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Protein-protein interaction in intracellular signal transduction

Research Project

Project/Area Number 10179103
Research Category

Grant-in-Aid for Scientific Research on Priority Areas (A)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionHOKKAIDO UNIVERSITY (1999-2001)
Tokyo Metropolitan Organization for Medical Research (1998)

Principal Investigator

INAGAKI Fuyuhiko  Hokkaido Univ., Grad. School of Pharmaceutical Sciences, Prof., 大学院・薬学研究科, 教授 (70011757)

Co-Investigator(Kenkyū-buntansha) KYOUGOKU Yoshimasa  National Institute of Advanced Industrial Science and Technology, Bioinformation Center, Derector, センター長 (90012632)
AKUSU Hideo  Osaka Univ. Protein Research Institute, Prof., 蛋白質研究所・蛋白質物性部門, 教授 (60029965)
SHIRAKAWA Masahiro  Yokohama City Univ. Grad. School of Sciences, Prof., 大学院・総合理学研究科, 教授 (00202119)
AIMOTO Saburo  Osaka Univ. Institute of Protein Research, Prof, 蛋白質研究所, 教授 (80029967)
NISHIMURA Yoshifumu  Yokohama City Univ. Grad. School of Sciences, Prof, 大学院・総合理学研究科, 教授 (70107390)
森川 耿右  生物分子工学研究所, 構造解析部門, 部門長
Project Period (FY) 1998 – 2001
Project Status Completed (Fiscal Year 2001)
Budget Amount *help
¥330,200,000 (Direct Cost: ¥330,200,000)
Fiscal Year 2001: ¥29,600,000 (Direct Cost: ¥29,600,000)
Fiscal Year 2000: ¥69,100,000 (Direct Cost: ¥69,100,000)
Fiscal Year 1999: ¥78,000,000 (Direct Cost: ¥78,000,000)
Fiscal Year 1998: ¥153,500,000 (Direct Cost: ¥153,500,000)
Keywordssignal transduction / protein-protein interaction / intracellular signal transduction / nuclear signal transduction / novel NMR techniques / 班会議 / シンポジウム / ワークショップ / 備品整備 / 班研究会 / フィロポディア / 二成分系 / リン酸基転移反応 / 嫌気センサー
Research Abstract

The aim of the present research project is to elucidate the intracellular signal transduction based on the three dimensional structure of proteins and protein complexes. For this purpose, we organized three groups ; The first group was concerned with the intracellular signal transduction including regulational mechanism of actin cytoskeleton and growth factor receptor signaling. The second group was to investigate the signal transduction in the nucleus, where signals were integrated by co-activators. The third group focused on the development of new techniques to elucidate the protein-protein interaction and to establish the method for high-throughout structural determination by NMR. Owing to the nature of interdisciplinary research, molecular biologists, cell biologists and structural biologists joined each group. The supervising group was also organized to set up the research directions and to promote collaborations among each group. In the present research project, a number of joint researches were made in four years from 1998 till 2001 and more than 80 novel structures of proteins and ligand-protein complexes were determined and published in distinguished international journals. We invited many young scientists as members of the project. We also organized NMR workshops where we invited Dr. James Keeler of Cambridge University who has reputation for teaching basic NMR concepts and advanced NMR techniques. The research project contributed significantly not only to promote the exchange of knowledge of interdisciplinary areas but also to develop structural biology in Japan.

Report

(5 results)
  • 2001 Annual Research Report   Final Research Report Summary
  • 2000 Annual Research Report
  • 1999 Annual Research Report
  • 1998 Annual Research Report
  • Research Products

    (40 results)

All Other

All Publications (40 results)

  • [Publications] Ponting, C.P.: "OPR, PC and AID : all in the PB1 family"TIBS. 27. 10 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ogura, K.: "Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain"J.Biomol.NMR. 22. 37-46 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawasaki, M.: "Random PCR-Based screening for soluble domains using green fluorescent protein"Biochem.Biophys.Res.Commun.. 280. 842-844 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Terasawa, H.: "Structure and ligand recognition of the PB1 domain : A novel protein Modulebinding to the PC motif"The EMBO J.. 20. 3947-3956 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishida M.: "Novel recognition mode between Vav and Grb2 SH3 domains"The EMBO J.. 20. 2995-3007 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yuzawa, S: "Solution structure of Grb2 reveals extensive flexibility for target recognition"J.Mol.Biol.. 306. 527-537 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ponting, C. P. et al.: "OPR, PC and AID : all in the PB! Family"TIBS. 27. 10 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ogura, K. et al.: "Solution structure of N-terminal SH3 domain of Vav."J. Biomol. NMR. 22. 37-46 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Kawasaki, M. et al.: "Random PCR-based screening for soluble domains using green fluorescent protein"B. B. R. C.. 280. 842-844 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Terasawa, H. et al.: "Structure and ligand recognition of the PB1 domain"EMBO J.. 20. 3947-3956 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Nishida, M. et al.: "Novel recognition mode between Vav and Grb2"EMBO J.. 20. 2995-3007 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Yuzawa, S. et al.: "Solution structure of Grb2 reveals extensive flexibility for target recognition"J. Mol. Biol.. 306. 527-537 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2001 Final Research Report Summary
  • [Publications] Ponting, C.P.: "OPR, PC and AID : all in the PB1 family"TIBS. 27. 10 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ogura, K.: "Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain"J. Biomol. NMR. 22. 37-46 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Kawasaki, M.: "Random PCR-Based screening for soluble domains using green fluorescent protein"Biochem. Biophys. Res. Commun.. 280. 842-844 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Terasawa, H.: "Structure and ligand recognition of the PB1 domain : A novel protein Modulebinding to the PC motif"The EMBO J.. 20. 3947-3956 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nishida, M.: "Novel recognition mode between Vav and Grb2 SH3 domains"The EMBO J.. 20. 2995-3007 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yuzawa, S: "Solution structure of Grb2 reveals extensive flexibility for target recognition"J. Mol. Biol.. 306. 527-537 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yuzawa,S: "Solution structure of Grb2 reveals extensive flexibility for target recognition."J.Mol.Biol.. 306. 527-537 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Inooka,H.: "Conformation of a peptide ligand bound to its G-protein coupled recetor, Nature Structural Biology."Nature Structural Biology. 8. 161-165 (2001)

    • Related Report
      2000 Annual Research Report
  • [Publications] Okuda,M.: "Structure of the Central Core Domain of TFIIEβ with a Novel Double-stranded DNA-binding Surface"EMBO J.. 19. 1346-1356 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kunishima,N.: "Structural basis of glutamate recognition by a dynamic metabotropic glutamate receptor."Nature. 407. 971-977 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Goda,S: "Amyloid protofilament formation of hen egg lysozyme in highly concentrated ethanol solution."Protein Science. 9. 369-375 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Kawakami,T: "Polypeptide synthesis using an expressed peptide as a building block via the thioester method."Tetrahedron Lett.. 41. 2625-2628 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 児嶋長次郎,甲斐荘正恒: "生物物理"NMRによる生体分子中の水素結合の直接的検出. 6 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] Yagi H: "Functional conformation changes in the TF(1)-ATPase beta subunit probed by 12 tyrosine residues"Biophys J.. 77・4. 2175-2183 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Tsutakawa SE.: "Recognition of a TG mismatch : the crystal structure of very short patch repair endonuclease in complex with a DNA duplex"Cell. 99・6. 615-623 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ohki I.: "Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD1"EMBO J.. 18・23. 6653-6661 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ogura K.: "Solution structure of human acidic fibroblast growth factor and interaction with heparin-derived hexasaccharide"J.Biomol.NMR. 13. 11-24 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ogura K.: "Solution structure of the SH2 Domain of Grb2 Complexed with the Shc-derived Phosphotyrosine-containing Peptide"J.Mol.Biol.. 289. 439-445 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Koga H.: "Tetratricopeptide repeat (TPR) motifs of p67 (phox) participate in interaction with the small GTPase Rac and activation of the phagocyte NADPH oxidase"J.Biol.Chem.. 274・35. 25051-25060 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 西村 善文: "蛋白質核酸酵素"転写因子とコアクチベータの構造生物学. 18 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] 藤原 敏道: "蛋白質核酸酵素"固体核磁気共鳴法. 8 (1999)

    • Related Report
      1999 Annual Research Report
  • [Publications] Ichikawa,S.: "Solution Structure of Derf 2,the major mite allergen for atopic diseases." J.Biol.Chem.273. 356-360 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Ogura,K.: "Solution structure of human acldic fibroblast growth factor and interaction with heparin-derived hexasaccharide." J.Biomol.NMR. 13. 11-24 (1999)

    • Related Report
      1998 Annual Research Report
  • [Publications] Vassylev G.D: "Crystal Structure and Mutational Analysis of the Escherichia coli Putrescine Receptor." J.Biol.Chem.273. 17604-17609 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Fujiwara,T.: "Multidimensional solid-state NMR for determining dihedral angle from the correlation of ^<12>C-^1H and ^<13>C-^<13>C dipolar interactions under magic-angle spinning conditions." J.Chem.Phys. 109. 2380-2393 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Nishikawa,T.: "Solution structure of the DNA-binding domain of human telomeric protein,hTRf1." Structure. 6. 1057-1065 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] Yamazaki,T.: "Segmental Isotope Labeling for Protein NMR Using Peptide Splicing." J.Am.Chem.Soc.120. 5591-5592 (1998)

    • Related Report
      1998 Annual Research Report
  • [Publications] 稲垣冬彦: "SH2、SH3の構造生物学.(蛋白質 核酸 酵素増刊号 「構造生物学のフロンティア」)" 共立出版(株), 13(630) (1999)

    • Related Report
      1998 Annual Research Report

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Published: 1998-04-01   Modified: 2018-03-28  

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