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Visualization and proteomics of chromatin remodeling in DNA damage response

Planned Research

Project AreaCoupling of replication, repair and transcription, and their common mechanism of chromatin remodeling
Project/Area Number 22131005
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionTohoku University

Principal Investigator

YASUI Akira  東北大学, 加齢医学研究所, 教授 (60191110)

Project Period (FY) 2010-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥132,600,000 (Direct Cost: ¥102,000,000、Indirect Cost: ¥30,600,000)
Fiscal Year 2014: ¥24,180,000 (Direct Cost: ¥18,600,000、Indirect Cost: ¥5,580,000)
Fiscal Year 2013: ¥25,480,000 (Direct Cost: ¥19,600,000、Indirect Cost: ¥5,880,000)
Fiscal Year 2012: ¥26,650,000 (Direct Cost: ¥20,500,000、Indirect Cost: ¥6,150,000)
Fiscal Year 2011: ¥26,390,000 (Direct Cost: ¥20,300,000、Indirect Cost: ¥6,090,000)
Fiscal Year 2010: ¥29,900,000 (Direct Cost: ¥23,000,000、Indirect Cost: ¥6,900,000)
Keywordschromatin remodeling / DNA repair / ARID1A / transcription / ENL / Polycomb / Ubiquitination / transcription and repair / クロマチンリモデリング / DNA修復 / 発癌 / 癌治療 / 二重鎖切断 / 転写 / DNA二重鎖切断 / 蛋白可視化 / 非相同末端結合 / 相同組換え
Outline of Final Research Achievements

We have identified chromatin remodeling factors of BAF complex required for accumulation of KU proteins at DNA double-strand breaks (DSB) and its repair by NHEJ. Among the factors are ARID1A recently determined as one of the most frequent mutation in various cancer cells and other factors, which are silenced very often in cancer cells. These cells are also sensitive to a common cancer therapy drug cisplatin. Therefore, many of cancer cells are at least partly DNA repair deficient, suggesting that effective cancer therapy can be predicted by the analysis of the chromatin remodeling factors. Another finding of this project was the mechanisms of transcriptional repression at DSB. In response to DSB ATM is activated and ENL, a factor in the transcriptional elongation complex, is phosphorylated by the ATM, that enables to recruit the Polycomb complex PRC1 to the site, which ubiquitinates histone H2A leading to the repression of transcription at the site and DSB repair proteins at the site.

Report

(6 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (21 results)

All 2015 2014 2013 2012 2011 2010

All Journal Article (16 results) (of which Peer Reviewed: 16 results,  Open Access: 2 results,  Acknowledgement Compliant: 3 results) Presentation (5 results) (of which Invited: 4 results)

  • [Journal Article] Transcriptional elongation factor ENL phosphorylated by ATM recruits Polycomb and switches off transcription for DSB repair2015

    • Author(s)
      Ui A, Nagaura Y, Yasui A
    • Journal Title

      Mol Cell

      Volume: 58

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] SWI/SNF factors required for cellular resistance to DNA damage include ARID1A and ARID1B and show interdependent protein stability2014

    • Author(s)
      Watanabe R, Ui A, Kanno S-I, Ogiwara H, Nagase T, Kohno T, and Yasui A.
    • Journal Title

      Cancer Res.

      Volume: 74 Issue: 9 Pages: 2465-2475

    • DOI

      10.1158/0008-5472.can-13-3608

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Possible involvement of LKB1-AMPK signaling in non-homologous end joining.2014

    • Author(s)
      Ui A, Ogiwara H, Nakajima S, Kanno S-I, Watanabe R, Harata M, Okayama H, Harris CC, Yokota J, Yasui A and Kohno T
    • Journal Title

      Oncogene

      Volume: 33 Issue: 13 Pages: 1640-1648

    • DOI

      10.1038/onc.2013.125

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] The BRCA1/BARD1-interacting protein OLA1 functions in centrosome regulation.2014

    • Author(s)
      Matsuzawa A, Kanno S, Nakayama M, Mochiduki H, Wei L, Shimaoka T, Furukawa Y, Kato K, Shibata S, Yasui A, Ishioka C, Chiba N.
    • Journal Title

      Mol Cell

      Volume: 53 Issue: 1 Pages: 101-114

    • DOI

      10.1016/j.molcel.2013.10.028

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] SWI/SNF factors required for cellular resistance to DNA damage include ARID1A and ARID1B and show interdependent protein stability2014

    • Author(s)
      Watanabe R. et al.
    • Journal Title

      Cancer Res.

      Volume: in press Pages: 111-122

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ubiquitin-specific protease 5 is required for the efficient repair of DNA double-strand breaks.2014

    • Author(s)
      Nakajima S. et al.
    • Journal Title

      PLoS One

      Volume: 9 Pages: 222-234

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Alternative excision repair pathways.2013

    • Author(s)
      Yasui A.
    • Journal Title

      Cold Spring Harb Perspect Biol.

      Volume: 5 Pages: 121-128

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polycomb group protein PHF1 regulates p53-dependent cell growth arrest and apoptosis2013

    • Author(s)
      Yang Y
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Pages: 529-539

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutations in UVSSA cause UV-sensitive syndrome and destabilize ERCC6 in transcription-coupled DNA repair.2012

    • Author(s)
      Zhang X
    • Journal Title

      Nat Genet

      Volume: 44 Pages: 593-597

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular basis for H3K36me3 recognition by the tudor domains of PHF1.2012

    • Author(s)
      Musselman CA
    • Journal Title

      Nat. Struct. Mol Biol.

      Volume: 19 Pages: 1266-1272

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] WRNIP1 accumulates at laser light irradiated sites rapidly via its ubiquitin-binding zinc finger domain and independently from its ATPase domain.2012

    • Author(s)
      Nomura, H., Yoshimura, A., Edo, T., Kanno, S.I., Tada, S., Seki, M., Yasui, A., and Enomoto, T.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 417 Issue: 4 Pages: 1145-1150

    • DOI

      10.1016/j.bbrc.2011.12.080

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] BRCA1 contributes to transcription-coupled repair of DNA damage through polyubiquitination and degradation of Cockane syndrome B protein2011

    • Author(s)
      Wei L., et al
    • Journal Title

      Cancer Sci

      Volume: 102 Pages: 1840-1847

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The hMsh2-hMsh6 complex acts in concert with monoubiquitunated PCNA and Poleta in response to oxidative DNA damage in human cells2011

    • Author(s)
      Zlatanou A., ert al
    • Journal Title

      Mol Cell

      Volume: 43(未掲載) Pages: 649-662

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polynucleotide kinase and aprataxin-like forkhead-associated protein (PALF) acts as both a single-stranded DNA endonuclease and a single-stranded DNA 3' exonuclease and can participate in DNA endo joining in a biochemical system2011

    • Author(s)
      Li S., et al
    • Journal Title

      J Biol Chem

      Volume: 286(未掲載) Pages: 36368-36377

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Histone acetylation by p300 at double-strand break sites facilitates SWI/SNF chromatin remodeling and the recruitment of non-homologous end joining factors.2011

    • Author(s)
      Ogiwara, et al.
    • Journal Title

      Oncogene

      Volume: (In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The ACF1 complex is required for DNA double-strand break repair in human cells.2010

    • Author(s)
      Lan, et al.
    • Journal Title

      Mol Cell

      Volume: 40 Pages: 976-987

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] SWI/SNF Chromatin-Remodeling Factors Required for both NHEJ and NER are Frequently Silenced in Cancer Cell2014

    • Author(s)
      Reiko Watanabe, Shinichiro Kanno and Akira Yasui
    • Organizer
      5th Japan-US/ US-Japan DNA Repair Meeting
    • Place of Presentation
      徳島
    • Year and Date
      2014-10-28 – 2014-10-31
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Repair and Chromatin Remodeling Factors Required for Cellular Resistance to Radiation Damage2014

    • Author(s)
      Akira Yasui and Reiko Watanabe
    • Organizer
      13th International Workshop on Radiation Damage to DNA
    • Place of Presentation
      MIT USA
    • Year and Date
      2014-06-14 – 2014-06-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Chromatin remodeling and DNA double-strand break repair2012

    • Author(s)
      安井 明
    • Organizer
      The 3rd Erling Seeberg Symposium
    • Place of Presentation
      トロンハイム/ノルウエイ
    • Year and Date
      2012-06-19
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] DNA single-strand breaks and activation of PARP2012

    • Author(s)
      安井 明
    • Organizer
      US-Japan DNA Repair Meeting
    • Place of Presentation
      ワシントン (DC) 米国
    • Year and Date
      2012-04-15
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] クロマチンリモデリングの可視化プロテオミクス2011

    • Author(s)
      Akira Yasui
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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