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Studies on in vitro translation system of mitochondria

Research Project

Project/Area Number 03044061
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionUniversity of Tokyo

Principal Investigator

WATANABE Kimitsuna  University of Tokyo, Professor, 工学部, 教授 (00134502)

Co-Investigator(Kenkyū-buntansha) YOKOKAWA Takashi  Tokyo Institute of Technology, 生命理工学部, 助手 (90242304)
KAWAI Gota  University of Tokyo, 工学部, 助手 (70211860)
UEDA Takuya  University of Tokyo, 工学部, 助手 (80184927)
NISHIKAWA Kazuya  Tokyo Institute of Technology, 生命理工学部, 助教授 (60109262)
SPREMULLI Li  ノスカロライナ大学, 理学部, 教授
SPREMULLI Linda lucy  University of North Carolina
LINDA Lucy S  ノースカロライナ大学, 理学部, 教授
SPREMULL Lin  ノースカロライナ大学, 理学部, 教授
Project Period (FY) 1991 – 1993
Project Status Completed (Fiscal Year 1993)
Budget Amount *help
¥9,000,000 (Direct Cost: ¥9,000,000)
Fiscal Year 1993: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1992: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1991: ¥3,000,000 (Direct Cost: ¥3,000,000)
KeywordsMitochondria / Ribosome / Translation factors / In vitro translationsystem / Poly(U)-dependentpoly(^<Phe>)synthesis / Formyltransferase / EF-Tu / IF-2 / In vitro翻訳系 / TRNA / 遺伝暗号変化 / 伸〓因子 / 開始因子 / NMR / In vitro翻訳学 / リボソ-ム / tRNA / 伸長因子
Research Abstract

The purpose of this project is to investigate the molecular mechanism of the animal mitochondrial (mt) translation system, especially, to elucidate the relationship between genetic code variations [UGA, termination to Trp codons ; AUA, Ile to Met codons ; AGA/AGG, Arg to Ser(invertebrates), Gly(Ascidian) and Termination codons(vertebrates)] found in animal mitochondria and tRNAs complementary to the varied codons, possessing unusual primary and tertiary structures [lack of D loop-T loop interaction ; lack of D arm or T arm]. By joining the knowledge and techniques of our group and Spremulli's group, this project was made possible. [1992] 1) A large-scale preparation of mt tRNAs was made possible by a hybridization method using DNA probes complementary to tRNA sequences. 2)It was elucidated that tRNA^<Ser> complementary to UCN codons possesses an unusual secondary structure. 3)Biologically active ribosomes, initiation factor (IF-2), elongation factors (EF-Tu, EF-G) and aminoacyl-tRNA sy … More nthetasaes were isolated and their properties investigated.
[1993] 1) The recognition sites of tRNA^<Ser> complementary to AGY codons by seryl-tRNA synthetase was investigated. It was elucidated that A44 in the T loop is the most important recognition site. 2) The poly(U)-dependent poly(Phe) synthesis system was constructed for bovine liver mitochondria and the exchangeability of its components with those of E.coli was investigated. 3) A novel modified nucleoside, 5-formylcytidine was found at the first anticodon of bovine mt tRNA^<Met>.4) The higher-order structure of mt tRNA^<Phe> was investigated by the sensitivity with RNase and chemical reagents.
[1994] 1) The poly(U)-dependent poly(Phe) synthesis was activated by addition of 1 mM spermine. 2) To verify that AUA is a Met codon, ribosomal binding and translation of Met-tRNA^<Met> in the presence of AUA-containing mRNA were attempted. 3) By obtaining fMet-tRNA^<Met> with the purified formyltransferase, it was elucidated that fMet-tRNA prefers IF-2 rather than EF-Tu and vice versa for Met-tRNA, indicating that the tRNA^<Met> is bifunctional by formylation of Met-tRNA. Less

Report

(3 results)
  • 1993 Final Research Report Summary
  • 1992 Annual Research Report
  • 1991 Annual Research Report
  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] Kawori Wakita et al.: "Higher-order structure of bovine mitochondrial tRNA^<Phe> lacking the ‘conserved' GG and TΨCG sequences as inferred by enzymatic and chemical probing" Nucleic Acids Research. 22. 347-353 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Shigeo Yoshinari et al.: "Existence of nuclear-encoded 5S-rRNA in bovine mitochondria" FEBS Letters. 338. 137-142 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Yoh-ichi Watanabe et al.: "Tertiary structures of mitochondrial tRNAs having characteristic secondary structrues" Nucleic Acids Symposium Series. 29. 209-210 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Shin-ichi Yokobori et al.: "Codons AGA and AGG are read glycine in ascidian mitochondria" Journal of Molecular Evolution. 36. 1-8 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Yoshinori Kumazawa et al.: "Effect of the higher-order structure of tRNAs on the stability of hybrids with oligodeoxyribonucleotides:separation of tRNA by an efficient solution hybridization" Nucleic Acids Research. 20. 2223-2232 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Takuya Ueda et al.: "The T-loop region of animal mitochondrial tRNA^<Ser>(AGY) is a main recognition site for homologous seryl-tRNA synthetase" Nucleic Acids Research. 20. 2217-2222 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Syozo Osawa et al.: "Recent evidence for evolution of the genetic code" Microbiological reviews. 56. 229-264 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Takashi Yokogawa et al.: "A novel cloverleaf structure found in mammalian mitochondrial tRNA^<Ser> (UCN)" Nucleic Acids Research. 19. 6101-6105 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Takashi Yokogawa et al.: "Structure of mitochondrial tRNA" Nucleic Acids Symposium Series. 25. 175-176 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Kiyohisa Mizumoto et al.: "Interactions of bovine mitochondrial phenylalanyl-tRNA with ribosomes and elongation factors from mitochondria and bacteria" Biochimica et Biophysica Acta. 1090. 167-172 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Shuichi Asakawa et al.: "Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes" Journal of Evolution. 32. 511-520 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Kawori Wakita et al.: "Higher-order structure of bovine mitochondrial tRNA^<Phe> lacking the 'conserved' GG and T*CG sequences as inferred by enzymatic and chemical probing" Nucleic Acids Research. 22. 347-353 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Shigeo Yoshinari et al.: "Existence of nuclear-encoded 5S-rRNA in bovine mitochondria" FEBS Letters. 338. 137-142 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Yoh-ichi Watanabe et al.: "Tertiary structures of mitochondrial tRNAs having characteristic secondary structures" Nucleic Acids Symposium Series. 29. 209-210 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Shin-ichi Yokobori et al.: "Codons AGA and AGG are read glycine in ascidian mitochondria" Journal of Molecular Evolution. 36. 1-8 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Yoshinori Kumazawa et al.: "Effect of the higher-order structure of tRNAs on the stability of hybrids with oligodeoxyribonucleotides : separation of tRNA by an efficient solution hybridization" Nucleic Acids Research. 20. 2223-2232 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Takuya Ueda et al.: "The T-loop. region of animal mitochondrial tRNA^<Ser>(AGY) is a main recognition site for homologous seryl-tRNA synthetase" Nucleic Acids Research. 20. 2217-2222 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Syozo Osawa et al.: "Recent evidence for evolution of the genetic code" Microbiological reviews. 56. 229-264 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Takashi Yokogawa et al.: "A novel cloverleaf structure found in mammalian mitochondrial tRNA^<Ser> (UCN)" Nucleic Acids Research. 19. 6101-6105 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Takashi Yokogawa et al.: "Structure of mitochondrial tRNA" Nucleic Acids Symposium Series. 25. 175-176 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Kiyohisa Mizumoto et al.: "Interactions of bovine mitochondrial phenylalanyl-tRNA with ribosomes and elongation factors from mitochondria and bacteria" Biochimica et Biophysica Acta. 1090. 167-172 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Shuichi Asakawa et al.: "Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes" Journal of Evolution. 32. 511-520 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] S.YOKOBORI,T.UEDA and K.WATANABE: "Codons AGA and AGG are read as glycine in Ascidian mitochondria" Journal of Molecular Evolution. 36. 1-8 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] T.YOKOGAWA,T.UEDA,K.NISHIKAWA,K.WATANABE et al.: "Serine tRNA complementary to the nonuniversal serine codon CUG in Candida cylindracea:Evolutionay implications" Proceedings of National Academy of Sciences,U.S.A.89. 7408-7411 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Y.KUMAZAWA,T.YOKOGAWA,H.TURUI,K.MIURA and K.WATANABE: "Effect of the higher-order structure of tRNAs on the stability of hibrids with oligodeoxyribonucleotides:separation of tRNA an efficient solution hybridization" Nucleic Acids Research. 20. 2223-2232 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] T.UEDA,Y.YOTSUMOTO,K.IKEDA,and K,WATANABE: "The T-loop region of animal mitochondrial tRNAser(AGY)is a main recognition site for homologous seryl-tRNA synthetase" Nucleic Acids Research. 20. 2217-2222 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] L.Ma and L.L.Spremulli: "Immnuological characterization of the compex forms of chloroplast translational initiation factor 2 from Euglena gracilis" The Journal of Biological Chemistry. 267. 18356-18360 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] G.KAWAI et al.: "Conformational rigidity of N^4-acety1-2'-0-methylcytidine found in tRNA of extremely thermophilic archaebacteria(Archaea)" Nucleosides & Nucleotides. 11. 759-771 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] 三浦.渡辺他著: "分子生物学からバイオテクノロジーへ" 芝立出版(株), 206 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] Syozo Ozawa: "Recent Evidence for Evolation of the Genetic Codl" Microbiologial Reciecos. 56. 229-264 (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Takashi Yokgawa: "Anovel cloverleaf structure found in mammolian mitochoondrial tRNA^<eer>(VCN)" Nucleic Acido Research. 19. 6101-6105 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] H,-X.LiaD: "Inifiation of Protein Synthesis in Animal Midochondria" Journal of Biological Chemistry. 266. 20714-20719 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] C,J.Schwartzbach: "Interaction of Animal Mitocohondrial EF-Tu-EF-Ts with Aminoaeyl-tRNA,Guanine Micleotides and Rihosomes" Journal of Biological Chemistry. 266. 16324-16330 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Yoshinori Kemazawa: "EHect of the higer-order Structure of tRNA on the Atohility of nyorids with aligodeoxyritonutleo rders:separation of tRNA by an efficient selution hybn'dizetion" Nucleic Acids Research.

    • Related Report
      1991 Annual Research Report
  • [Publications] Takuya Ueda: "The T-loop region of animal mito chsnceneal tRNA^<Ser>(AGY) is a main recognition sete for hsmologous seryl-tRNA Sgnltitiase" Nucleic Acids Research.

    • Related Report
      1991 Annual Research Report

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Published: 1991-04-01   Modified: 2016-04-21  

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