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Sequence and structure of ncRNA operation elements

Planned Research

Project AreaNeo-taxonomy of noncoding RNAs
Project/Area Number 26113002
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionHokkaido University

Principal Investigator

Hirose Tetsuro  北海道大学, 遺伝子病制御研究所, 教授 (30273220)

Co-Investigator(Kenkyū-buntansha) 富田 耕造  東京大学, 大学院新領域創成科学研究科, 教授 (00345274)
Project Period (FY) 2014-07-10 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥232,440,000 (Direct Cost: ¥178,800,000、Indirect Cost: ¥53,640,000)
Fiscal Year 2018: ¥44,200,000 (Direct Cost: ¥34,000,000、Indirect Cost: ¥10,200,000)
Fiscal Year 2017: ¥46,410,000 (Direct Cost: ¥35,700,000、Indirect Cost: ¥10,710,000)
Fiscal Year 2016: ¥45,110,000 (Direct Cost: ¥34,700,000、Indirect Cost: ¥10,410,000)
Fiscal Year 2015: ¥46,280,000 (Direct Cost: ¥35,600,000、Indirect Cost: ¥10,680,000)
Fiscal Year 2014: ¥50,440,000 (Direct Cost: ¥38,800,000、Indirect Cost: ¥11,640,000)
Keywordsnoncoding RNA / 核内構造 / 液相分離 / ゲノム機能 / RNP複合体 / ノンコーディング RNA / RNAドメイン / 液体相分離 / 核内構造体 / RNAプロセシング / 生体分子 / 核酸 / 発現制御 / 細胞 / ゲノム / ノンコーディングRNA / RNA結合タンパク質 / RNA-タンパク質相互作用 / タンパク質構造 / ゲノム編集 / 遺伝子
Outline of Final Research Achievements

This study investigated the operating elements and machinery of arcRNAs that build massive intracellular structures. NEAT1 was employed as a model arcRNA. The operating elements were identified by the analyses using genome editing technology and revealed that ncRNA is comprised of modular domain structure such as those in polypeptides. It also revealed that multiple prion-like proteins bind the operating elements and induce liquid-liquid phase separation that eventually form a massive structure. A new method for searching arcRNAs has been developed and showed that the human genome produces numerous arcRNAs, suggesting that arcRNA can be a distinct taxon of ncRNAs. Furthermore, the structural analysis of the ncRNA processing factors revealed the detail molecular process at the atomic level.

Academic Significance and Societal Importance of the Research Achievements

本研究は、ncRNA配列中の作動エレメントと作動装置の解析を、世界に先駆けて詳細に行ったものであり、ncRNAの機能構造の理解に大きく貢献した。また一方で、ncRNA作動エレメントの機能として、プリオン様タンパク質を介した液相分離の誘発という作動原理を明確に示すことができ、ncRNA研究と相分離研究の接点を見いだしたことにより分子細胞生物学分野に大きなインパクトを与えた。また新規arcRNA探索法の開発によって、上記arcRNA機能の一般性が示され、arcRNAをncRNAの独立タクソンとして提唱するに至った。

Report

(6 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (173 results)

All 2019 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (18 results) Journal Article (42 results) (of which Int'l Joint Research: 12 results,  Peer Reviewed: 39 results,  Open Access: 15 results,  Acknowledgement Compliant: 11 results) Presentation (107 results) (of which Int'l Joint Research: 39 results,  Invited: 42 results) Book (2 results) Remarks (4 results)

  • [Int'l Joint Research] University of Western Australia(オーストラリア)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] CNRS(フランス)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Francis Crick Institute(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Rochester University/Stanford University/Augusta University(米国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] VIB(ベルギー)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Western Australia(オーストラリア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] CNRS(フランス)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] KAUST(サウジアラビア)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Francis Crick Institute(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Helmholtz Zentrum(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] CNRS(フランス)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] 西オーストラリア大(オーストラリア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] KAUST(サウジアラビア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] CNRS(フランス)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] 西オーストラリア(オーストラリア)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] CNRS(フランス)

    • Related Report
      2014 Annual Research Report
  • [Int'l Joint Research] 西オーストラリア大学(オーストラリア)

    • Related Report
      2014 Annual Research Report
  • [Int'l Joint Research] VIB(ベルギー)

    • Related Report
      2014 Annual Research Report
  • [Journal Article] The expression of long noncoding RNA NEAT1 is reduced in schizophrenia and modulates oligodendrocytes transcription.2019

    • Author(s)
      Katsel P, Roussos P, Fam P, Khan S, Tan W, Hirose T, Nakagawa S, Pletnikov MV, Haroutunian V.
    • Journal Title

      NPJ Schizophr.

      Volume: 5 Issue: 1 Pages: 3-3

    • DOI

      10.1038/s41537-019-0071-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Long noncoding RNA NEAT1 modulates immune cell functions and is suppressed in early onset myocardial infarction patients.2019

    • Author(s)
      Gast M, Rauch B, Haghikia A, Nakagawa S, Haas J, Stroux A, Schmidt D, Schumann P, Weiss S, Jensen L, Kratzer A, Kraenkel N, Mller C, B;rnigen D, Hirose T, Blankenberg S, Escher F, Khl A, Kuss A, Meder B, Landmesser U, Zeller T, Poller W.
    • Journal Title

      Cardiovasc Res.

      Volume: in press Issue: 13 Pages: 1886-1906

    • DOI

      10.1093/cvr/cvz085

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Crystal structure of the enterohemorrhagic Escherichia coli AtaT-AtaR toxin-antitoxin complex.2019

    • Author(s)
      Yashiro Y, Yamashita S, Tomita K.
    • Journal Title

      Structure

      Volume: 27 Pages: 476-484

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation2018

    • Author(s)
      Yamazaki Tomohiro、Souquere Sylvie、Chujo Takeshi、Kobelke Simon、Chong Yee Seng、Fox Archa H.、Bond Charles S.、Nakagawa Shinichi、Pierron Gerard、Hirose Tetsuro
    • Journal Title

      Molecular Cell

      Volume: 70 Issue: 6 Pages: 1038-1053

    • DOI

      10.1016/j.molcel.2018.05.019

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Long noncoding RNA NEAT1 (nuclear paraspeckle assembly transcript 1) is critical for phenotypic switching of vascular smooth muscle cells.2018

    • Author(s)
      Ahmed ASI, Dong K, Liu J, Wen T, Yu L, Xu F, Kang X, Osman I, Hu G, Bunting KM, Crethers D, Gao H, Zhang W, Liu Y, Wen K, Agarwal G, Hirose T, Nakagawa S, Vazdarjanova A, Zhou J.
    • Journal Title

      Proceedings of the National Academy of Sciences of the United States of America

      Volume: 115 Issue: 37

    • DOI

      10.1073/pnas.1803725115

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CRISPRa-mediated NEAT1 lncRNA upregulation induces formation of intact paraspeckles.2018

    • Author(s)
      Yamazaki T, Fujikawa C, Kubota A, Takahashi A, Hirose T.
    • Journal Title

      Biochemical and biophysical research communications

      Volume: 504 Issue: 1 Pages: 218-224

    • DOI

      10.1016/j.bbrc.2018.08.158

    • NAID

      120006725828

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dissection of nuclear paraspeckles: towards understanding the emerging world of the RNP milieu.2018

    • Author(s)
      Nakagawa S, Yamazaki T, Hirose T.
    • Journal Title

      Open Biology

      Volume: 8 Issue: 10 Pages: 180150-180150

    • DOI

      10.1098/rsob.180150

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Function and Regulation of Human Terminal Uridylyltransferases.2018

    • Author(s)
      Yashiro Y, Tomita K.
    • Journal Title

      Front. Genet.

      Volume: - Pages: 538-551

    • DOI

      10.3389/fgene.2018.00538

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis2018

    • Author(s)
      Taniguchi T, Miyauchi K, Sakaguchi Y, Yamashita S, Soma A, Tomita K, Suzuki T
    • Journal Title

      Nature Chemical Biology

      Volume: 14 Issue: 11 Pages: 1010-1020

    • DOI

      10.1038/s41589-018-0119-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human BCDIN3D is a cytoplasmic tRNAHis -specific 5'-monophosphate methyltransferase.2018

    • Author(s)
      Tomita K & Liu Y.
    • Journal Title

      Front. Genet

      Volume: - Pages: 305-310

    • DOI

      10.3389/fgene.2018.00305

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ノンコーディングRNAによる相転移を介した核内構造構築機構2018

    • Author(s)
      廣瀬哲郎
    • Journal Title

      科研費NEWS

      Volume: 2 Pages: 15-15

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] 長鎖非コードRNAであるNEAT1の機能ドメインは相分離を介して核内構造体であるパラスペックルの形成をひき起こす2018

    • Author(s)
      山崎智弘、廣瀬哲郎
    • Journal Title

      First Author's

      Volume: - Pages: 070

    • DOI

      10.7875/first.author.2018.070

    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] 超解像顕微鏡で長鎖ncRNAの機能解析2018

    • Author(s)
      廣瀬哲郎、中川真一
    • Journal Title

      日経バイオテク

      Volume: - Pages: 50-53

    • Related Report
      2018 Annual Research Report
  • [Journal Article] Paraspeckles: Where Long Noncoding RNA Meets Phase Separation.2017

    • Author(s)
      Fox AH, Nakagawa S, Hirose T, Bond CS.
    • Journal Title

      Trends Biochem Sci.

      Volume: 43(2) Issue: 2 Pages: 124-135

    • DOI

      10.1016/j.tibs.2017.12.001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Nuclear bodies built on architectural long noncoding RNAs: unifying principles of their construction and function2017

    • Author(s)
      Chujo T, Hirose T.
    • Journal Title

      Mol Cells.

      Volume: 31;40(12) Pages: 889-896

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neat1 is a p53-inducible lincRNA essential for transformation suppression.2017

    • Author(s)
      Mello SS, Sinow C, Raj N, Mazur PK, Bieging-Rolett K, Broz DK, Imam JFC, Vogel H, Wood LD, Sage J, Hirose T, Nakagawa S, Rinn J, Attardi LD.
    • Journal Title

      Genes Dev.

      Volume: 31(11) Issue: 11 Pages: 1095-1108

    • DOI

      10.1101/gad.284661.116

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Unusual semi‐extractability as a hallmark of nuclear body‐associated architectural noncoding RNAs2017

    • Author(s)
      Chujo T, Yamazaki T, Kawaguchi T, Kurosaka S, Takumi T, Nakagawa S, Hirose T
    • Journal Title

      The EMBO Journal

      Volume: - Issue: 10 Pages: 861-868

    • DOI

      10.15252/embj.201695848

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] RNase Sensitivity Screening for Nuclear Bodies with RNA Scaffolds in Mammalian Cells2017

    • Author(s)
      Mannen, T. and Hirose, T.
    • Journal Title

      Bio-protocol

      Volume: 7 Issue: 8

    • DOI

      10.21769/bioprotoc.2232

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A possible link between specific transfer RNA methylation and tumorigenic phenotype of breast cancer.2017

    • Author(s)
      Tomita K
    • Journal Title

      RNA & DISEASE,

      Volume: -

    • DOI

      10.14800/rd.1530

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Human BCDIN3D Monomethylates Cytoplasmic Histidine Transfer RNA.2017

    • Author(s)
      Martinez A, Yamashita S, Nagaike T, Sakaguchi Y, Suzuki T, Tomita K
    • Journal Title

      Nucleic Acids Res

      Volume: - Pages: 5423-5436

    • DOI

      10.1093/nar/gkx051

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystal structures of U6 snRNA-specific terminal uridylyltransferase2017

    • Author(s)
      Yamshita S, Takagi Y, Nagaike T, Tomita K.
    • Journal Title

      Nature Communications

      Volume: -

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Synthetic mRNA devices that detect endogenous proteins and distinguish mammalian cells2017

    • Author(s)
      Kawasaki S, Fujita Y, Nagaike T, Tomita K, Saito H.
    • Journal Title

      Nucleic Acids Res.

      Volume: -

    • NAID

      120006305984

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity.2016

    • Author(s)
      Adriaens C, Standaert L, Barra J, Latil M, Verfaillie A, Kalev P, Boeckx B, Wijnhoven PWG, Radaelli E, Vermi W, Leucci E, Lapouge G, Beck B, ven den Oord J, Nakagawa S, Hirose T, Sablina AA, Lambrechts D, Aerts S, Blanpain C, Marine JC.
    • Journal Title

      Nat. Med.

      Volume: 22 Issue: 8 Pages: 861-868

    • DOI

      10.1038/nm.4135

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL2016

    • Author(s)
      Mannen T, Yamashita S, Tomita K, Goshima G, Hirose T
    • Journal Title

      J Cell Biol.

      Volume: 214 Issue: 1 Pages: 45-59

    • DOI

      10.1083/jcb.201601024

    • NAID

      120005828468

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Control of the heat stress-induced alternative splicing of a subset of genes by hnRNP K.2016

    • Author(s)
      Yamamoto K, Furukawa M, Fukumura K, Kawamura A, Yamada T, Suzuki H, Hirose T, Sakamoto H, Inoue K.
    • Journal Title

      Genes Cells.

      Volume: 21 Issue: 9 Pages: 1006-1014

    • DOI

      10.1111/gtc.12400

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of membrane KCNQ1/KCNE1 channel density by sphingomyelin synthase 1.2016

    • Author(s)
      Wu M, Takemoto M, Taniguchi M, Takumi T, Okazaki T, Song WJ
    • Journal Title

      Am J Physiol Cell Physiol

      Volume: 311 Issue: 7 Pages: 817-830

    • DOI

      10.1083/jcb.201601071

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Paraspeckles modulate the intranuclear distribution of paraspeckle-associated Ctn RNA.2016

    • Author(s)
      Anantharaman A, Jadaliha M, Tripathi V, Nakagawa S, Hirose T, Jantsch MF, Prasanth SG, Prasanth KV.
    • Journal Title

      Sci Rep

      Volume: 6 Issue: 1 Pages: 34043-34043

    • DOI

      10.1038/srep34043

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Simultaneous multicolor detection of RNA and proteins using super-resolution microscopy.2016

    • Author(s)
      Mito M, Kawaguchi T, Hirose T, Nakagawa S.
    • Journal Title

      Methods

      Volume: 98 Pages: 158-165

    • DOI

      10.1016/j.ymeth.2015.11.007

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Architectural RNAs (arcRNAs): A class of long noncoding RNAs that functions as the scaffold of nuclear bodies2016

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuro Hirose
    • Journal Title

      Biochim Biophys Acta

      Volume: 1859 Issue: 1 Pages: 139-146

    • DOI

      10.1016/j.bbagrm.2015.05.007

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mechanism of 3′-matured tRNA discrimination from 3′-immature tRNA by class-II CCA-adding enzyme.2016

    • Author(s)
      Yamashita S, Tomita K
    • Journal Title

      Structure

      Volume: 24

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies.2015

    • Author(s)
      Kawaguchi T, Tanigawa A, Naganuma T, Ohkawa Y, Souquere S, Pierron G, Hirose T.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 112 Issue: 14 Pages: 4304-4309

    • DOI

      10.1073/pnas.1423819112

    • NAID

      120005661435

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles.2015

    • Author(s)
      Hennig S, Kong G, Mannen T, Sadowska A, Kobelke S, Blythe A, Knott G, Iyer S, Ho D, Newcombe EA, Hosoki K, Goshima N, Hatters D, Trinkle-Mulcahy L, Hirose T*, Bond CS*, Fox AH* (*co-corresponding)
    • Journal Title

      J. Cell Biol.

      Volume: 210 Issue: 4 Pages: 3529-539

    • DOI

      10.1083/jcb.201504117

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Genome-wide co-localization screening of nuclear body components using a fluorescently tagged FLJ cDNA clone library.2015

    • Author(s)
      Hirose, T., Goshima, N.
    • Journal Title

      Methods Mol. Biol.

      Volume: 1262 Pages: 155-163

    • DOI

      10.1007/978-1-4939-2253-6_9

    • ISBN
      9781493922529, 9781493922536
    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chromatin remodeling complexes in the assembly of long noncoding RNA-dependent nuclear bodies.2015

    • Author(s)
      Kawaguchi T, Hirose T.
    • Journal Title

      Nucleus

      Volume: 6 Issue: 6 Pages: 462-467

    • DOI

      10.1080/19491034.2015.1119353

    • NAID

      120005905615

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Clues to long noncoding RNA taxonomy.2015

    • Author(s)
      Hirose T, Nakagawa S.
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1859 Issue: 1 Pages: 1-2

    • DOI

      10.1016/j.bbagrm.2015.11.011

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Measurement of acceptor-TΨC helix length of tRNA for terminal A76-addition by A-adding enzyme2015

    • Author(s)
      Yamashita S, Martinez A, Tomita K
    • Journal Title

      Structure

      Volume: 23 Issue: 5 Pages: 830-842

    • DOI

      10.1016/j.str.2015.03.013

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Rapid and Efficient Elimination of Specific Nuclear Noncoding RNAs in Mammalian Cells with Antisense Oligonucleotides.2015

    • Author(s)
      Hirose, T., Mannen, T.
    • Journal Title

      Methods Mol. Biol.

      Volume: 1206 Pages: 149-156

    • DOI

      10.1007/978-1-4939-1369-5_13

    • ISBN
      9781493913688, 9781493913695
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The lncRNA Neat1 is required for corpus luteum formation and the establishment of pregnancy in a subpopulation of mice.2014

    • Author(s)
      Nakagawa S, Shimada M, Yanaka K, Mito M, Arai T, Takahashi E, Fujita Y, Fujimori T, Standaert L, Marine JC, Hirose T.
    • Journal Title

      Development

      Volume: 141 Issue: 23 Pages: 4618-27

    • DOI

      10.1242/dev.110544

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The long noncoding RNA Neat1 is required for mammary gland development and lactation.2014

    • Author(s)
      Standaert, L., Adriaens, C., Radaelli, E., Van Keymeulen, A., Blanpain, C., Hirose, T., Nakagawa, S. & Marine, J.C.
    • Journal Title

      RNA

      Volume: 20 Issue: 12 Pages: 1844-1849

    • DOI

      10.1261/rna.047332.114

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Estrogen receptor alpha regulated lncRNA NEAT1 is a critical modulator of prostate cancer.2014

    • Author(s)
      Chakravarty, D., Sboner, A., Nair, S., Giannopoulou, E., Li, R., Hennig, S., Mosquera, J.M., Pauwels, J., Park, K., Kossai, M., MacDonald, T., Fontugne, J., Erho, N., Vergara, I., Ghadessi, M., Davicioni, E., Jenkins, R., Palanisamy, N., Chen, Z., Nakagawa, S., Hirose, T., et al.
    • Journal Title

      Nat. Commun.

      Volume: 5 Issue: 1 Pages: 5383-5383

    • DOI

      10.1038/ncomms6383

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular insights into replication initiation by Qβ replicase using ribosomal protein S12014

    • Author(s)
      Takeshita D, Yamashita S Tomita K
    • Journal Title

      Nucleic Acids Res.

      Volume: 42 Issue: 16 Pages: 10823-10831

    • DOI

      10.1093/nar/gku745

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structures and Functions of Qβ Replicase: Translation factors beyond protein synthesis.2014

    • Author(s)
      Tomita K
    • Journal Title

      Int. J. Mol. Sci.

      Volume: 15 Issue: 9 Pages: 15552-15570

    • DOI

      10.3390/ijms150915552

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Presentation] Nuclear Architecture by Long Noncoding RNAs2018

    • Author(s)
      Tetsuro Hirose
    • Organizer
      北大-中国医薬大ジョイントシンポジウム
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular Mechanism of Nuclear Body Formation by Architectural Noncoding RNAs2018

    • Author(s)
      廣瀬哲郎
    • Organizer
      SILエキスパートシンポジウム “RNA-Binding Proteins in Neuroscience”
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Ancient and Modern RNA Worlds2018

    • Author(s)
      Tetsuro Hirose
    • Organizer
      The 2nd GI-CoRE GSQ, GSB, & IGM Joint Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ノンコーディングRNAによる核内構造体構築2018

    • Author(s)
      廣瀬哲郎
    • Organizer
      第12回日本エピジェネティックス研究会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Formation and function of phase separated nuclear bodies with architectural noncoding RNAs2018

    • Author(s)
      Tetsuro Hirose
    • Organizer
      Japan-Australia Joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] HSATIII lncRNA-based nuclear stress bodies control pre-mRNA splicing in post-stress recovery phase2018

    • Author(s)
      Kensuke Ninomiya, Shungo Adachi, Tohru Natsume, Junichi Iwakiri, Goro Terai, Kiyoshi Asai, and Tetsuro Hirose
    • Organizer
      Japan-Australia Joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Multiple NEAT1 modular RNA domains cooperatively construct phase-separated, distinct, highly ordered paraspeckle nuclear bodies2018

    • Author(s)
      Tomohiro Yamazaki, Souquere Sylvie, Hiro Takakuwa, Hyura Yoshino, Takeshi Chujo, Archa H fox, Charles S Bond, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose
    • Organizer
      Japan-Australia Joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular mechanisms of the paraspeckle formation as distinct nuclear bodies2018

    • Author(s)
      Hiro Takakuwa, Tomohiro Yamazaki, Sylvie Souquere, Gerard Pierron, and Tetsuro Hirose
    • Organizer
      Japan-Australia Joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Stress-Induced Transient Recruitment of m6A RNAs to HSATIII lncRNA Based Nuclear Stress Bodies2018

    • Author(s)
      Mahmoud Khamis Aly, Kensuke Ninomiya, Shungo Adachi, Tohru Natsume and Tetsuro Hirose
    • Organizer
      Japan-Australia Joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The functional analysis of liver-specific long noncoding RNA Hep-ncR1 in hepatocarcinoma cells2018

    • Author(s)
      Midori Dannoura, Tomohiro Yamazaki, Kimihiro Hino, and Tetsuro Hirose
    • Organizer
      Japan-Australia Joint RNA meeting 2018
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Nuclear architecture by long noncoding RNAs through phase separation2018

    • Author(s)
      Tetsuro Hirose
    • Organizer
      2018 China Nucleic Acid Forum
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 核内ストレス体によるストレス回復期のスプライシング制御2018

    • Author(s)
      二宮賢介、足達俊吾、夏目徹、岩切淳一、寺井悟朗、浅井潔、廣瀬哲郎
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] NEAT1 lncRNA 機能ドメイン上での NONO オリゴマー化が相 分離した核内構造体パラスペックル形成を誘導する2018

    • Author(s)
      山崎智弘、Sylvie Souquere、吉野彪羅、高桑 央、 中條岳志、Archa H. Fox、Charles S. Bond、中川真一、 Gerard Pierron、廣瀬哲郎
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 核内構造体パラスペックル独立性維持のための分子機構の解明2018

    • Author(s)
      高桑央,山崎智弘,Sylvie Souquere, Gerard Pierron, 廣瀬哲郎
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ノンコーディングRNAによる核内構造体の形成機構2018

    • Author(s)
      廣瀬哲郎
    • Organizer
      第59回日本神経学会学術大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Formation and Function of Phase Separated Nuclear Bodies with Architectural Noncoding RNAs2018

    • Author(s)
      Tetsuro Hirose
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 核内構造体パラスペックルはNEAT1 lncRNAの複数のモジュールドメインの協調した機能により構築される2018

    • Author(s)
      山崎智弘, Sylvie Souquere, 吉野彪羅, 高桑央, 中條岳志, Archa H. Fox, Charles S. Bond, 中川真一, Gerard Pierron, 廣瀬哲郎
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 核内構造体パラスペックル独立性維持のための分子機構の解明2018

    • Author(s)
      高桑央, 山崎 智弘, Sylvie Souquere, Gerard Pierron, 廣瀬哲郎
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 腸管出血性大腸菌におけるAtaT-AtaRトキシン-アンチトキシン複合体の立体構造の決定2018

    • Author(s)
      八代悠歌、富田 耕造
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] ヒトTUT4によるLin28依存的なlet7 miRNA抑制の分子構造基盤2018

    • Author(s)
      山下征輔、富田 耕造
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Crystal structure of enterohemorrhagic Escherichia coli AtaT-AtaR toxin-antitoxin complex2018

    • Author(s)
      Yuka Yashiro, Kozo Tomita
    • Organizer
      27th tRNA Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Dissection of elements and machinery of architectural noncoding RNAs2018

    • Author(s)
      Tetsuro Hirose
    • Organizer
      Keystone symposium Noncoding RNAs: Form, Function, Physiology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 核内構造体アーキテクチュラルRNAの探索手法の開発:難溶性RNA-seqとFABS法2018

    • Author(s)
      中條岳志、田中くみ子、山崎智弘、萬年太郎、川口哲哉、黒坂哲、内匠透、中川真一、廣瀬哲郎
    • Organizer
      第3回北海道大学・部局横断シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Sat III lncRNAを足場とする核内ストレス体の構成変化とストレス回復期における役割2018

    • Author(s)
      二宮賢介 足達俊吾 夏目徹 廣瀬哲郎
    • Organizer
      第3回北大部局間横断シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体パラスペックルはNEAT1 lncRNAの複数の機能RNAドメインが協働することにより構築される2018

    • Author(s)
      山崎 智弘、 Sylvie Souquere、 吉野 彪羅、 高桑 央、 中條 岳志、 Archa H. Fox、 中川 真一、 Gerard Pierron、 廣瀬 哲郎
    • Organizer
      第3回北大部局横断シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] Dissection of NEAT1 lncRNA domains to establish distinct, highly ordered, phase-separated paraspeckle nuclear body2018

    • Author(s)
      山崎 智弘, Sylvie Souquere, 吉野 彪羅, 高桑 央, 木立 尚孝, Archa H. Fox, Charles S. Bond, 中川 真一, Gerard Pierron、廣瀬 哲郎
    • Organizer
      Keystone symposium Noncoding RNAs: Form, Function, Physiology
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] NEAT1 lncRNAに潜むパラスペックル構築を司るRNAエレメント2017

    • Author(s)
      山崎智弘Sylvie Souquere、木立尚孝、Archa H. Fox, 中川真一, Gerard Pierron, 廣瀬哲郎
    • Organizer
      第2回北大・部局横断シンポジウム「免疫・癌・感染」
    • Place of Presentation
      北海道大学工学部鈴木章記念ホール ポスター発表
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Novel functional insights into Sat III lncRNA-dependent nuclear stress bodies in post-stress recovery phase.2017

    • Author(s)
      二宮 賢介、Mahmoud Khamis Aly、廣瀬 哲郎
    • Organizer
      第2回北大・部局横断シンポジウム「免疫・癌・感染」
    • Place of Presentation
      北海道大学工学部鈴木章記念ホール ポスター発表
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Unusual semi-extractability as the hallmark of nuclear body-;associated architectural long noncoding RNAs2017

    • Author(s)
      中條岳志,山崎智弘,川口哲哉,黒坂哲,内匠透,中川真一,廣瀬哲郎
    • Organizer
      第2回北大・部局横断シンポジウム「免疫・癌・感染」
    • Place of Presentation
      北海道大学工学部鈴木章記念ホール ポスター発表
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Distinct RNA polymerase transcripts competitively function as scaffold of the DBC1 nuclear bodies in specific cancer cell lines.2017

    • Author(s)
      Taro Mannen, Seisuke Yamashita, Kozo Tomita, Naoki Goshima, Tetsuro Hirose.
    • Organizer
      第2回北大・部局横断シンポジウム「免疫・癌・感染」
    • Place of Presentation
      北海道大学工学部鈴木章記念ホール ポスター発表
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Unravelling The Architectural Organization of The SAT III lncRNA- Dependent Nuclear Stress Bodies2017

    • Author(s)
      Mahmoud Khamis Aly, Kensuke Ninomiya, Shungo Adachi, Tohru Natsume and Tetsuro Hirose
    • Organizer
      第2回北大・部局横断シンポジウム「免疫・癌・感染」
    • Place of Presentation
      北海道大学工学部鈴木章記念ホール
    • Year and Date
      2017-03-14
    • Related Report
      2016 Annual Research Report
  • [Presentation] Architectural lncRNAの機能解明2017

    • Author(s)
      廣瀬哲郎
    • Organizer
      第三回バイオシグナル研究会
    • Place of Presentation
      神戸大学(兵庫県神戸市)
    • Year and Date
      2017-03-08
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Liquid-liquid phase separation induced by NEAT1 lncRNA that builds paraspeckle nuclear body.2017

    • Author(s)
      Tomohiro Yamazaki、Sylvie Souquere, Archa H. Fox, Shinichi Nakagawa, Gerard Pierron, Tetsuro Hirose.
    • Organizer
      Phase Separation and RNA Processing as Drivers of Cancer and Neurodegenerative Disease.
    • Place of Presentation
      San Diego, CA, USA
    • Year and Date
      2017-02-24
    • Related Report
      2016 Annual Research Report
  • [Presentation] Dissection of architectural noncoding RNA elements and machinery2017

    • Author(s)
      Tetsuro Hirose
    • Organizer
      Simon Fraser Univ MBB seminar
    • Place of Presentation
      Vancouver, Canada
    • Year and Date
      2017-02-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Liquid-liquid phase separation and paraspeckle formation induced by the specific region of NEAT1 lncRNA2017

    • Author(s)
      Tetsuro Hirose
    • Organizer
      Keystone Symposia
    • Place of Presentation
      Banff, Canada
    • Year and Date
      2017-02-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Remarkable semi-extractability as the hallmark of nuclear body-associated architectural long ncRNAs2017

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuya Kawaguchi, Satoshi Kurosaka,Toru Takumi, Shinichi Nakagawa, and Tetsuro Hirose.
    • Organizer
      Keystone Symposia Protein-RNA Interactions: Scale, Mechanisms, Structure and Function of Coding and Noncoding RNPs
    • Place of Presentation
      Banff (Canada)
    • Year and Date
      2017-02-07
    • Related Report
      2016 Annual Research Report
  • [Presentation] Distinct RNA polymerase transcripts competitively function as scaffold of the DBC1 nuclear bodies in specific cancer cell lines.2017

    • Author(s)
      Taro Mannen, Seisuke Yamashita, Kozo Tomita, Naoki Goshima, Tetsuro Hirose.
    • Organizer
      第11回研究所ネットワーク国際シンポジウム
    • Place of Presentation
      徳島大学藤井節郎記念ホール(徳島県蔵本町)
    • Year and Date
      2017-01-26
    • Related Report
      2016 Annual Research Report
  • [Presentation] ノンコーディング RNAによる細胞内構造構築機構2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      第69回日本細胞生物学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Molecular Dissection of Architectural Noncoding RNA Elements and Machinery2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      第43回内藤コンファレンス
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nuclear Architecture by Long Noncoding RNAs2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      日韓(HU-KSMCB)ジョイントシンポジウム
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Noncoding RNA-dependent Nuclear Body Formation through Liquid-liquid Phase Separation2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      第40回日本神経科学会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Molecular Dissection of Architectural Noncoding RNA Elements and Machinery,2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      Symposium on Multidisciplinary insights into higher order biological complexes
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Architectural Function of Noncoding RNA for Subcellular Structures2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      第40回日本分子生物学会(ConBio2017)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Nuclear Architecture by Long Noncoding RNAs2017

    • Author(s)
      廣瀬 哲郎
    • Organizer
      11th International Symposium on Nanomedicine (ISNM2017)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Crystal Structure of U6 snRNA-specific terminal uridylyltransferase2017

    • Author(s)
      Seisuke Yamashita & Kozo Tomita
    • Organizer
      The 43rd Naito Conference on "Noncoding RNA:Biology, Chemistry, & Diseases"
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] A possible link between specific transfer RNA methylation and tumorigenic phenotype of breast cancer2017

    • Author(s)
      Kozo Tomita
    • Organizer
      The 43rd Naito Conference on "Noncoding RNA:Biology, Chemistry, & Diseases"
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] tRNAのメチル化と乳がん転移の相関2017

    • Author(s)
      Kozo Tomita
    • Organizer
      第76回 日本癌学会学術総会 シンポジウム 「がん研究につながるRNA生物学の新展開」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] ADPリボシル化によるRNAポリウリジル化の制御機構2017

    • Author(s)
      永池崇、富田 耕造
    • Organizer
      生命科学系学会合同年次大会(ConBio2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] The specific domains of architectural NEAT1 lncRNA induces the formation of the distinct phase-separated paraspeckle nuclear body2017

    • Author(s)
      Tomohiro Yamazaki, Taro Mannen, Sylvie Souquere, Hisanori Kiryu, Archa H. Fox, Shinichi Nakagawa, Gerard Pierron and Tetsuro Hirose
    • Organizer
      RNA Society Meeting 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Unusual semi-extractability as a hallmark of nuclear body-associated architectural long noncoding RNAs2017

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuya Kawaguchi, Satoshi Kurosaka, Shinichi Nakagawa, and Tetsuro Hirose
    • Organizer
      RNA Society Meeting 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Unusual semi-extractability as a hallmark of nuclear body-associated architectural long noncoding RNAs2017

    • Author(s)
      Takeshi Chujo and Tetsuro Hirose
    • Organizer
      2nd International Symposium for Noncoding RNA Neo-Taxonomy in conjunction with Tokyo RNA Club 23rd Meeting
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The specific region of architectural NEAT1 lncRNA induces the formation of the phase-separated paraspeckle nuclear body2017

    • Author(s)
      Tomohiro Yamazaki, Taro Mannena, Sylvie Souquereb, Hisanori Kiryu, Archa H. Foxc,d, Shinichi Nakagawae, Gerard Pierronb and Tetsuro Hirose
    • Organizer
      第43回内藤コンファレンス 非コードRNA:生物学、化学、そして疾患
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Novel functional insights into Sat III lncRNA-dependent nuclear stress bodies in post-stress recovery phase.2017

    • Author(s)
      Kensuke Ninomiya, Mahmoud Khamis Aly and Tetsuro Hirose
    • Organizer
      第43回内藤コンファレンス 非コードRNA:生物学、化学、そして疾患
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] The specific regions of architectural NEAT1 lncRNA induce the formation of the phase-separated paraspeckle nuclear body2017

    • Author(s)
      山崎智弘、萬年太郎、Sylvie Souquere、木立尚孝、Archa H. Fox、中川真一、Gerard Pierron、廣瀬哲郎
    • Organizer
      第54回日本生化学会北海道支部例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体形成のアーキテクチュラル長鎖ncRNAの共通特性としての難抽出性2017

    • Author(s)
      中條岳志、山崎智弘、黒坂哲、内匠透、中川真一、廣瀬哲郎
    • Organizer
      第54回日本生化学会北海道支部例会
    • Related Report
      2017 Annual Research Report
  • [Presentation] NEAT1長鎖ノンコーディングRNAは液相分離を誘導することで核内構造体パラスペックルを構築する2017

    • Author(s)
      山崎 智弘、Sylvie Souquere 、木立 尚孝、Archa H. Fox 、中川 真一、Gerard Pierron 、廣瀬 哲郎
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内ストレス体の構成変化とストレス回復期におけるスプライシング制御2017

    • Author(s)
      二宮賢介 足達俊吾 夏目徹 廣瀬哲郎
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Unusual semi-extractability as a hallmark of nuclear body-associated architectural long noncoding RNAs2017

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuya Kawaguchi, Satoshi Kurosaka, Shinichi Nakagawa, and Tetsuro Hirose
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体パラスペックル内のNEAT1lncRNAの空間的配置を規定する分子メカニズムの解明2017

    • Author(s)
      吉野彪羅、山崎智弘、廣瀬哲郎
    • Organizer
      第19回日本RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Sat III lncRNAを足場とする核内ストレス体の構成変化とストレス回復期における役割2017

    • Author(s)
      二宮賢介 足達俊吾 夏目徹 廣瀬哲郎
    • Organizer
      RNAフロンティアミーティング2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Molecular mechanisms to determine spatial organization of NEAT1 lncRNA within the paraspeckles2017

    • Author(s)
      Hyura Yoshino, Tomohiro Yamazaki, Tetsuro Hirose
    • Organizer
      RNAフロンティアミーティング2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体パラスペックルが独立した構造体として存在するための分子メカニズムの解明2017

    • Author(s)
      高桑 央、山崎 智弘、Sylvie Souquere、 Gerard Pierron、 廣瀬 哲郎
    • Organizer
      RNAフロンティアミーティング2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] 核内構造体パラスペックルはNEAT1 lncRNAの複数の機能ドメインにより構築される2017

    • Author(s)
      山崎智弘、Sylvie Souquere、木立 尚孝、Archa H. Fox、中川 真一、Gerard Pierron、廣瀬 哲郎
    • Organizer
      第40回日本分子生物学会(ConBio2017)
    • Related Report
      2017 Annual Research Report
  • [Presentation] Characterization of architectural lncRNA elements using genome-editing technology.2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-12-01
    • Related Report
      2016 Annual Research Report
  • [Presentation] RNA elements in NEAT1 lncRNA for the architectural role of the paraspeckle.2016

    • Author(s)
      山崎 智弘、Sylvie Souquere、木立尚孝、馬場由貴、麦倉一樹、Archa H. Fox、Charles S. Bond、中川 真一、Gerard Pierron、廣瀬 哲郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] SatIII lncRNAと核内ストレス体のストレス回復期における新規機能2016

    • Author(s)
      二宮 賢介、Mahmoud Khamis Aly、廣瀬 哲郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Sam68核内構造体は、HNRNPLアダプターを介して2つのRNase感受性サブ構造体が融合してつくられる2016

    • Author(s)
      萬年太郎, 山下征輔, 富田耕造, 五島直樹, 廣瀬哲郎
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Remarkable semi-extractability as a hallmark of architectural long noncoding RNAs associated with nuclear bodies.2016

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuya Kawaguchi, Satoshi Kurosaka, Toru Takumi, Shinichi Nakagawa, Tetsuro Hirose
    • Organizer
      第39回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Annual Research Report
  • [Presentation] Dissection of architectural noncoding RNA elements and machinery.2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      Cold Spring Harbor Aisa meeting
    • Place of Presentation
      World Hotel Grand Dushulake Suzhou(中国 蘇州)
    • Year and Date
      2016-11-17
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Elements and machinery of architectural long noncoding RNAs.2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      Shanghai Institutes for Biological Sciences Seminar series
    • Place of Presentation
      Shanghai Institute for Biological Science(中国 上海)
    • Year and Date
      2016-11-14
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ノンコーディングRNAによる核内アーキテクチャ制御2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      富山大学薬学部大学院講義「遺伝情報制御学特論」
    • Place of Presentation
      富山大学(富山県富山市)
    • Year and Date
      2016-11-08
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] プリオン様RNA結合タンパク質の機能制御を担うnon-coding RNA作動エレメントの解析2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      「筋萎縮性側索硬化症(ALS)新規治療法開発をめざした病態解明」 平成28年度ワークショップ
    • Place of Presentation
      都市センターホテル(東京都千代田区)
    • Year and Date
      2016-09-30
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Architectural noncoding RNAs controlling subnuclear organization and gene expression.2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      Mini-symposium on ncRNA
    • Place of Presentation
      Academia Sinica (台湾台北市)
    • Year and Date
      2016-09-29
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Functional characterization of architectural RNA species toward noncoding RNA taxonomy.2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      RNA2016 Symposium
    • Place of Presentation
      国立成功大学(台湾台南市)
    • Year and Date
      2016-09-27
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 核内構造体の機能構築に必要なlncRNA機能ドメインの解析2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      第89回日本生化学会大会シンポジウム
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2016-09-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Methylation of 5′-phosphate of cytoplasmic tRNAHis in human2016

    • Author(s)
      Kozo Tomita
    • Organizer
      26th tRNA Conference
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Recognition of tRNAHis by tRNAHis specific methyltransferase, ThMTase2016

    • Author(s)
      Anna Martinez & Kozo Tomita
    • Organizer
      26th tRNA Conference
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
  • [Presentation] Mechanism of 3′-matured tRNA discrimination from 3′-immature tRNA by class-II CCA-adding enzyme2016

    • Author(s)
      Seisuke Yamashita & Kozo Tomita
    • Organizer
      26th tRNA Conference
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2016-09-04
    • Related Report
      2016 Annual Research Report
  • [Presentation] Remarkable semi-extractability as a hallmark of architectural long noncoding RNAs associated with nuclear bodies2016

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Tetsuya Kawaguchi, Satoshi Kurosaka, Toru Takumi, Shinichi Nakagawa, Tetsuro Hirose
    • Organizer
      RNAフロンティアミーティング2016
    • Place of Presentation
      いこいの湯宿いろは(北海道ニセコ町)
    • Year and Date
      2016-08-31
    • Related Report
      2016 Annual Research Report
  • [Presentation] 非コードRNAの配列と機能の連関2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      日本進化学会第18回大会
    • Place of Presentation
      東京工業大学(東京都目黒区)
    • Year and Date
      2016-08-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Noncoding RNA2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      RNA2016
    • Place of Presentation
      京都国際会館(京都府京都市)
    • Year and Date
      2016-06-29
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Decoding “architectural” RNA elements in NEAT1 lncRNA,2016

    • Author(s)
      Tomohiro Yamazaki, Sylvie Souquere, Archa H. Fox, Gerard Pierron, Shinichi Nakagawa, Tetsuro Hirose
    • Organizer
      RNA 2016 (The 21st Annual Meeting of the RNA Society)
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] The Sam68 nuclear body is composed of two RNase-sensitive substructures with the adaptor HNRNPL2016

    • Author(s)
      Taro Mannen, Naoki Goshima, and Tetsuro Hirose
    • Organizer
      RNA2016(The 21st Annual Meeting of the RNA Society)
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] Regulation of Poly(U) Polymerase by Poly(ADP-ribose)2016

    • Author(s)
      Takashi Nagaike & Kozo Tomita
    • Organizer
      21st Annual meeting of the RNA Society
    • Place of Presentation
      国立京都国際会館(京都府京都市)
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
  • [Presentation] Semi-extractable feature as the hallmark of nuclear body-associated architectural long ncRNAs2016

    • Author(s)
      廣瀬哲郎
    • Organizer
      国際シンポジウム「Clues to Non-coding RNA Taxonomy」
    • Place of Presentation
      東京大学(東京都文京区)
    • Year and Date
      2016-06-27
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Re-quantification of paraspeckle architectural components and an exploratory search for novel nuclear RNA bodies by using an improved RNA extraction method.2016

    • Author(s)
      Takeshi Chujo, Tomohiro Yamazaki, Shinichi Nakagawa, Tetsuya Kawaguchi, Chikako Fujikawa, Ayaka Kubota, Toru Takumi, Tetsuro Hirose
    • Organizer
      Keystone symposia
    • Place of Presentation
      Santa Fe, USA
    • Year and Date
      2016-02-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR/Cas9-mediated dissection of NEAT1 lncRNA to identify “architectural” RNA elements.2016

    • Author(s)
      Tomohiro Yamazaki and Tetsuro Hirose
    • Organizer
      Keystone symposia
    • Place of Presentation
      Santa Fe, USA
    • Year and Date
      2016-02-21
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CRISPR/Cas9システムを用いたNEAT1 lncRNAに潜む構造構築エレメントの探索2015

    • Author(s)
      山崎智弘、廣瀬哲郎
    • Organizer
      RNAフロンティアミーティング2015
    • Place of Presentation
      タカミヤビレッジホテル樹林(山形県山形市)
    • Year and Date
      2015-12-08
    • Related Report
      2015 Annual Research Report
  • [Presentation] NEAT1 lncRNAの難溶性を考慮したパラスペックル構造因子の再定量と構造構築原理の探究2015

    • Author(s)
      中條 岳志、中川 真一、川口哲哉、内匠 透、廣瀬 哲郎
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] RNase感受性スクリーニングにより同定された核内RNA顆粒の形成機構の解析2015

    • Author(s)
      萬年 太郎、五島 直樹、廣瀬 哲郎
    • Organizer
      日本分子生物学会
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] CRISPR/Cas9-mediated dissection of NEAT1 lncRNA to identify “architectural” RNA elements2015

    • Author(s)
      Tomohiro Yamazaki and Tetsuro Hirose
    • Organizer
      日本分子生物学会ワークショップ
    • Place of Presentation
      神戸ポートアイランド(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Decoding noncoding RNA code: 細胞内構造構築機能を中心に2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      国際医療センター転写研究会セミナー
    • Place of Presentation
      国立国際医療センター(東京都新宿区)
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Long noncoding RNA による核内構造の動態制御2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      臨床ストレス応答学会大会
    • Place of Presentation
      東京農工大学(東京都小金井市)
    • Year and Date
      2015-11-07
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Molecular mechanism of template-independent CCA-addition2015

    • Author(s)
      富田耕造
    • Organizer
      Joint Australa and Japan RNA meeting 2014
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2015-11-03
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Regulation of Poly (U) Polymerase by ADP-ribosylation2015

    • Author(s)
      長永池崇、富田 耕造
    • Organizer
      Joint Australa and Japan RNA meeting 2014
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2015-11-03
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Exploration of the functional code for architectural noncoding RNAs2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      国際シンポジウム「RNA regulation and Neuroscience」
    • Place of Presentation
      東北大学(宮城県仙台市)
    • Year and Date
      2015-10-29
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Molecular Basis of A-addition by Aquifex aeolicus A-adding enzyme2015

    • Author(s)
      Seisuke Yamashita, Kozo Tomita
    • Organizer
      10th International Symposium on Aminoacyl-tRNA Synthetases 2015AARS
    • Place of Presentation
      Barcelona, Spain
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular basis for CC-addition by Aquifex aeolicus CC-adding enzyme2015

    • Author(s)
      山下征輔、富田 耕造
    • Organizer
      25th tRNA Conference
    • Place of Presentation
      Kyllini Pelopponese, Greece
    • Year and Date
      2015-09-21
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] U6 snRNA特異的TUTase (TUT1)によるU6 snRNA認識機構2015

    • Author(s)
      高木悠友子、山下征輔、富田 耕造
    • Organizer
      日本RNA学会年会
    • Place of Presentation
      ホテルライフォート札幌(北海道札幌市)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Aquifex aeolicus A付加酵素によるA付加反応の分子基盤2015

    • Author(s)
      山下征輔、富田 耕造
    • Organizer
      日本RNA学会年会
    • Place of Presentation
      ホテルライフォート札幌(北海道札幌市)
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] ノンコーディングRNAによる核内アーキテクチュア2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      Aging, Bone and Cnacer Frontline Forum
    • Place of Presentation
      庭のホテル(東京都千代田区)
    • Year and Date
      2015-05-25
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] RNA機能と神経変性2015

    • Author(s)
      廣瀬哲郎
    • Organizer
      日本神経学会北海道地区生涯教育講演会
    • Place of Presentation
      北海道大学医学部(北海道札幌市)
    • Year and Date
      2015-03-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Search for RNA-dependent subnuclear structures in mammalian cells2014

    • Author(s)
      廣瀬哲郎
    • Organizer
      Tokyo RNA Club
    • Place of Presentation
      東京大学武田ホール(東京都文京区)
    • Year and Date
      2014-11-28
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The possible common mechanism underlying assembly of the nuclear bodies on architectural long noncoding RNAs2014

    • Author(s)
      廣瀬哲郎
    • Organizer
      Joint Australa and Japan RNA meeting 2014
    • Place of Presentation
      Sydney, Australia
    • Year and Date
      2014-11-03
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The common mechanism underlying assembly of the nuclear granules on the architectural noncoding RNAs2014

    • Author(s)
      廣瀬哲郎
    • Organizer
      ESF/EMBO Conference
    • Place of Presentation
      Polonia Castle, Poland
    • Year and Date
      2014-09-13
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞内構造構築を担うlncRNAの作用機序と関連疾患2014

    • Author(s)
      廣瀬哲郎
    • Organizer
      第157回日本獣医学会学術集会(シンポジウム)
    • Place of Presentation
      北海道大学高等教育推進機構(北海道札幌市)
    • Year and Date
      2014-09-09
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Architectural noncoding RNAによる細胞内構造構築の分子機構とその意義2014

    • Author(s)
      廣瀬哲郎
    • Organizer
      第51回日本生化学会北海道支部例会
    • Place of Presentation
      北海道大学百年記念会館(北海道札幌市)
    • Year and Date
      2014-07-18
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] 核内ボディの骨格として働く構造構築RNA(arcRNA) ノンコーディングRNA~RNA分子の全体像を俯瞰する~2016

    • Author(s)
      中條岳志、廣瀬哲郎
    • Total Pages
      372
    • Publisher
      化学同人
    • Related Report
      2016 Annual Research Report
  • [Book] Long Noncoding RNAs: Structures and Functions2015

    • Author(s)
      Mannen, T., Chujo, T., Hirose, T.
    • Total Pages
      22
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Remarks] ノンコーディング RNA の新暗号を解読 ~ゲノム機能に必要な新しい配列ルールの理解に貢献~

    • URL

      https://www.hokudai.ac.jp/news/180622_pr2.pdf

    • Related Report
      2018 Annual Research Report
  • [Remarks] プレスリリース:「抽出しにくいRNA」から核内顆粒形成に関わる癌関連ノンコーディングRNAを発見

    • URL

      https://www.hokudai.ac.jp/news/170413_pr.pdf

    • Related Report
      2017 Annual Research Report
  • [Remarks] 研究成果:「抽出しにくいRNA」から核内顆粒形成に関わる癌関連ノンコーディングRNAを発見

    • URL

      http://www.igm.hokudai.ac.jp/achievements/20170413EMBO.php

    • Related Report
      2017 Annual Research Report
  • [Remarks] 特定の癌細胞でRNA顆粒が融合して核内構造体を形成するメカニズムを発見

    • URL

      http://www.hokudai.ac.jp/news/160705.igm_pr.pdf

    • Related Report
      2016 Annual Research Report

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Published: 2014-11-20   Modified: 2022-03-29  

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