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Collaboration on DNA sequence-specific recognition by small molecules

Research Project

Project/Area Number 10044134
Research Category

Grant-in-Aid for Scientific Research (B).

Allocation TypeSingle-year Grants
Section一般
Research Field Bioorganic chemistry
Research InstitutionTokyo Medical and Dental University

Principal Investigator

SUGIYAMA Hiroshi  Tokyo Medical and Dental University, Institute for Medical and Dental Engineering, Professor, 生体材料工学研究所, 教授 (50183843)

Co-Investigator(Kenkyū-buntansha) ITO Shigeru  Tokyo Medical and Dental University, 生体材料工学研究所, 助手 (70143609)
SUGIMOTO Akiko  Tokyo Medical and Dental University, 生体材料工学研究所, 助手 (60143608)
大崎 愛弓  東京医科歯科大学, 医用器材研究所, 教務職員 (50161360)
ロビンソン ハワード  イリノイ大学, 細胞構造生物学科, 助手
ワン アンドリュー  イリノイ大学, 細胞構造生物学科, 教授
Project Period (FY) 1998 – 2000
Project Status Completed (Fiscal Year 2000)
Budget Amount *help
¥10,500,000 (Direct Cost: ¥10,500,000)
Fiscal Year 2000: ¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 1999: ¥3,400,000 (Direct Cost: ¥3,400,000)
Fiscal Year 1998: ¥4,000,000 (Direct Cost: ¥4,000,000)
KeywordsAntitumor Agent / Sequence-specific recognition of DNA / DNA alkylation / Post genome / Pyrrole-imidazole polyamides / 抗がん剤 / グルーブバインダー / 分子認識 / DNA分子認識 / DNA構造 / NMR / X線構造解析 / ブレオマイシン / 平行DNA
Research Abstract

By the completion of the human genome project, many diseases including cancer, hereditary and viral diseases can be understood by the DNA sequence level. Control of the specific gene expression will provide ultimate gene therapy. Minor groove binding polyamides containing N-methylpyrrole and N-methylimidazole amino acids exhibit promising performance based on the recognition of nucleic acid sequences. Various types of sequence-specific DNA binding agents are developed and used for the regulation of gene expression. In this collaboration, we synthesized novel type of polyamide-alkylator conjugates and unnatural DNA and investigated molecular basis of sequence specific recognition by small molecules including pyrrole-imidazole polyamides. These synthetic compounds alkylated predetermined DNA sequences selectively, and also some of them possessed selective potency for certain cancer cell lines. One of the future directions of rational design of molecular medicine in the post genome era is proposed.

Report

(4 results)
  • 2000 Annual Research Report   Final Research Report Summary
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] Yang,X.-L.,Ikeda,S.,Saito,I.,Wang,A.H.-J.Sugiyama,H.,: "Structural Studies of a Stable Paralles-Stranded DNA Duplex Incorporating Isoguanine : Cytosine and Isocytosine : Guanine Basepairs by Nuclear Magnetic Resonance Spectroscopy."Biophysical Journal. 75. 1163-1171 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tao,Z.-F.,Fujiwara,T.,Saito,I.,Sugiyama,H.: "Rational Design of Sequence-Specific DNA Alkylating Agents Based on Duocarmycin A and Pyrrole-Imidazole Hairpin Polyamides.,."J.Am.Chem.Soc.. 121. 4961-4967 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujiwara,T.,Tao,Z.-F.,Ozeki,Y.,Saito,I.,Wang,A.H.-J.,Lee,M.,Sugiyama,H.: "Modulation of Sequence Specificity of Duocarmycin-Dependent DNA Alkylation by Pyrrole-Imidazole Triamides."J.Am.Chem.Soc.. 121. 7706-7707 (1999)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Oyoshi,T.,Sugiyama,H.: "Mechanism of DNA Strand Scission Induced by (1,10-Phenanthroline) Copper Complex : Direct DNA Cleavage Occurs Primarily due to 5' and 4'H Abstraction."J.Am.Chem.Soc.. 122. 6313-6314 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tao,Z.-F.,Saito,I.,Sugiyama,H.: "Highly cooperative DNA dialkylation by the homodimer of imidazole-pyrrole diamide-CPI conjugate with vinyl linker"J.Am.Chem.Soc.. 122. 1602-1608. (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Bando,T.,Iida,H.,Saito,I.,Sugiyama,H.: "Sequence-specific DNA Interstrand cross-linking by imidazole-pyrrole CPI conjugate"J.Am.Chem.Soc. (in press). (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] 飯田博一,杉山弘: "ピロール-イミダゾールポリアミドによるDNA塩基配列認識の進歩:ポスト・ゲノム時代の創薬"有機合成化学協会誌 第58巻10号. 13 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Kino, K. ; Sugiyama, H.: "Possible Cause of GC->CG Transversion Mutation by Guanine Oxidation Product, Imidazolone"Chem.& Biol.. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Bando, T. ; Iida, H. ; Saito, I. ; Sugiyama, H.: "Sequence-specific DNA Interstrand cross-linking by imidazole-pyrrole CPI conjugate."J.Am.Chem.Soc.. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Oyoshi, T. ; Sugiyama, H.: "Mechanism of DNA Strand Scission Induced by (1,10-Phcnanthroline) Copper Complex : Direct DNA Cleavage Occurs Primarily due to 5' and 4'H Abstraction."J.Am.Chem.Soc.. 122. 6313-6314 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tao, Z.-F. ; Saito, I. ; Sugiyama, H.: "Highly Coorperative Dialkylation by the Homodimer of Imidazole-Pyrrole Diamide-CPI Conjugate."J.Am.Chem.Soc.. 122. 1602-1608 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tao, Z.-F. ; Fujiwara, T. ; Saito, I. ; Sugiyama, H.: "Rational Design of Sequence-Specific DNA Alkylating Agents Based on Duocarmycin A and Pyrrole-Imidazole Hairpin Polyamides."J.Am.Chem.Soc.. 121. 4961-4967 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Fujiwara, T. ; Tao, Z.-F. ; Ozeki, Y. ; Saito, I. ; Wang, A.H.-J. ; Lee, M. ; Sugiyama, H.: "Modulation of Sequence Specificity of Duocarmycin-Dependent DNA Alkylation by Pyrrole-Imidazole Triamides"J.Am.Chem.Soc.. 121. 7706-7707 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Yang, X.-L. ; Sugiyama, H. ; Ikeda, S. ; Saito, I. ; Wang, A.H.-J.: "Structural Studies of a Stable Paralles-Stranded DNA Duplex Incorporating Isoguanine : Cytosine and Isocytosine : Guanine Basepairs by Nuclear Magnetic Resonance Spectroscopy"Biophysical Journal. 75. 1163-1171 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2000 Final Research Report Summary
  • [Publications] Tao,Z.-F.;Saito,I.;Sugiyama,H.: "Highly cooperative DNA dialkylation by the homodimer of imidazole-pyrrole diamide-CPI conjugate with vinyl linker"J.Am.Chem.Soc.. 122. 1602-1608 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kawanishi,S.;Oikawa,S.;Kawanishi,M.;Sugiyama,H.;Saito,I.;Stredowski,L.;Wilson,W.D.: "Amplification of Pepleomycin-Mediated DNA Cleavage and Apoptosis by Unfused Aromatic Cations."Biochemistry. 39. 13210-13215 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Ikeda,S.;Saito,I.;Sugiyama,H.: "Metallo-bleomycin cleaves parallel-stranded DNA similarly to B-DNA"Tetrahedron Letters. 41. 3919-3922 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Oyoshi,T.;Sugiyama,H.: "Mechanism of DNA Strand Scission Induced by (1,10-Phenanthroline) Copper Complex : Direct DNA Cleavage Occurs Primarily due to 5' and 4'H Abstraction."J.Am.Chem.Soc.. 122. 6313-6314 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Zhang,Q.-M.;Miyabe,I.;Matsumoto,Y.;Kino,K.;Sugiyama,H.;Yonei,S: "Identification of Repair Enzymes for 5-Formyluracil in DNA : Nth, Nei and MutM Proteins of Escherichia coli."J.Biol.Chem. 275. 35471-35477 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Bando,T.;Iida,H.;Saito,I.;Sugiyama,H.: "Sequence-specific DNA Interstrand cross-linking by imidazole-pyrrole CPI conjugate"J.Am.Chem.Soc. (in press). (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] 飯田博一,杉山弘: "ピロールーイミダゾールポリアミドによるDNA塩機配列認識の進歩:ポスト・ゲノム時代の創薬"有機合成化学協会誌 第58巻10号. 13 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Zhang, Q-M.; Sugiyama, H.; Miyabe, I.; Matuda, S.; Kino, K.; Saito, I.; Yonei, S.: "Replication in vitro and Cleavage by Restriction Endonuclease of 5-Formyluracil-and 5-Hydroxymethyluracil-Containing Oligonucleotides."Int. J. Radiat. Biol.. 75. 59-65 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tao, Z.-F.; Fujiwara, T.; Saito, I.; Sugiyama, H.: "Rational Design of Sequence-Specific DNA Alkylating Agents Based on Duocarmycin A and Pyrrole-Imidazole Hairpin Polyamides."J. Am. Chem. Soc.. 121. 4961-4967 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kawai, K.; Saito, I.; Kawashima, E.; Ishido, Y.; Sugiyama, H.: "Intrastrand 2'β Hydrogen Abstraction of 5'-Adjacent Deoxyguanosine by Deoxyuridin-5-yl in Z-form DNA."Tetrahedron Letters. 40. 2589-2592 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Kawai, K.; Saito, I.; Sugiyama, H.: "Photochemical Halogen-Exchange Reaction of 5-lodouracil-Containing Oligonucleotides."Tetrahedron Letters. 40. 5721-5724 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Fujiwara, T.; Tao, Z-F.; Ozeki, Y.; Saito, I.; Wang, A.H.-J.; Lee, M.; Sugiyama,H.: "Modulation of Sequence Specificity of Duocarmycin-Dependent DNA Alkylation by Pyrrole-Imidazole Triamides."J. Am. Chem. Soc.. 121. 7706-7707 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Yang, X.-L.; Hubbard IV, R. B.; Lee, M.; Tao, Z.-F.; Sugiyama, H.; Wang, H.-J.: "Imidazole-imidazole pair as a minor groove recognition motif for T:G mismatched base pairs."Nucleic Acids Res.. 27. 4183-4190 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Sugiyama,H: "Stabilization of Hoogsteen Base Paining By Introduction of NH2 Group at the C8 Position of Adenine." Tetrahedron Letters. 39. 5221-5224 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiyama,H: "Facile Synthesis of Puromycin-Tethered Oligonucletides at the 3'End.1" Tetrahedron Letters. 39. 5975-5978 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiyama,H: "Product Analysis of GG-Specific Photooxidation of DNA via Electron Transfer:2-Aminoimidazolone as a Major Guanine Oxidation Product." J.Am.Chem.Soc.120. 7373-7374 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiyama,H: "Conformation Dependent Photochemistry of 5-Halouracil-Containing DNA:Stereospecific 2'α-Hydroxylation of Deoxyribose in Z-form DNA" J.Am.Chem.Soc.121. 1391-1392 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiyama,H: "Highly Efficient DNA Interstrand Crosslinking Induced by an Antitumor Antibiotic,Carzinophilin" Tetrahedron Letters. 40. 315-318 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Sugiyama,H: "Structural Studies of a Stable Paralles-Stranded DNA Duplex Inocorporating Isoguanine:Cyt〓 and Isocytosine:Guanine Basepairs by Nuclear Magnetic Resonance Spectroscopy" Biophysical Journal. 75. 1163-1171 (1998)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2016-04-21  

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