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Genetic analysis of HIV/SIV and HTLV/STLV in Africa -Elucidation of Their Origins and Evolution

Research Project

Project/Area Number 12376002
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Virology
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

IDO Eiji  Kyoto University, Inst. for Virus Res., Instructor, ウイルス研究所, 助手 (70183176)

Co-Investigator(Kenkyū-buntansha) ICHIMURA Hiroshi  Kanazawa University, School of Medicine, Professor, 医学部, 教授 (10264756)
HAYAMI Masanori  Kyoto University, Inst. for Virus Res., Professor, ウイルス研究所, 教授 (40072946)
IBUKI Kentaro  Kyoto University, Inst. for Virus Res., Instructor, ウイルス研究所, 助手 (00273524)
TAKEHISA Jun  Kanazawa University, School of Medicine, Associate Prof., 医学部, 助教授 (90322114)
BIKANDOU Blaise  京都大学, 遺伝子実験施設, 外国人研究員
Project Period (FY) 2000 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥30,300,000 (Direct Cost: ¥24,900,000、Indirect Cost: ¥5,400,000)
Fiscal Year 2003: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2002: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2001: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2000: ¥6,900,000 (Direct Cost: ¥6,900,000)
KeywordsHIV / HTLV / STLV / genetic analysis / central Africa / AIDS / AIDS / 霊長類レトロウイルス / 霊長類レトロウィルス
Research Abstract

The two primate retrovirus groups, HIV/SIV and HTLV/STLV, are now known to be genetically related each other and constitute a huge viral superfamily. Accumulated knowledges on the genetical analyses and the way of transmission of these two viral groups indicated that both groups appear to have been transmitting zoonotically. To elucidate the origins and evolution of these two virus groups, we conducted serosurveys and phylogenetic analyses of these viruses among AIDS patients, healthy persons, and Pygmy people, an ethnic minority in Central Africa (Cameroon, Republic of Congo, and Democratic Republic of Congo).
Seroprevalece of Pygmies was unexpectedly low, and the viruses, if any, were considered to have been transmitted from neighboring Bantu residents judged from genetic data of the isolated ones. Detailed genetic analyses of HIV-1 from AIDS patients have revealed that the viral genomes are not only highly diversified but also frequently mosaic, which means that the genomes are mostly recombinant forms. From the survey among various monkey species, we firstly isolated a new SIV from black mangabeys captured in Democratic Republic of Congo. The phylogenetic position of this virus (SIVblm) is very unique, and interestingly a part of its pol genomic region (RnaseH) is genetically very close to that of the Ant strain, one of the oldest HIV 1 strain, suggesting that the genome of present HIV 1 might be mosaic and its origin is partly from this monkey species.

Report

(5 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • 2000 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] Bikandou, B., Takehisa, J., et al.: "genetic subtypes of HIV type 1 in Republic of Congo."AIDS Res.Hum. Retroviruses. 16(7). 613-619 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takehisa, J., Harada, Y., et al.: "Natural infection of wild-born mandrills (Mandrillus sphinx) with two different types of simian immunodeficiency virus."AIDS Res.Hum. Retroviruses. 17(12). 1143-1154 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takemura, Y., Yamashita, M., et al.: "High prevalence of simian T-lymphotropic virus type L in wild Ethiopian baboons."J.Virol.. 76. 1642-1648 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Taniguchi, Y., Takehisa, J., et al.: "genetic subtypes of HIV type 1 based on the vpu/env sequences in the Republic of Congo Brazzaville."AIDS Res.Hum. Retroviruses. 18(1). 79-83 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ndembi, N., Yumo, H., et al.: "HIV type 1 infection in Pygmy hunter gatherers is from contact with bantu rather than from nonHuman primates"AIDS Res.Hum.Retroviruses. 19(5). 441-445 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ndembi, N., Takehisa, H., et al.: "Genetic diversity of HIV type 1 in rural eastern Cameroon."J.Acq.Immun.Def.Synd.. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Bikandou, B., Takehisa, J., Mboudjeka, I., Ido, E., Kuwata, T., Miyazaki, Y., Moriyama, H., Harada, Y., Taniguchi, Y., Ichimura, H., Ikeda, M., Ndolo, P.J., Nzoukoudi, M.Y., M'Vouenze, R., M'Pandi, M., Parra, H.J., M'Pele, P., Hayami, M.: "Genetic subtypes of HIV type 1 in republic of Congo"AIDS Res.Hum.Retroviruses. 16(7). 613-619 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takehisa, J., Harada, Y., Ndembi N., Mboudjeka, I., Taniguchi, Y., Ngansop, C :, Kuate, S., Zekeng, L., Ibuki, K., Shimada, T., Bikandou, B., Yamaguchi-Kabata, Y., Miura, T., Ikeda, M., Ichimura, H., Kaptue, L., Hayami, M: "Natural infection of wild-born mandrills (Mandrillus sphinx) with two different types of simian immunodeficiency virus"AIDS Res.Hum.Retroviruses. 17. 1143-1154 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takemura, T., Yamashita, M., Shimada, M., Ohkura, S., Shotake, T., Ikeda, M., Miura, T., Hayami, M.: "High prevalence of simian T-lymphotropic virus type L in wild Ethiopian Baboons"J.Virol.. 76. 1642-1648 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Taniguchi, Y., Takehisa, J., Bikandou, B., Mbudjeka, I., Nzouloudi, M., M'Vouenze, R., Obengui, M'pele, P., Harada, Y., Ido, E., Hayami, M., Ichimura, H., Parra, H.: "Genetic subtypes of HIV type 1 based on the vpu/env sequences in Republic of Congo-Brazzaville"AIDS Res.Hum.Retroviruses. 18. 79-83 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ndembi, N., Yumo, H., Takehisa, J., Takemura, T., Kobayashi, E., Ngansop, C., Songok,.E., Miura, T., Ido, E., Hayami, M., Kaptue, L., Ichimura, H.: "HIV type 1 infection in Pygmy hunter gatherers is from contact with Bantu rather than from nonhuman primates"AIDS Res.Hum.Retroviruses. 19. 441-445 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ndembi, N., Takehisa, J., Zekeng, L., Kobayashi, E., Ngansop, C., Songok, E.M., Takemura, T., Ido, E., Hayami, M., Kaptue, L., Ichimura, H.: "Genetic Diversity of HIV Type 1 in Rural Eastern Cameroon"J.Acq.Immun.Def.Synd.. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ndembi N, Habakkuk Y, Ido E, Hayami M, Ichimura H, et al.: "HIV type1 infection in pygmy hunter gatherers is from contact with Bantu rather than from nonhuman primates"AIDS Res. Hum. Retroviruses. 19(5). 435-439 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takemura T, Hayami M.: "Phylogenetic analysis of SIV derived from mandrill and drill"Front. Biosci.. 9. 513-520 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Taniguchi Y., Takehisa J., Bikandou B., et al.: "genetic subtypes of HIV type 1 based on the vpu/env sequences in the Republic of Congo"AIDS Res. Hum. Retroviruses. 18. 79-83 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ndembi N., Yumo H., Takehisa J., et al.: "HIV-1 infection in Pygmy hunter gatherers is from contact with Bantu rather than from nonhuman primates"AIDS Res. Hum. Retroviruses. (in press).

    • Related Report
      2002 Annual Research Report
  • [Publications] Takehisa, J., Harada, Y., Hayami, M., et al.: "Natural Infection of wild-born mandrills(Mandrillus sphinx)with two different types of simian immunodeficiency virus"AIDS Res.Hum.Retroviruses. 17. 1143-1154 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Taniguchi, Y., Takehisa, J., IDO, E., Hayami, M., et al.: "Genetic subtypes of HIV type 1 based on the vpu/env sequences in the Rebublic of Congo"AIDS Res.Hum.Retroviruses. 18. 79-83 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 原田陽介, 三浦智行, 速水正憲: "HIVとSIVの起源と進化"カレントテラピー. 19. 103-108 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Bikandou,B.,Takehisa,J.,Mboudjzka,I.,Ido,E., et al.: "genetic subtypes of HIV type 1 in Republic of Congo."AIDS Res.Hum.Retrovivuses. 16(7). 613-619 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 武久盾、速水正憲: "HIVの起源と進化-そのサル起源と多様性獲得の機序"遺伝. 54. 41-48 (2000)

    • Related Report
      2000 Annual Research Report
  • [Publications] 原田陽介,三浦智行,速水正憲: "HIVとSIVの起源と進化"カレントテラピー. 19(2). 103-108 (2000)

    • Related Report
      2000 Annual Research Report

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Published: 2000-04-01   Modified: 2016-04-21  

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