynamics of yeast calmodulin2011

    • Author(s)
      Kenji Ogura
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 酵母カルモジュリンの特異な標的認識機構2010

    • Author(s)
      小椋賢治
    • Organizer
      第10回蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌)
    • Related Report
      2010 Annual Research Report
  • [Presentation] DSCとNMRを用いたFKBP12とmTOR融合タンパク質の評価2010

    • Author(s)
      関口光広
    • Organizer
      第10回蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌)
    • Related Report
      2010 Annual Research Report
  • [Presentation] ランタノイドプローブを用いたタンパク質複合体の立体構造解析2010

    • Author(s)
      斉尾智英
    • Organizer
      第10回蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(札幌)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Phosphoinositide-incoporated lipid-protein nanodiscs : A versatile tool for studying protein-lipid interactions by using solution NMR, International Conference on Magnetic Resonance in Biological Systems.2010

    • Author(s)
      Yoshihiro Kobashigawa
    • Organizer
      International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Cairns Convention Centre (Cairns)(稲垣・招待講演)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 迅速かつ堅牢なNMRスペクトル解析支援技術の開発2010

    • Author(s)
      横地政志
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      タワーホール船堀(東京)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 常磁性ランタニドプローブ法を用いた薬剤探索2010

    • Author(s)
      齋尾智英
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      タワーホール船堀(東京)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Scanning Fluorometryを用いた迅速なLBT 2点固定コンストラクトのスクリーニング手法2010

    • Author(s)
      生塩理尋
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      タワーホール船堀(東京)
    • Related Report
      2010 Annual Research Report
  • [Presentation] イノシトールリン脂質組み込みNanodiscを用いたタンパク質-膜間相互作用解析2010

    • Author(s)
      吉田直樹
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      タワーホール船堀(東京)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR studies of molecular interaction using PCS and anodisc.2010

    • Author(s)
      Fuyuhiko Inagaki
    • Organizer
      2010 International Chemical Congress of Pacific Basin Societies
    • Place of Presentation
      Hawaii Convention Center (Honolulu)(招待講演)
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR Structure of the Heterodimer of Bem1 and Cdc24 PB1 Domains from Saccharomyces Cerevisiae2010

    • Author(s)
      Kenji Ogura
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド(神戸)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Phosphoinositide含有ナノディスクを用いたタンパク質-脂質相互作用解析2010

    • Author(s)
      小橋川敬博
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド(神戸)
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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