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Investigation on the dynamics of protein folding by single molecule fluorescence spectroscopy

Planned Research

Project AreaScience on Function of Soft Molecular Systems by Cooperation of Theory and Experiment
Project/Area Number 25104007
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionTohoku University

Principal Investigator

Takahashi Satoshi  東北大学, 多元物質科学研究所, 教授 (30283641)

Co-Investigator(Renkei-kenkyūsha) KAMAGATA Kiyoto  東北大学, 多元物質科学研究所, 助教 (90432492)
OIKAWA Hiroyuki  東北大学, 多元物質科学研究所, 助教 (40536778)
Research Collaborator MANO Eriko  東北大学, 多元物質科学研究所, 技術補佐員
Project Period (FY) 2013-06-28 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥56,680,000 (Direct Cost: ¥43,600,000、Indirect Cost: ¥13,080,000)
Fiscal Year 2017: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2016: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2015: ¥11,830,000 (Direct Cost: ¥9,100,000、Indirect Cost: ¥2,730,000)
Fiscal Year 2014: ¥11,830,000 (Direct Cost: ¥9,100,000、Indirect Cost: ¥2,730,000)
Fiscal Year 2013: ¥11,180,000 (Direct Cost: ¥8,600,000、Indirect Cost: ¥2,580,000)
Keywordsタンパク質ダイナミクス / フォールディング / 一分子蛍光分光法 / p53 / タンパク質フォールディング / 一分子蛍光観察 / 生物物理 / タンパク質科学 / ダイナミクス / 一分子蛍光分光 / 蛋白質 / 一分子計測(SMD) / タンパク質 / プロテインAのBドメイン / 一分子ソーター / タンパク質のフォールディング / ファージ・ディスプレイ法 / 一分子選別装置
Outline of Final Research Achievements

We developed a new method of single molecule fluorescence detection that can track single-molecule fluorescence and FRET efficiency at the time resolution of 10 microsecond. We used the method for the investigation of the folding dynamics of proteins, and revealed the unexpected heterogeneity in the unfolded state of BdpA and ubiquitin. In addition, we constructed a fluorescence microscope that can image the sliding of a tumor suppressor p53 along the stretched DNA, and revealed its target search dynamics. We clarified various properties of p53 including the dependency of the target search on the divalent cations, the behavior of p53 near the target sequence and the roles of disordered linker in p53. The current results might open a new research field of investigating proteins based on the assimilation of data obtained by single molecule method and MD calculation. In addition, investigations of the dynamics of proteins in the environment mimicking nucleus might become possible.

Report

(6 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (78 results)

All 2018 2017 2016 2015 2014 2013 2010 Other

All Int'l Joint Research (1 results) Journal Article (22 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 22 results,  Open Access: 5 results,  Acknowledgement Compliant: 7 results) Presentation (54 results) (of which Int'l Joint Research: 10 results,  Invited: 16 results) Book (1 results)

  • [Int'l Joint Research] Academia Sinica(台湾)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Microsecond resolved single-molecule FRET time series measurements based on the line confocal optical system combined with hybrid photodetectors2018

    • Author(s)
      Hiroyuki Oikawa、Takumi Takahashi、Supawich Kamonprasertsukac、Satoshi Takahashi
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 20 Issue: 5 Pages: 3277-3285

    • DOI

      10.1039/c7cp06268k

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hypothesis: structural heterogeneity of the unfolded proteins originating from the coupling of the local clusters and the long-range distance distribution2018

    • Author(s)
      Takahashi Satoshi、Yoshida Aya、Oikawa Hiroyuki
    • Journal Title

      Biophysical Reviews

      Volume: 印刷中 Issue: 2 Pages: 363-373

    • DOI

      10.1007/s12551-018-0405-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] One-Dimensional Search Dynamics of Tumor Suppressor p53 Regulated by a Disordered C-Terminal Domain2017

    • Author(s)
      Murata Agato、Itoh Yuji、Mano Eriko、Kanbayashi Saori、Igarashi Chihiro、Takahashi Hiroto、Takahashi Satoshi、Kamagata Kiyoto
    • Journal Title

      Biophysical Journal

      Volume: 112 Issue: 11 Pages: 2301-2314

    • DOI

      10.1016/j.bpj.2017.04.038

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Disordered Linker in p53 Participates in Nonspecific Binding to and One-Dimensional Sliding along DNA Revealed by Single-Molecule Fluorescence Measurements2017

    • Author(s)
      Subekti Dwiky Rendra Graha、Murata Agato、Itoh Yuji、Fukuchi Satoshi、Takahashi Hiroto、Kanbayashi Saori、Takahashi Satoshi、Kamagata Kiyoto
    • Journal Title

      Biochmistry

      Volume: 56 Issue: 32 Pages: 4134-4144

    • DOI

      10.1021/acs.biochem.7b00292

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Heterogeneous Nature of the Native and Unfolded States of the B Domain of Protein A Revealed by Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy2017

    • Author(s)
      Otosu Takuhiro、Ishii Kunihiko、Oikawa Hiroyuki、Arai Munehito、Takahashi Satoshi、Tahara Tahei
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 121 Issue: 22 Pages: 5463-5473

    • DOI

      10.1021/acs.jpcb.7b00546

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probing native metal ion association sites through quenching of fluorophores in the nucleotide-binding domains of the ABC transporter MsbA2017

    • Author(s)
      Daiki Tatsumi, Kei Nanatani, Yuto Koike, Kiyoto Kamagata, Satoshi Takahashi, Ayumu Konno, Tadaomi Furuta, Minoru Sakurai, Nobuyuki Uozumi
    • Journal Title

      Biochem. J.

      Volume: 474 Issue: 12 Pages: 1993-2007

    • DOI

      10.1042/bcj20161051

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Non-native alpha-helices in the initial folding intermediate facilitate the ordered assembly of the beta-barrel in beta-lactoglobulin2017

    • Author(s)
      Sakurai, K., Yagi, M., Konuma, T., Takahashi, S., Nishimura, C., Goto, Y.
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 36 Pages: 4799-4807

    • DOI

      10.1021/acs.biochem.7b00458

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Finding the target: Characterization of the facilitated diffusion of transcriptional factor p53 along DNA using ensemble kinetic and single-molecule fluorescence measurements2017

    • Author(s)
      Kamagata K., Murata A., Itoh Y., Takahashi S.
    • Journal Title

      J. Photochem. Photobiol., C: Photochem. Reviews

      Volume: 30 Pages: 36-50

    • DOI

      10.1016/j.jphotochemrev.2017.01.004

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Raman optical activity of tetra-alanine in the poly(L-proline) II type peptide conformation2017

    • Author(s)
      Masakazu Furuta, Tomotsumi Fujisawa, Hiroyasu Urago, Takahiro Eguchi, Takahito Shingae, Satoshi Takahashi, Ewan W. Blanch, Masashi Unno
    • Journal Title

      Phys. Chem. Chem. Phys.

      Volume: 19 Issue: 3 Pages: 2078-2086

    • DOI

      10.1039/c6cp07828a

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] DNA garden: A simple method for producing arrays of stretchable DNA for single-molecule fluorescence imaging of DNA binding proteins2017

    • Author(s)
      Igarashi C., Murata A., Itoh Y., Subekti D. R. G., Takahashi S., Kamagata K.
    • Journal Title

      Bull. Chem. Soc. Jpn.

      Volume: 90 Issue: 1 Pages: 34-43

    • DOI

      10.1246/bcsj.20160298

    • NAID

      130005289868

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Significant Heterogeneity and Slow Dynamics of the Unfolded Ubiquitin Detected by the Line Confocal Method of Single-Molecule Fluorescence Spectroscopy2016

    • Author(s)
      Masataka Saito, Supawich Kamonprasertsuk, Satomi Suzuki, Kei Nanatani, Hiroyuki Oikawa, Keiichiro Kushiro, Madoka Takai, Po-ting Chen, Eric H.-L. Chen, Rita P.-Y. Chen, Satoshi Takahashi
    • Journal Title

      J. Phys. Chem. B

      Volume: 120 Issue: 34 Pages: 8818-8829

    • DOI

      10.1021/acs.jpcb.6b05481

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Activation of p53 facilitates the target search in DNA by enhancing the target recognition probability2016

    • Author(s)
      Itoh Y., Murata A., Sakamoto S., Nanatani K., Wada T., Takahashi S., Kamagata K.
    • Journal Title

      J. Mol. Biol.

      Volume: 428 Issue: 14 Pages: 2916-2930

    • DOI

      10.1016/j.jmb.2016.06.001

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Unique coupling of mono- and dioxygenase chemistries in a single active site promotes heme degradation2016

    • Author(s)
      Toshitaka Matsui, Shusuke Nambu, Celia W. Goulding, Satoshi Takahashi, Hiroshi Fujii, Masao Ikeda-Saito
    • Journal Title

      Proc. Natl. Acad. Sci. U.S.A.

      Volume: 113 Issue: 14 Pages: 3779-3784

    • DOI

      10.1073/pnas.1523333113

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Highly Collapsed Conformation of the Initial Folding Intermediates of β-Lactoglobulin with Non-Native α-Helix2015

    • Author(s)
      Tsuyoshi Konuma, Kazumasa Sakurai, Masanori Yagi, Yuji Goto, Teturo Fujisawa, Satoshi Takahashi
    • Journal Title

      Journal of Molecular Biology

      Volume: 427 Issue: 19 Pages: 3158-3165

    • DOI

      10.1016/j.jmb.2015.07.018

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] One-dimensional sliding of p53 along DNA is accelerated in the presence of Ca(2+) or Mg(2+) at millimolar concentrations2015

    • Author(s)
      Murata A, Ito Y, Kashima R, Kanbayashi S, Nanatani K, Igarashi C, Okumura M, Inaba K, Tokino T, Takahashi S, Kamagata K
    • Journal Title

      JOURNAL OF MOLECULAR BIOLOGY

      Volume: 427 Issue: 16 Pages: 2663-2678

    • DOI

      10.1016/j.jmb.2015.06.016

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complexity of the folding transition of the B domain of protein A revealed by the high-speed tracking of single-molecule fluorescence time series2015

    • Author(s)
      Hiroyuki Oikawa, Kiyoto Kamagata, Munehito Arai, Satoshi Takahashi
    • Journal Title

      J. Phys. Chem. B

      Volume: 119 Issue: 20 Pages: 6081-6091

    • DOI

      10.1021/acs.jpcb.5b00414

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Where the complex things are: single molecule andensemble spectroscopic investigations of protein folding dynamics2015

    • Author(s)
      Satoshi Tkahahshi, Kiyoto Kamagata, Hiroyuki Oikawa
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 36 Pages: 1-9

    • DOI

      10.1016/j.sbi.2015.11.006

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Microsecond Dynamics of a Protein by Single-Molecule Fluorescence Measurements2014

    • Author(s)
      小井川浩之、齊藤雅嵩、高橋聡
    • Journal Title

      Seibutsu Butsuri

      Volume: 54 Issue: 5 Pages: 276-279

    • DOI

      10.2142/biophys.54.276

    • NAID

      130004693958

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tip-Enhanced Raman Spectroscopy of 4,4'-Bipyridine and 4,4'-Bipyridine N, N'-Dioxide Adsorbedon Gold Thin Films2013

    • Author(s)
      Izabela I. Rzeznicka, Hideyuki Horino, Nobuaki Kikkawa, Suguru Sakaguchi, Akihiro Morita, Satoshi Takahashi, Tadahiro Komeda, Hiroshi Fukumura, Taro Yamada, and Maki Kawai
    • Journal Title

      Surf. Sci.

      Volume: 617 Pages: 1-9

    • DOI

      10.1016/j.susc.2013.08.010

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Serum Amyloid A3 Binds MD-2 To Activate p38 and NF-kB Pathways in a MyD88-Dependent Manner2013

    • Author(s)
      Atsuko Deguchi, Takeshi Tomita,Tsutomu Omori, Akiko Komatsu, Umeharu Ohto, Satoshi Takahashi, Natsuko Tanimura, Sachiko Akashi-Takamura, Kensuke Miyake and Yoshiro Maru
    • Journal Title

      he Journal of Immunology

      Volume: 15 Pages: 1856-1854

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Microsecond dynamics of an unfolded protein by a line confocal tracking of single molecule fluorescence2013

    • Author(s)
      Oikawa, H., Suzuki, Y., Saito, M., Kamagata, K., Arai, M., & Takahashi, S.
    • Journal Title

      Scientific Reports

      Volume: 3 Issue: 1 Pages: 2151-2151

    • DOI

      10.1038/srep02151

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of human REV7 in complex with a human REV3 fragment and structural implication of the interaction between DNA polymerase zeta and REV12010

    • Author(s)
      Hara K, Hashimoto H, Murakumo Y, Kobayashi S, Kogame T, Unzai S, Akashi S, Takeda S, Shimizu T, Sato M
    • Journal Title

      J Biol Chem

      Volume: 285 Issue: 40 Pages: 12299-12307

    • DOI

      10.1074/jbc.

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 実験と計算によるp53の標的DNA配列探索機能2017

    • Author(s)
      北尾彰朗・ 鎌形清人・高橋聡
    • Organizer
      日本化学会第97春季年会
    • Place of Presentation
      神奈川県横浜市(慶應義塾大学)
    • Year and Date
      2017-03-16
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Single-molecule characterization of p53 on DNA using DNA array "DNA garden"2017

    • Author(s)
      Kiyoto Kamagata, Agato Murata, Yuji Itoh
    • Organizer
      The 17th international p53 workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Ultrafast intersegmental transfer of a tumor suppressor p53 characterized by ensemble and single-molecule fluorescence spectroscopy2017

    • Author(s)
      Yuji Itoh, Agato Murata, Satoshi Takahashi, Kiyoto Kamagata
    • Organizer
      The 17th international p53 workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] p53-DNA interaction: Effect of linker modulation on binding and sliding2017

    • Author(s)
      Dwiky Rendra Graha Subekti, Agato Murata, Yuji Itoh, Satoshi Takahashi, Kiyoto Kamagata
    • Organizer
      The 17th international p53 workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Dynamics of protein folding studied by single molecule fluorescence measurements at microsecond resolution2017

    • Author(s)
      Satoshi Takahashi, Masataka Saito, Hiroyuki Oikawa
    • Organizer
      Dijon workshop: Deciphering complex energy landscape and kinetic network from single molecules to cells: A new challenge to make theories meet experiments
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics of protein folding studied by single molecule fluorescence measurements at microsecond resolution2016

    • Author(s)
      Satoshi Takahashi, Masataka Saito and Hiroyuki Oikawa
    • Organizer
      Indo-Japan Meeting, Frontiers in Molecular Spectroscopy:From Fundamentals to Applications on Material Science and Biology
    • Place of Presentation
      インド・カーンプル
    • Year and Date
      2016-11-13
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics of protein folding studied by single molecule fluorescence measurements at microsecond resolution2016

    • Author(s)
      Satoshi Takahashi, Masataka Saito and Hiroyuki Oikawa
    • Organizer
      The Third International Symposium on Protein Folding and Dynamis
    • Place of Presentation
      インド・バンガロール
    • Year and Date
      2016-11-08
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ライン共焦点顕微鏡によるタンパク質の構造形成運動の一分子蛍光観察2016

    • Author(s)
      高橋聡、齊藤雅嵩、鎌形清人、小井川浩之
    • Organizer
      第10回分子科学討論会
    • Place of Presentation
      兵庫県神戸市(神戸ファッションマート)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Direct observation of target DNA recognition of p53 mutants by single-molecule fluorescence microscopy2016

    • Author(s)
      Itoh, Yuji, Agato Murata, Seiji Sakamoto, Kei Nanatani, Chihiro Igarashi, Takehiko Wada, Satoshi Takahashi, Kiyoto Kamagata
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市・同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Effect of Linker Elongation in the DNA-binding of Tumor Suppressor p532016

    • Author(s)
      Dwiky Rendra Graha Subekti, Agato Murata ,Yuji Itoh ,Chihiro Igarashi Satoshi Takahashi, Kiyoto Kamagata
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市・同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 1分子FRET測定によるシャペロニンGroELのおりたたみ補助機構の解明2016

    • Author(s)
      松田智紗・吉田文・元島史尋・小井川浩之・鎌形清人・吉田賢右・高橋聡
    • Organizer
      日本化学会第96春季年会
    • Place of Presentation
      京都府京田辺市・同志社大学
    • Year and Date
      2016-03-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Dynamics of protein folding studied by single molecule fluorescence measurements at microsecond resolution2016

    • Author(s)
      Satoshi Takahashi, Masataka Saito, Kiyoto Kamagata and Hiroyuki OIkawa
    • Organizer
      Recent Advances in Molecular Spectroscopy: Fundamentals and Applications in Materials and Biolgy 2016
    • Place of Presentation
      インド・ハイデラバード
    • Year and Date
      2016-03-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Rapid sample flow strategy for the ultrafast tracking of single molecule fluorescence time series2015

    • Author(s)
      Satsohi Takahashi and Hiroyuki Oikawa
    • Organizer
      PACIFICHEM 2015
    • Place of Presentation
      米国・ハワイ
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Complex folding transition of the B domain of protein A investigated by the high-speed measurement of single-molecule FRET time series2015

    • Author(s)
      Hiroyuki Oikawa, Kiyoto Kamagata, Munehito Arai and Satsohi Takahashi
    • Organizer
      PACIFICHEM 2015
    • Place of Presentation
      米国・ハワイ
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamiccs of protein folding studied by single molecule fluorescence time series measurements at microsecond resolution2015

    • Author(s)
      Satsohi Takahashi, Masataka Saito, Kiyoto Kamagata and Hiroyuki Oikawa
    • Organizer
      39th Annual ASB Conference
    • Place of Presentation
      オーストラリア・アーミデール
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ユビキチンの折り畳みダイナミクスの一分子蛍光分光測定2015

    • Author(s)
      齊藤雅嵩, Chen Eric H.-L., Chen Po-Ting, Chen Rita P.-Y., 鎌形清人, 小井川浩之, 高橋聡
    • Organizer
      第9回分子科学討論会
    • Place of Presentation
      東京都大田区・東京工業大学
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] マイクロ秒分解一分子FRET測定よるタンパク質折り畳みダイナミクスの追跡2015

    • Author(s)
      小井川浩之, 新井宗仁, 深澤宏仁, 横田浩章, 井出徹, 高橋聡
    • Organizer
      第9回分子科学討論会
    • Place of Presentation
      東京都大田区・東京工業大学
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
  • [Presentation] 一分子蛍光観測法によるがん抑制蛋白質p53のスライディング運動の解明2015

    • Author(s)
      村田崇人、伊藤優志、五十嵐千裕、Dwiky Subekti Rendra Graha、高橋聡、鎌形清人
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市・金沢大学
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 一分子蛍光分光法によって観測されたユビキチンの変性状態の不均一性2015

    • Author(s)
      齊藤雅嵩、Chen Eric H.-L., Chen Po-Ting, Chen Rita P.-Y., 鎌形清人, 小井川浩之, 高橋聡
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市・金沢大学
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] DNA結合蛋白質の単分子蛍光観察のためのDNA整列技術の開発2015

    • Author(s)
      五十嵐千裕、村田崇人、高橋聡、鎌形清人
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市・金沢大学
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Observation of the Search Dynamics of p53 Mutants for the Target DNA Sequence by Single-molecule Fluorescence Microscopy2015

    • Author(s)
      Yuji Itoh, Agato Murata, Seiji Sakamoto, Kei Nanatani, Takehiko Wada, Satoshi Takahashi, and Kiyoto Kamagata
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市・金沢大学
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] Tracking microsecond single-molecule FRET dynamics on the fast protein folding by the line-confocal microscopy2015

    • Author(s)
      Hiroyuki Oikawa, Munehito Arai, Atsuhito Fukasawa, Hiroaki Yokota , Toru Ide , Satoshi Takahashi
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      石川県金沢市・金沢大学
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 一分子蛍光観測法によるがん抑制蛋白質p53のスライディング運動の解明2015

    • Author(s)
      村田崇人・伊藤優志・五十嵐千裕・高橋聡・鎌形清人
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市・あわぎんホール
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 一分子蛍光顕微鏡によるp53変異体の標的配列探索ダイナミクスの観察2015

    • Author(s)
      伊藤優志・村田崇人・坂本清志・七谷圭・和田健彦・高橋聡・鎌形清人
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市・あわぎんホール
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Investigation of the Role of Intrinsically Disordered Region in p53 Using Single Molecule Fluorescence Microscopy2015

    • Author(s)
      Dwiky Rendra Graha Subekti, Agato Murata, Chihiro Igarashi, Yuji Ito, Satoshi Takahashi, and Kiyoto Kamagata
    • Organizer
      第16回日本蛋白質科学会年会
    • Place of Presentation
      徳島県徳島市・あわぎんホール
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 一分子蛍光分光法によるタンパク質のフォールディング研究2015

    • Author(s)
      高橋聡
    • Organizer
      機能物性融合科学研究会シリーズ2ソフトダイナミクス
    • Place of Presentation
      千葉県柏市・東京大学物性研究所
    • Year and Date
      2015-04-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Development of The Line Confocal System for The Single Molecule Tracking of Folding Dynamics of Proteins2015

    • Author(s)
      Hiroyuki Oikawa , Kiyoto Kamagata, Munehito Arai, Atuhito Fukasawa, Hiroaki Yokota, Toru Ide, Satoshi Takahashi
    • Organizer
      Biophysical Society 59th Annual Meeting
    • Place of Presentation
      Baltimore, USA
    • Year and Date
      2015-02-07 – 2015-02-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Dynamics of Protein Folding Studied by Single Molecule Fluorescence Time Series Measurements at Microsecond Resolution2014

    • Author(s)
      Satoshi Takahashi
    • Organizer
      Indo-Jpanan Joint Workshop on "Frontiers in Molecular Spectroscopy : Fundamentals and Applications to Material and Biology"
    • Place of Presentation
      Nara, Japan
    • Year and Date
      2014-11-25 – 2014-11-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Folding dynamics of ubiquitin after rapid mixing detected by single molecule fluorescence spectroscopy2014

    • Author(s)
      Masataka Saito, Chen Erick, Chen Po-Ting, Chen Rita P.-Y., Kiyoto Kamagata, Hiroyuki Oikawa, Satoshi Takahashi
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of the line confocal system for the single molecule tracking of fast folding dynamics of proteins2014

    • Author(s)
      Hiroyuki Oikawa Kiyoto Kamagata, Munehito Arai, Atsuhito Fukasawa, Hiroaki Yokota, Toru Ide, Satoshi Takahashi
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Conformation of the denatured BFP bound to GroEL by single molecule FRET measurements2014

    • Author(s)
      Aya Yoshida, Fumihiro Motojima, Hiroyuki OIkawa, Kiyoto Kamagata, Masasuke Yoshida and Satoshi Takahashi
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Observation of the Search Dynamics of p53 for the Targent DNA Sequence by Single-molecule Fluorescence Microscopy2014

    • Author(s)
      Yuji Itoh、Agato Murata, Seiji Sakamoto, Takehiko Wada, Satoshi Takahasi, and Kiyoto Kamagata
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of a new strategy of protein design: the single phage sorting based on fluorescence intensity2014

    • Author(s)
      Rie Kiriguchi, Toshihiko Kubota, Norihisa Takahashi, Seiji Sakamoto, Hiroyuki Oikawa, Kiyoto Kamagata , Takehiko Wada, Satoshi Takahashi
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Investigation of DNA search mechanism of tumor suppressor p532014

    • Author(s)
      Agato Murata, Yuji Itoh, Dwiky Subekti Rendra Graha, Chihiro Igarashi, Satoshi Takahashi and Kiyoto Kamagata
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      北海道札幌市
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] タンパク質フォールディングの分子科学2014

    • Author(s)
      高橋聡
    • Organizer
      第1回森野ディスカッション いつもそこには分子がある
    • Place of Presentation
      東京大学・小柴ホール
    • Year and Date
      2014-08-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Continuous tracking of protein folding at microsecond resolution by a line confocal detection of single molecule fluorescence2014

    • Author(s)
      Satoshi Takahashi
    • Organizer
      The 28th Annual Symposium of The Protein Society
    • Place of Presentation
      San Diego, USA
    • Year and Date
      2014-07-27 – 2014-07-30
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Development of the line confocal system for the single-molecule tracking of the protein folding transition2014

    • Author(s)
      Hiroyuki Oikawa
    • Organizer
      International Workshop "Over the Barriers of Transition Paths: Dynamical Processes in Proteins and Complex Molecular Systems"
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-06-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] GroELに結合した基質BFPの一分子FRET計測による構造解析2014

    • Author(s)
      吉田文・元島史尋・田口英樹・小井川浩之・鎌形清人・吉田賢右・高橋聡
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-06-25 – 2014-06-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 癌抑制蛋白質p53のDNA探索機構の研究2014

    • Author(s)
      村田崇人・伊藤優志・Dwiky Subekti Rendra Graha・鹿島理沙・時野隆志・高橋聡・鎌形清人
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-06-25 – 2014-06-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 一分子蛍光分光法によるユビキチンの折り畳みダイナミクス2014

    • Author(s)
      齊藤雅嵩・Chen Hsin-Liang・Chen Po-Ting・Chen Rita P.-Y.・鎌形清人・小井川浩之・高橋聡
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-06-25 – 2014-06-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] 改良したマイクロ秒分解一分子蛍光測定法による蛋白質の高速折り畳みダイナミクスの追跡2014

    • Author(s)
      小井川浩之・鎌形清人・ 新井宗仁・ 深澤宏仁・横田浩章・井出徹・高橋聡
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-06-25 – 2014-06-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] タンパク質単分子の構造変化を計測する暗視野顕微鏡の開発2014

    • Author(s)
      鎌形清人・間野絵梨子・七谷圭・阿蘇裕樹・井上裕一・小井川浩之・高橋聡
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      神奈川県横浜市
    • Year and Date
      2014-06-25 – 2014-06-28
    • Related Report
      2014 Annual Research Report
  • [Presentation] Microsecond-dynamics of the unfolded BdpA and ubiquitin by a line confocal detection of single molecule fluorescence2014

    • Author(s)
      Hiroyuki Oikawa , Masataka Saito, Po-Ting Chen, Hsin-Liang Chen, Rita P.-Y. Chen, Munehito Arai, Kiyoto Kamagata, Satoshi Takahashi
    • Organizer
      The 4th Asia Pacific Protein Association Conference
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2014-06-17 – 2014-06-20
    • Related Report
      2014 Annual Research Report
  • [Presentation] Target Search Process of A Tumor Suppressor p53 Revealed by Single-Molecule Fluorescence Microscopy2014

    • Author(s)
      Agato Murata, Yuji Ito, Risa Kashima, Takashi Tokino, Satoshi Takahashi and Kiyoto Kamagata
    • Organizer
      The 16th International p53 workshop
    • Place of Presentation
      Stockholm, Sweden
    • Year and Date
      2014-06-15 – 2014-06-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] がん抑制因子p53の物理学2013

    • Author(s)
      鎌形清人
    • Organizer
      第2回生命科学若手交流研究会
    • Place of Presentation
      宮城県仙台市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 単分子蛍光観察によるがん抑制因子p53の物理学2013

    • Author(s)
      鎌形清人
    • Organizer
      第9回先端レーザー分光の若手シンポジウム  Frontiers of Advanced Laser Spectroscopy レーザー分光による分子科学の新しい展開(,和光市,(2013.12.3)
    • Place of Presentation
      埼玉県和光市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 一分子蛍光計測によるがん抑制因子p53のDNA探索機構の解明2013

    • Author(s)
      村田崇人, 高橋聡, 鎌形清人
    • Organizer
      第86回日本生化学会大会
    • Place of Presentation
      神奈川県横浜市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Direct observation of the multiple sliding modes of a tumor suppressor p532013

    • Author(s)
      Agato Murata, Risa Kashima, Yuji Itoh, Takashi Tokino, Satoshi Takahashi, Kiyoto Kamagata
    • Organizer
      International Symposium for the 70th Anniversary of the Tohoku Branch of the Chemical Society of Japan
    • Place of Presentation
      宮城県仙台市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Microsecond dynamics of Ubiquitin folding detected by single molecule fluorescence spectroscopy2013

    • Author(s)
      Masataka Saito, Hsin-Liang Chen, Rita P.-Y. Chen, Kiyoto Kamagata, Hiroyuki Oikawa, Satoshi Takahashi
    • Organizer
      International Symposium for the 70th Anniversary of the Tohoku Branch of the Chemical Society of Japan
    • Place of Presentation
      宮城県仙台市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Microsecond-resolved Tracking of the Unfolded State of BdpA by a Line Confocal Detection of Single Molecule Fluorescence2013

    • Author(s)
      Hiroyuki Oikawa, Yuta Suzuki, Masataka Saito, Kiyoto Kamagata, Munehito Arai, Satoshi Takahashi
    • Organizer
      Technologies for Medical Diagnosis and Therapy Symposium
    • Place of Presentation
      China, Taipei
    • Related Report
      2013 Annual Research Report
  • [Presentation] Direct observation of the multiple sliding modes of a tumor suppressor p532013

    • Author(s)
      Agato Murata, Risa Kashima, Yuji Itoh, Takashi Tokino, Satoshi Takahashi, Kiyoto Kamagata
    • Organizer
      The 51th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Dynamics of ubiquitin folding detected by single molecule fluorescence spectroscopy2013

    • Author(s)
      Masataka Saito, Chen Hsin-Liang, Chen Rita, Kiyoto Kamagata, Hiroyuki Oikawa, Satoshi Takahashi
    • Organizer
      The 51th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Improvements of the line confocal system for the single molecule tracking of fast folding dynamics of the B domain of protein A2013

    • Author(s)
      Hiroyuki Oikawa, Kiyoto Kamagata, Munehito Arai, Satoshi Takahashi
    • Organizer
      The 51th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Investigation of p53’s Linker Region Role Using Single Molecule Fluorescence Microscopy2013

    • Author(s)
      Toshihiko Kubota, Hiroyuki Oikawa, Kiyoto Kamagata, Satoshi Takahashi
    • Organizer
      The 51th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Book] 「揺らぎ・ダイナミクスと生体機能~物理化学的視点から見た生体分子~」2013

    • Author(s)
      小井川浩之・鎌形清人・高橋聡
    • Total Pages
      14
    • Publisher
      化学同人
    • Related Report
      2013 Annual Research Report

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Published: 2013-07-10   Modified: 2022-02-16  

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